Wall clock time and date at job start Mon Mar 8 2021 07:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 5 5 C 1.33332 * 125.95431 * 64.99487 * 4 2 1 6 6 N 1.32123 * 114.57885 * 180.02562 * 5 4 2 7 7 C 1.29690 * 116.86664 * 359.97438 * 6 5 4 8 8 N 1.38610 * 124.94789 * 179.97438 * 7 6 5 9 9 C 1.46501 * 120.00003 * 0.03395 * 8 7 6 10 10 H 1.09001 * 112.84718 * 336.18971 * 9 8 7 11 11 C 1.53780 * 113.61368 * 107.49982 * 9 8 7 12 12 C 1.53775 * 87.08220 * 89.11418 * 11 9 8 13 13 H 1.09001 * 113.61795 * 270.88156 * 12 11 9 14 14 C 1.53007 * 113.68998 * 139.98820 * 12 11 9 15 15 N 1.46499 * 109.46879 * 87.46410 * 14 12 11 16 16 C 1.34431 * 126.81807 * 124.70631 * 15 14 12 17 17 N 1.30831 * 108.07452 * 179.89022 * 16 15 14 18 18 C 1.33248 * 109.83157 * 0.38892 * 17 16 15 19 19 N 1.30718 * 108.93900 * 359.75850 * 18 17 16 20 20 C 1.53778 * 113.61304 * 204.99685 * 9 8 7 21 21 S 1.70969 * 110.10147 * 359.72994 * 7 6 5 22 22 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 23 23 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 24 24 H 1.48497 * 109.99842 * 299.99834 * 3 2 1 25 25 H 1.48498 * 109.99736 * 61.31824 * 3 2 1 26 26 H 1.07995 * 122.71024 * 359.97438 * 5 4 2 27 27 H 0.96996 * 119.99548 * 180.02562 * 8 7 6 28 28 H 1.09005 * 113.60846 * 203.66214 * 11 9 8 29 29 H 1.08997 * 113.61457 * 334.56159 * 11 9 8 30 30 H 1.08999 * 109.47170 * 207.46287 * 14 12 11 31 31 H 1.08997 * 109.46938 * 327.46570 * 14 12 11 32 32 H 1.07997 * 125.96487 * 0.04211 * 16 15 14 33 33 H 1.07990 * 125.53022 * 179.79753 * 18 17 16 34 34 H 1.09004 * 113.61278 * 25.42898 * 20 9 8 35 35 H 1.08996 * 113.61612 * 156.25043 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7621 -2.0026 1.5121 6 7 2.2973 -2.3903 2.6563 7 6 2.9109 -1.4847 3.3529 8 7 3.5296 -1.7058 4.5734 9 6 3.5207 -3.0450 5.1672 10 1 2.6946 -3.6605 4.8110 11 6 4.8856 -3.7516 5.1139 12 6 5.1908 -3.0942 6.4701 13 1 5.6540 -2.1112 6.3845 14 6 5.9252 -4.0139 7.4477 15 7 7.3697 -3.9053 7.2289 16 6 8.3022 -3.5939 8.1458 17 7 9.4700 -3.6027 7.5562 18 6 9.3233 -3.9056 6.2669 19 7 8.0547 -4.0997 6.0185 20 6 3.6708 -3.0412 6.6977 21 16 2.8512 0.0200 2.5434 22 1 -0.3933 0.4417 0.7650 23 1 1.7924 -0.5139 -0.8900 24 1 1.5616 2.4678 -1.2085 25 1 1.5880 2.4585 1.2242 26 1 1.2299 -2.6777 0.8584 27 1 3.9686 -0.9738 5.0342 28 1 4.8166 -4.8384 5.1611 29 1 5.5269 -3.4019 4.3049 30 1 5.6894 -3.7196 8.4704 31 1 5.6094 -5.0443 7.2842 32 1 8.1195 -3.3769 9.1879 33 1 10.1227 -3.9795 5.5447 34 1 3.3315 -2.1179 7.1674 35 1 3.2686 -3.9331 7.1781 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14687812_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:51 Heat of formation + Delta-G solvation = 147.004190 kcal Electronic energy + Delta-G solvation = -20378.782938 eV Core-core repulsion = 17122.643601 eV Total energy + Delta-G solvation = -3256.139337 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.99463 -41.14326 -40.19429 -37.98188 -35.93915 -34.29287 -32.13054 -31.25161 -29.23922 -26.94376 -26.57070 -25.19760 -24.15078 -22.90187 -22.53789 -21.52189 -20.17086 -19.66112 -18.37403 -18.13379 -17.20893 -16.86298 -16.69391 -16.39860 -16.09334 -15.81379 -15.70526 -15.39014 -15.19911 -14.94937 -14.74812 -14.22973 -13.86696 -13.70271 -13.30918 -13.01482 -12.84994 -12.41233 -12.38501 -12.03707 -11.95594 -11.45283 -11.13554 -10.92760 -10.91195 -10.73281 -10.60975 -10.25538 -10.21091 -8.77954 -5.05342 -0.04773 0.00582 0.67677 0.67973 1.24156 1.30570 1.54224 1.89658 2.01156 2.04603 2.05438 3.08048 3.23769 3.33980 3.38759 3.40560 3.58784 3.65756 3.83719 3.91599 3.94932 3.97402 4.20925 4.38158 4.47145 4.52966 4.53851 4.59153 4.73476 4.81841 4.92590 5.00540 5.20586 5.30218 5.48943 5.81106 5.82191 5.99276 6.35248 6.98716 7.14541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.017 4.017 3 Si 0.653 3.347 4 C -0.304 4.304 5 C 0.120 3.880 6 N -0.548 5.548 7 C 0.328 3.672 8 N -0.676 5.676 9 C 0.136 3.864 10 H 0.109 0.891 11 C -0.135 4.135 12 C -0.123 4.123 13 H 0.094 0.906 14 C 0.137 3.863 15 N -0.379 5.379 16 C 0.251 3.749 17 N -0.547 5.547 18 C 0.196 3.804 19 N -0.312 5.312 20 C -0.138 4.138 21 S 0.088 5.912 22 H 0.376 0.624 23 H 0.126 0.874 24 H -0.237 1.237 25 H -0.243 1.243 26 H 0.176 0.824 27 H 0.413 0.587 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.218 0.782 33 H 0.216 0.784 34 H 0.079 0.921 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 1.046 3.897 4.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.131 4.131 3 Si 0.552 3.448 4 C -0.427 4.427 5 C -0.031 4.031 6 N -0.273 5.273 7 C -0.043 4.043 8 N -0.314 5.314 9 C 0.028 3.972 10 H 0.127 0.873 11 C -0.174 4.174 12 C -0.142 4.142 13 H 0.112 0.888 14 C 0.015 3.985 15 N -0.170 5.170 16 C -0.046 4.046 17 N -0.274 5.274 18 C -0.107 4.107 19 N -0.139 5.139 20 C -0.177 4.177 21 S 0.337 5.663 22 H 0.224 0.776 23 H 0.143 0.857 24 H -0.160 1.160 25 H -0.167 1.167 26 H 0.193 0.807 27 H 0.251 0.749 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.234 0.766 33 H 0.233 0.767 34 H 0.098 0.902 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.053 1.742 3.289 3.723 hybrid contribution -1.288 -0.480 0.505 1.465 sum -1.341 1.262 3.794 4.217 Atomic orbital electron populations 1.86620 1.17515 1.79920 1.49187 1.24075 0.83466 1.09841 0.95677 0.95153 0.91838 0.75213 0.82585 1.25524 1.14924 0.98285 1.03940 1.21347 0.96573 0.93111 0.92081 1.66480 1.18698 1.33533 1.08623 1.23684 0.95368 0.93249 0.91955 1.43670 1.59007 1.11281 1.17468 1.21865 0.99273 0.83336 0.92769 0.87343 1.23451 0.96679 1.00491 0.96777 1.22911 0.95174 0.99636 0.96482 0.88775 1.21918 0.74122 1.01716 1.00703 1.50596 1.08421 1.51239 1.06716 1.26125 0.84088 0.96403 0.97987 1.70565 1.24997 1.24503 1.07324 1.26077 0.93851 0.97639 0.93129 1.78094 1.06927 1.25126 1.03766 1.23395 0.94394 1.03951 0.95990 1.84051 1.55101 1.11371 1.15732 0.77592 0.85666 1.16049 1.16731 0.80667 0.74928 0.88831 0.90502 0.87790 0.88898 0.76607 0.76744 0.90249 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.62 12.88 -35.23 -0.45 -1.07 16 2 C -0.02 0.00 2.99 36.00 0.11 0.11 16 3 Si 0.65 -0.35 31.07 -169.99 -5.28 -5.63 16 4 C -0.30 -0.23 5.73 -36.02 -0.21 -0.43 16 5 C 0.12 0.22 11.24 -19.14 -0.22 0.01 16 6 N -0.55 -1.54 9.83 -15.21 -0.15 -1.69 16 7 C 0.33 0.36 8.09 -87.68 -0.71 -0.35 16 8 N -0.68 0.79 5.42 -54.99 -0.30 0.49 16 9 C 0.14 -0.24 4.44 -67.12 -0.30 -0.54 16 10 H 0.11 -0.02 7.66 -51.93 -0.40 -0.42 16 11 C -0.13 0.20 7.43 -25.92 -0.19 0.01 16 12 C -0.12 0.42 3.72 -89.81 -0.33 0.08 16 13 H 0.09 -0.23 8.14 -51.93 -0.42 -0.65 16 14 C 0.14 -0.51 6.39 -4.04 -0.03 -0.54 16 15 N -0.38 0.14 3.69 -62.63 -0.23 -0.09 16 16 C 0.25 -0.11 12.63 -90.65 -1.14 -1.26 16 17 N -0.55 -1.41 11.19 -15.83 -0.18 -1.59 16 18 C 0.20 0.39 13.03 -91.80 -1.20 -0.81 16 19 N -0.31 -0.70 12.57 29.29 0.37 -0.34 16 20 C -0.14 0.60 7.39 -25.92 -0.19 0.41 16 21 S 0.09 0.00 20.59 -107.50 -2.21 -2.21 16 22 H 0.38 -0.55 8.70 45.56 0.40 -0.15 16 23 H 0.13 -0.13 7.96 -51.93 -0.41 -0.54 16 24 H -0.24 -0.50 7.11 56.52 0.40 -0.10 16 25 H -0.24 -0.31 7.11 56.52 0.40 0.10 16 26 H 0.18 0.12 8.06 -52.49 -0.42 -0.30 16 27 H 0.41 -1.24 8.82 -40.82 -0.36 -1.60 16 28 H 0.09 -0.14 7.90 -51.93 -0.41 -0.55 16 29 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.10 -0.67 8.09 -51.93 -0.42 -1.09 16 31 H 0.09 -0.36 7.85 -51.93 -0.41 -0.77 16 32 H 0.22 -1.05 8.06 -52.49 -0.42 -1.47 16 33 H 0.22 -0.20 8.06 -52.49 -0.42 -0.62 16 34 H 0.08 -0.37 8.14 -51.93 -0.42 -0.79 16 35 H 0.10 -0.56 8.10 -51.93 -0.42 -0.98 16 LS Contribution 318.21 15.07 4.80 4.80 Total: 0.00 -8.69 318.21 -12.21 -20.91 By element: Atomic # 1 Polarization: -6.12 SS G_CDS: -4.17 Total: -10.28 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -4.41 Total: -3.30 kcal Atomic # 7 Polarization: -2.72 SS G_CDS: -0.49 Total: -3.21 kcal Atomic # 8 Polarization: -0.62 SS G_CDS: -0.45 Total: -1.07 kcal Atomic # 14 Polarization: -0.35 SS G_CDS: -5.28 Total: -5.63 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.21 Total: -2.21 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -8.69 -12.21 -20.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687812_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.913 kcal (2) G-P(sol) polarization free energy of solvation -8.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds