Wall clock time and date at job start Mon Mar 8 2021 07:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.47221 * 2 1 4 4 C 1.50701 * 109.46791 * 239.99863 * 2 1 3 5 5 C 1.38835 * 120.33935 * 300.02073 * 4 2 1 6 6 C 1.38340 * 118.50731 * 179.72773 * 5 4 2 7 7 C 1.39095 * 119.09894 * 0.47781 * 6 5 4 8 8 N 1.39007 * 119.70814 * 179.79059 * 7 6 5 9 9 C 1.46500 * 120.00016 * 359.73110 * 8 7 6 10 10 H 1.08999 * 112.84640 * 336.18886 * 9 8 7 11 11 C 1.53778 * 113.69512 * 107.45953 * 9 8 7 12 12 C 1.53784 * 87.08081 * 89.12825 * 11 9 8 13 13 H 1.09004 * 113.61451 * 270.88641 * 12 11 9 14 14 C 1.52992 * 113.61673 * 139.98135 * 12 11 9 15 15 N 1.46503 * 109.47166 * 87.50094 * 14 12 11 16 16 C 1.34431 * 126.82189 * 124.71307 * 15 14 12 17 17 N 1.30833 * 108.07596 * 179.89528 * 16 15 14 18 18 C 1.33241 * 109.82798 * 0.37754 * 17 16 15 19 19 N 1.30712 * 108.94903 * 359.76790 * 18 17 16 20 20 C 1.53778 * 113.61391 * 205.00087 * 9 8 7 21 21 N 1.32426 * 120.58785 * 359.51378 * 7 6 5 22 22 C 1.31947 * 121.62419 * 0.25515 * 21 7 6 23 23 H 0.96704 * 113.99979 * 60.00157 * 1 2 3 24 24 H 1.08993 * 109.47009 * 120.00630 * 2 1 3 25 25 H 1.48500 * 109.99921 * 298.67667 * 3 2 1 26 26 H 1.48496 * 109.99739 * 59.99826 * 3 2 1 27 27 H 1.08002 * 120.74684 * 359.96517 * 5 4 2 28 28 H 1.08005 * 120.45319 * 180.26682 * 6 5 4 29 29 H 0.97005 * 120.00054 * 179.72271 * 8 7 6 30 30 H 1.08993 * 113.61229 * 334.58149 * 11 9 8 31 31 H 1.09000 * 113.61263 * 203.67798 * 11 9 8 32 32 H 1.08996 * 109.47544 * 207.50317 * 14 12 11 33 33 H 1.09007 * 109.47088 * 327.50753 * 14 12 11 34 34 H 1.07994 * 125.96184 * 0.03984 * 16 15 14 35 35 H 1.08003 * 125.52698 * 179.72851 * 18 17 16 36 36 H 1.08998 * 113.61879 * 156.24852 * 20 9 8 37 37 H 1.08997 * 113.69304 * 25.34938 * 20 9 8 38 38 H 1.07995 * 119.57302 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.5998 -2.0394 -1.4573 6 6 2.0768 -2.6528 -2.6020 7 6 2.8761 -1.9244 -3.4768 8 7 3.3658 -2.5294 -4.6285 9 6 3.0443 -3.9300 -4.9135 10 1 2.7925 -4.4972 -4.0174 11 6 2.0369 -4.1117 -6.0610 12 6 3.2449 -4.1401 -7.0121 13 1 3.5382 -3.1550 -7.3751 14 6 3.1187 -5.1742 -8.1325 15 7 2.4153 -4.5776 -9.2708 16 6 2.8514 -4.5074 -10.5405 17 7 1.9341 -3.9041 -11.2520 18 6 0.9062 -3.5687 -10.4734 19 7 1.1541 -3.9600 -9.2511 20 6 4.0768 -4.6280 -5.8143 21 7 3.1702 -0.6580 -3.2250 22 6 2.7255 -0.0461 -2.1438 23 1 -0.3933 0.4417 -0.7651 24 1 1.7923 -0.5139 0.8899 25 1 1.5880 2.4585 -1.2243 26 1 1.5615 2.4678 1.2085 27 1 0.9803 -2.5811 -0.7579 28 1 1.8346 -3.6842 -2.8118 29 1 3.9203 -2.0242 -5.2435 30 1 1.3844 -3.2513 -6.2094 31 1 1.4922 -5.0549 -6.0186 32 1 4.1126 -5.4932 -8.4463 33 1 2.5580 -6.0359 -7.7701 34 1 3.7935 -4.8853 -10.9092 35 1 0.0132 -3.0560 -10.7993 36 1 4.0899 -5.7124 -5.7045 37 1 5.0717 -4.1855 -5.7645 38 1 2.9861 0.9876 -1.9711 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14687812_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:49 Heat of formation + Delta-G solvation = 140.568829 kcal Electronic energy + Delta-G solvation = -21811.002705 eV Core-core repulsion = 18465.432063 eV Total energy + Delta-G solvation = -3345.570642 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.00199 -41.59910 -40.48370 -38.01138 -35.97050 -34.42346 -33.35026 -32.13733 -31.26290 -29.13428 -26.96407 -26.39376 -25.13770 -24.29152 -22.90697 -22.80412 -22.32609 -20.49879 -18.99025 -18.53465 -18.28445 -17.47890 -16.91980 -16.65424 -16.44462 -16.23176 -16.00508 -15.75948 -15.46382 -15.22991 -14.93463 -14.73186 -14.38176 -14.12551 -14.01777 -13.72969 -13.35929 -13.25481 -12.96007 -12.51249 -12.34600 -11.99637 -11.93235 -11.48835 -11.13759 -10.93510 -10.77151 -10.73806 -10.61950 -10.52783 -10.37116 -8.74803 -4.95364 0.23066 0.41309 0.67261 1.29829 1.30741 1.60713 1.94485 1.98508 2.04954 2.81936 3.06749 3.21294 3.37889 3.38817 3.39232 3.53381 3.57938 3.76556 3.80134 3.90068 3.95877 3.98145 4.05155 4.13081 4.32115 4.37258 4.38649 4.48537 4.53169 4.58502 4.72717 4.79232 4.94731 4.97938 5.02089 5.28611 5.31220 5.48139 5.51145 5.80546 5.96902 6.41867 6.47334 7.13600 7.13904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.059 4.059 3 Si 0.678 3.322 4 C -0.233 4.233 5 C -0.006 4.006 6 C -0.238 4.238 7 C 0.410 3.590 8 N -0.705 5.705 9 C 0.128 3.872 10 H 0.101 0.899 11 C -0.140 4.140 12 C -0.121 4.121 13 H 0.095 0.905 14 C 0.137 3.863 15 N -0.379 5.379 16 C 0.252 3.748 17 N -0.547 5.547 18 C 0.196 3.804 19 N -0.312 5.312 20 C -0.137 4.137 21 N -0.540 5.540 22 C 0.157 3.843 23 H 0.375 0.625 24 H 0.117 0.883 25 H -0.258 1.258 26 H -0.256 1.256 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.406 0.594 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.218 0.782 35 H 0.216 0.784 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.296 -3.934 0.742 5.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.170 4.170 3 Si 0.579 3.421 4 C -0.238 4.238 5 C -0.031 4.031 6 C -0.262 4.262 7 C 0.175 3.825 8 N -0.336 5.336 9 C 0.021 3.979 10 H 0.119 0.881 11 C -0.179 4.179 12 C -0.140 4.140 13 H 0.114 0.886 14 C 0.015 3.985 15 N -0.170 5.170 16 C -0.045 4.045 17 N -0.274 5.274 18 C -0.107 4.107 19 N -0.140 5.140 20 C -0.176 4.176 21 N -0.256 5.256 22 C -0.001 4.001 23 H 0.223 0.777 24 H 0.135 0.865 25 H -0.183 1.183 26 H -0.180 1.180 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.242 0.758 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.234 0.766 35 H 0.232 0.768 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.208 -3.021 1.002 5.276 hybrid contribution -1.145 -0.556 -0.344 1.319 sum 3.063 -3.577 0.657 4.755 Atomic orbital electron populations 1.86591 1.17949 1.79921 1.49344 1.24755 0.83696 1.10540 0.97983 0.95189 0.91689 0.74729 0.80511 1.20942 1.05912 0.96569 1.00389 1.21198 0.93820 0.93218 0.94903 1.21493 1.05375 1.01888 0.97452 1.18350 0.89167 0.88447 0.86558 1.44129 1.55946 1.11093 1.22455 1.21840 0.96416 0.81712 0.97886 0.88140 1.23519 0.96389 1.03555 0.94484 1.22869 0.98550 0.99236 0.93363 0.88637 1.21919 0.96562 0.95766 0.84209 1.50594 1.13969 1.43533 1.08903 1.26130 1.00091 0.96691 0.81627 1.70565 1.02791 1.19567 1.34449 1.26070 0.98899 0.98947 0.86752 1.78081 0.96813 1.16966 1.22142 1.23364 0.98559 1.01669 0.93986 1.67141 1.27416 1.09010 1.22048 1.22220 0.91433 0.98660 0.87781 0.77699 0.86547 1.18321 1.18040 0.84605 0.84778 0.75817 0.90413 0.88843 0.87760 0.88942 0.76577 0.76761 0.87950 0.90040 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.69 12.78 -35.23 -0.45 -1.14 16 2 C -0.06 0.01 2.84 36.01 0.10 0.11 16 3 Si 0.68 -0.52 29.82 -169.99 -5.07 -5.59 16 4 C -0.23 -0.14 5.40 -104.46 -0.56 -0.70 16 5 C -0.01 0.00 9.76 -39.32 -0.38 -0.39 16 6 C -0.24 -0.11 9.28 -39.23 -0.36 -0.48 16 7 C 0.41 0.61 7.65 -155.01 -1.19 -0.57 16 8 N -0.70 0.45 5.44 -53.15 -0.29 0.16 16 9 C 0.13 -0.36 4.10 -67.12 -0.28 -0.64 16 10 H 0.10 -0.34 6.11 -51.93 -0.32 -0.65 16 11 C -0.14 0.30 7.43 -25.92 -0.19 0.11 16 12 C -0.12 0.40 3.73 -89.81 -0.34 0.07 16 13 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 14 C 0.14 -0.51 6.39 -4.04 -0.03 -0.54 16 15 N -0.38 0.08 3.69 -62.63 -0.23 -0.15 16 16 C 0.25 -0.06 12.63 -90.65 -1.14 -1.20 16 17 N -0.55 -1.55 11.19 -15.83 -0.18 -1.73 16 18 C 0.20 0.44 13.03 -91.81 -1.20 -0.76 16 19 N -0.31 -0.76 12.57 29.29 0.37 -0.39 16 20 C -0.14 0.64 7.39 -25.92 -0.19 0.45 16 21 N -0.54 -1.48 10.39 -12.44 -0.13 -1.61 16 22 C 0.16 0.20 9.84 -17.56 -0.17 0.02 16 23 H 0.38 -0.46 8.70 45.56 0.40 -0.07 16 24 H 0.12 -0.11 7.96 -51.93 -0.41 -0.53 16 25 H -0.26 -0.35 7.11 56.52 0.40 0.06 16 26 H -0.26 -0.63 7.11 56.52 0.40 -0.23 16 27 H 0.14 -0.08 8.06 -52.49 -0.42 -0.50 16 28 H 0.13 -0.18 6.04 -52.48 -0.32 -0.50 16 29 H 0.41 -0.30 8.83 -40.82 -0.36 -0.66 16 30 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.09 -0.25 7.90 -51.93 -0.41 -0.66 16 32 H 0.10 -0.67 8.09 -51.93 -0.42 -1.09 16 33 H 0.09 -0.39 7.84 -51.93 -0.41 -0.79 16 34 H 0.22 -1.01 8.06 -52.49 -0.42 -1.43 16 35 H 0.22 -0.14 8.06 -52.48 -0.42 -0.56 16 36 H 0.10 -0.62 8.10 -51.93 -0.42 -1.05 16 37 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 38 H 0.16 -0.10 4.88 -52.49 -0.26 -0.36 16 LS Contribution 322.61 15.07 4.86 4.86 Total: 0.00 -9.16 322.61 -11.71 -20.87 By element: Atomic # 1 Polarization: -6.10 SS G_CDS: -4.66 Total: -10.76 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -5.93 Total: -4.51 kcal Atomic # 7 Polarization: -3.26 SS G_CDS: -0.46 Total: -3.72 kcal Atomic # 8 Polarization: -0.69 SS G_CDS: -0.45 Total: -1.14 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: -5.07 Total: -5.59 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -9.16 -11.71 -20.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687812_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.436 kcal (2) G-P(sol) polarization free energy of solvation -9.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds