Wall clock time and date at job start Mon Mar 8 2021 07:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.47221 * 2 1 4 4 C 1.50701 * 109.46791 * 239.99863 * 2 1 3 5 5 C 1.38835 * 120.33935 * 300.02073 * 4 2 1 6 6 C 1.38340 * 118.50731 * 179.72773 * 5 4 2 7 7 C 1.39095 * 119.09894 * 0.47781 * 6 5 4 8 8 N 1.39007 * 119.70814 * 179.79059 * 7 6 5 9 9 C 1.46500 * 120.00016 * 359.73110 * 8 7 6 10 10 H 1.08999 * 112.84640 * 336.18886 * 9 8 7 11 11 C 1.53778 * 113.69512 * 107.45953 * 9 8 7 12 12 C 1.53784 * 87.08081 * 89.12825 * 11 9 8 13 13 H 1.09004 * 113.61451 * 270.88641 * 12 11 9 14 14 C 1.52992 * 113.61673 * 139.98135 * 12 11 9 15 15 N 1.46503 * 109.47166 * 87.50094 * 14 12 11 16 16 C 1.34431 * 126.82189 * 124.71307 * 15 14 12 17 17 N 1.30833 * 108.07596 * 179.89528 * 16 15 14 18 18 C 1.33241 * 109.82798 * 0.37754 * 17 16 15 19 19 N 1.30712 * 108.94903 * 359.76790 * 18 17 16 20 20 C 1.53778 * 113.61391 * 205.00087 * 9 8 7 21 21 N 1.32426 * 120.58785 * 359.51378 * 7 6 5 22 22 C 1.31947 * 121.62419 * 0.25515 * 21 7 6 23 23 H 0.96704 * 113.99979 * 60.00157 * 1 2 3 24 24 H 1.08993 * 109.47009 * 120.00630 * 2 1 3 25 25 H 1.48500 * 109.99921 * 298.67667 * 3 2 1 26 26 H 1.48496 * 109.99739 * 59.99826 * 3 2 1 27 27 H 1.08002 * 120.74684 * 359.96517 * 5 4 2 28 28 H 1.08005 * 120.45319 * 180.26682 * 6 5 4 29 29 H 0.97005 * 120.00054 * 179.72271 * 8 7 6 30 30 H 1.08993 * 113.61229 * 334.58149 * 11 9 8 31 31 H 1.09000 * 113.61263 * 203.67798 * 11 9 8 32 32 H 1.08996 * 109.47544 * 207.50317 * 14 12 11 33 33 H 1.09007 * 109.47088 * 327.50753 * 14 12 11 34 34 H 1.07994 * 125.96184 * 0.03984 * 16 15 14 35 35 H 1.08003 * 125.52698 * 179.72851 * 18 17 16 36 36 H 1.08998 * 113.61879 * 156.24852 * 20 9 8 37 37 H 1.08997 * 113.69304 * 25.34938 * 20 9 8 38 38 H 1.07995 * 119.57302 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.5998 -2.0394 -1.4573 6 6 2.0768 -2.6528 -2.6020 7 6 2.8761 -1.9244 -3.4768 8 7 3.3658 -2.5294 -4.6285 9 6 3.0443 -3.9300 -4.9135 10 1 2.7925 -4.4972 -4.0174 11 6 2.0369 -4.1117 -6.0610 12 6 3.2449 -4.1401 -7.0121 13 1 3.5382 -3.1550 -7.3751 14 6 3.1187 -5.1742 -8.1325 15 7 2.4153 -4.5776 -9.2708 16 6 2.8514 -4.5074 -10.5405 17 7 1.9341 -3.9041 -11.2520 18 6 0.9062 -3.5687 -10.4734 19 7 1.1541 -3.9600 -9.2511 20 6 4.0768 -4.6280 -5.8143 21 7 3.1702 -0.6580 -3.2250 22 6 2.7255 -0.0461 -2.1438 23 1 -0.3933 0.4417 -0.7651 24 1 1.7923 -0.5139 0.8899 25 1 1.5880 2.4585 -1.2243 26 1 1.5615 2.4678 1.2085 27 1 0.9803 -2.5811 -0.7579 28 1 1.8346 -3.6842 -2.8118 29 1 3.9203 -2.0242 -5.2435 30 1 1.3844 -3.2513 -6.2094 31 1 1.4922 -5.0549 -6.0186 32 1 4.1126 -5.4932 -8.4463 33 1 2.5580 -6.0359 -7.7701 34 1 3.7935 -4.8853 -10.9092 35 1 0.0132 -3.0560 -10.7993 36 1 4.0899 -5.7124 -5.7045 37 1 5.0717 -4.1855 -5.7645 38 1 2.9861 0.9876 -1.9711 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687812_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:48 Heat of formation + Delta-G solvation = 142.311228 kcal Electronic energy + Delta-G solvation = -21810.927149 eV Core-core repulsion = 18465.432063 eV Total energy + Delta-G solvation = -3345.495085 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.98755 -41.57009 -40.33411 -38.04470 -35.89237 -34.36516 -33.38474 -32.16903 -31.25199 -28.98895 -26.71915 -26.37545 -25.08683 -24.24667 -22.87570 -22.80500 -22.24676 -20.30923 -18.94103 -18.56341 -18.18695 -17.45460 -16.81423 -16.55561 -16.44950 -16.23835 -15.92795 -15.71068 -15.38434 -15.17532 -14.87808 -14.62936 -14.39801 -14.04958 -13.97854 -13.49956 -13.33938 -13.17371 -12.82284 -12.51335 -12.16443 -12.08336 -11.81849 -11.24627 -11.08261 -10.97876 -10.80829 -10.79112 -10.56202 -10.54256 -10.42088 -8.72405 -4.93277 0.19720 0.37614 0.69851 1.32161 1.46202 1.59237 1.94780 1.99893 2.04280 2.78761 3.32619 3.42160 3.46516 3.52415 3.57408 3.65453 3.75652 3.76916 3.95861 3.98985 4.05729 4.11104 4.24029 4.30512 4.42579 4.56247 4.59255 4.66525 4.74657 4.78079 4.84172 4.98652 5.03328 5.07820 5.19266 5.30588 5.35010 5.44750 5.55377 5.94796 6.03678 6.47096 6.49490 7.11354 7.12771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.062 4.062 3 Si 0.756 3.244 4 C -0.234 4.234 5 C -0.012 4.012 6 C -0.240 4.240 7 C 0.396 3.604 8 N -0.703 5.703 9 C 0.123 3.877 10 H 0.110 0.890 11 C -0.141 4.141 12 C -0.115 4.115 13 H 0.075 0.925 14 C 0.130 3.870 15 N -0.378 5.378 16 C 0.254 3.746 17 N -0.586 5.586 18 C 0.181 3.819 19 N -0.342 5.342 20 C -0.117 4.117 21 N -0.567 5.567 22 C 0.145 3.855 23 H 0.384 0.616 24 H 0.128 0.872 25 H -0.287 1.287 26 H -0.299 1.299 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.404 0.596 30 H 0.043 0.957 31 H 0.101 0.899 32 H 0.140 0.860 33 H 0.101 0.899 34 H 0.258 0.742 35 H 0.228 0.772 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.533 -5.593 0.910 7.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.172 4.172 3 Si 0.662 3.338 4 C -0.239 4.239 5 C -0.038 4.038 6 C -0.265 4.265 7 C 0.160 3.840 8 N -0.334 5.334 9 C 0.017 3.983 10 H 0.127 0.873 11 C -0.180 4.180 12 C -0.135 4.135 13 H 0.094 0.906 14 C 0.010 3.990 15 N -0.168 5.168 16 C -0.042 4.042 17 N -0.314 5.314 18 C -0.121 4.121 19 N -0.171 5.171 20 C -0.156 4.156 21 N -0.285 5.285 22 C -0.012 4.012 23 H 0.233 0.767 24 H 0.145 0.855 25 H -0.214 1.214 26 H -0.227 1.227 27 H 0.165 0.835 28 H 0.169 0.831 29 H 0.240 0.760 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.158 0.842 33 H 0.119 0.881 34 H 0.274 0.726 35 H 0.244 0.756 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.463 -4.714 1.169 7.310 hybrid contribution -1.548 -0.033 -0.394 1.598 sum 3.915 -4.747 0.775 6.202 Atomic orbital electron populations 1.86561 1.18729 1.80263 1.50103 1.24899 0.83118 1.11041 0.98170 0.94260 0.90482 0.72618 0.76420 1.20978 1.05771 0.96720 1.00419 1.21412 0.93851 0.93350 0.95170 1.21691 1.04955 1.02658 0.97191 1.18634 0.89560 0.88414 0.87384 1.44270 1.55465 1.11902 1.21769 1.22018 0.97125 0.80860 0.98312 0.87259 1.23495 0.96393 1.02409 0.95682 1.22748 0.98119 0.98674 0.93920 0.90617 1.22284 0.98113 0.95413 0.83170 1.50797 1.13178 1.42948 1.09909 1.26892 1.00630 0.95305 0.81349 1.70536 1.03809 1.21224 1.35842 1.26421 0.99570 0.99275 0.86869 1.77997 0.98621 1.17970 1.22478 1.23314 0.97757 1.02803 0.91706 1.67143 1.28531 1.09901 1.22906 1.22457 0.91703 0.99282 0.87745 0.76686 0.85474 1.21417 1.22705 0.83544 0.83118 0.76039 0.93834 0.88096 0.84217 0.88056 0.72613 0.75576 0.85476 0.89752 0.81694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.55 12.78 -148.98 -1.90 -3.45 16 2 C -0.06 0.02 2.84 71.24 0.20 0.22 16 3 Si 0.76 -0.73 29.82 68.60 2.05 1.32 16 4 C -0.23 -0.34 5.40 -19.76 -0.11 -0.44 16 5 C -0.01 -0.01 9.76 22.44 0.22 0.21 16 6 C -0.24 -0.25 9.28 22.50 0.21 -0.04 16 7 C 0.40 1.45 7.65 133.04 1.02 2.47 16 8 N -0.70 0.52 5.44 -322.07 -1.75 -1.24 16 9 C 0.12 -0.75 4.10 45.52 0.19 -0.56 16 10 H 0.11 -0.85 6.11 -2.39 -0.01 -0.87 16 11 C -0.14 0.56 7.43 31.12 0.23 0.79 16 12 C -0.12 0.83 3.73 -10.27 -0.04 0.79 16 13 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 14 C 0.13 -1.18 6.39 86.38 0.55 -0.63 16 15 N -0.38 0.31 3.69 -352.07 -1.30 -0.99 16 16 C 0.25 -0.29 12.63 180.36 2.28 1.98 16 17 N -0.59 -3.66 11.19 -204.00 -2.28 -5.94 16 18 C 0.18 1.06 13.03 180.77 2.36 3.41 16 19 N -0.34 -2.03 12.57 -61.24 -0.77 -2.80 16 20 C -0.12 1.30 7.39 31.12 0.23 1.53 16 21 N -0.57 -3.68 10.39 -193.26 -2.01 -5.69 16 22 C 0.15 0.47 9.84 84.64 0.83 1.30 16 23 H 0.38 -0.74 8.70 -74.05 -0.64 -1.38 16 24 H 0.13 -0.31 7.96 -2.39 -0.02 -0.33 16 25 H -0.29 -1.06 7.11 99.48 0.71 -0.36 16 26 H -0.30 -1.90 7.11 99.48 0.71 -1.19 16 27 H 0.15 -0.23 8.06 -2.91 -0.02 -0.25 16 28 H 0.15 -0.49 6.04 -2.91 -0.02 -0.51 16 29 H 0.40 -0.21 8.83 -92.70 -0.82 -1.03 16 30 H 0.04 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.10 -0.57 7.90 -2.39 -0.02 -0.59 16 32 H 0.14 -2.25 8.09 -2.39 -0.02 -2.27 16 33 H 0.10 -1.05 7.84 -2.38 -0.02 -1.07 16 34 H 0.26 -2.95 8.06 -2.91 -0.02 -2.97 16 35 H 0.23 0.14 8.06 -2.91 -0.02 0.11 16 36 H 0.13 -1.96 8.10 -2.39 -0.02 -1.98 16 37 H 0.08 -0.90 8.14 -2.39 -0.02 -0.92 16 38 H 0.17 -0.10 4.88 -2.91 -0.01 -0.11 16 Total: 0.00 -23.47 322.61 -0.12 -23.59 By element: Atomic # 1 Polarization: -15.50 SS G_CDS: -0.32 Total: -15.82 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 8.17 Total: 11.02 kcal Atomic # 7 Polarization: -8.54 SS G_CDS: -8.11 Total: -16.66 kcal Atomic # 8 Polarization: -1.55 SS G_CDS: -1.90 Total: -3.45 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: 2.05 Total: 1.32 kcal Total: -23.47 -0.12 -23.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687812_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.903 kcal (2) G-P(sol) polarization free energy of solvation -23.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds