Wall clock time and date at job start Mon Mar 8 2021 07:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 5 5 C 1.33332 * 125.95431 * 64.99487 * 4 2 1 6 6 N 1.32123 * 114.57885 * 180.02562 * 5 4 2 7 7 C 1.29690 * 116.86664 * 359.97438 * 6 5 4 8 8 N 1.38610 * 124.94789 * 179.97438 * 7 6 5 9 9 C 1.46501 * 120.00003 * 0.03395 * 8 7 6 10 10 H 1.09001 * 112.84718 * 336.18971 * 9 8 7 11 11 C 1.53780 * 113.61368 * 107.49982 * 9 8 7 12 12 C 1.53775 * 87.08220 * 89.11418 * 11 9 8 13 13 H 1.09001 * 113.61795 * 270.88156 * 12 11 9 14 14 C 1.53007 * 113.68998 * 139.98820 * 12 11 9 15 15 N 1.46499 * 109.46879 * 87.46410 * 14 12 11 16 16 C 1.34431 * 126.81807 * 124.70631 * 15 14 12 17 17 N 1.30831 * 108.07452 * 179.89022 * 16 15 14 18 18 C 1.33248 * 109.83157 * 0.38892 * 17 16 15 19 19 N 1.30718 * 108.93900 * 359.75850 * 18 17 16 20 20 C 1.53778 * 113.61304 * 204.99685 * 9 8 7 21 21 S 1.70969 * 110.10147 * 359.72994 * 7 6 5 22 22 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 23 23 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 24 24 H 1.48497 * 109.99842 * 299.99834 * 3 2 1 25 25 H 1.48498 * 109.99736 * 61.31824 * 3 2 1 26 26 H 1.07995 * 122.71024 * 359.97438 * 5 4 2 27 27 H 0.96996 * 119.99548 * 180.02562 * 8 7 6 28 28 H 1.09005 * 113.60846 * 203.66214 * 11 9 8 29 29 H 1.08997 * 113.61457 * 334.56159 * 11 9 8 30 30 H 1.08999 * 109.47170 * 207.46287 * 14 12 11 31 31 H 1.08997 * 109.46938 * 327.46570 * 14 12 11 32 32 H 1.07997 * 125.96487 * 0.04211 * 16 15 14 33 33 H 1.07990 * 125.53022 * 179.79753 * 18 17 16 34 34 H 1.09004 * 113.61278 * 25.42898 * 20 9 8 35 35 H 1.08996 * 113.61612 * 156.25043 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7621 -2.0026 1.5121 6 7 2.2973 -2.3903 2.6563 7 6 2.9109 -1.4847 3.3529 8 7 3.5296 -1.7058 4.5734 9 6 3.5207 -3.0450 5.1672 10 1 2.6946 -3.6605 4.8110 11 6 4.8856 -3.7516 5.1139 12 6 5.1908 -3.0942 6.4701 13 1 5.6540 -2.1112 6.3845 14 6 5.9252 -4.0139 7.4477 15 7 7.3697 -3.9053 7.2289 16 6 8.3022 -3.5939 8.1458 17 7 9.4700 -3.6027 7.5562 18 6 9.3233 -3.9056 6.2669 19 7 8.0547 -4.0997 6.0185 20 6 3.6708 -3.0412 6.6977 21 16 2.8512 0.0200 2.5434 22 1 -0.3933 0.4417 0.7650 23 1 1.7924 -0.5139 -0.8900 24 1 1.5616 2.4678 -1.2085 25 1 1.5880 2.4585 1.2242 26 1 1.2299 -2.6777 0.8584 27 1 3.9686 -0.9738 5.0342 28 1 4.8166 -4.8384 5.1611 29 1 5.5269 -3.4019 4.3049 30 1 5.6894 -3.7196 8.4704 31 1 5.6094 -5.0443 7.2842 32 1 8.1195 -3.3769 9.1879 33 1 10.1227 -3.9795 5.5447 34 1 3.3315 -2.1179 7.1674 35 1 3.2686 -3.9331 7.1781 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687812_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:51 Heat of formation + Delta-G solvation = 149.127204 kcal Electronic energy + Delta-G solvation = -20378.690877 eV Core-core repulsion = 17122.643601 eV Total energy + Delta-G solvation = -3256.047276 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.96045 -41.08868 -40.14670 -38.02254 -35.85787 -34.22679 -32.13975 -31.28990 -29.10115 -26.80097 -26.53317 -25.15359 -24.11906 -22.84270 -22.48678 -21.45446 -20.13331 -19.62112 -18.27055 -18.14868 -17.17661 -16.74771 -16.63261 -16.40511 -16.09334 -15.79517 -15.66290 -15.29771 -15.13766 -14.99313 -14.63550 -14.06474 -13.92368 -13.53101 -13.17252 -12.99054 -12.79323 -12.49657 -12.23827 -12.03703 -11.86008 -11.25056 -11.09169 -10.95706 -10.94147 -10.77150 -10.52710 -10.31889 -10.25848 -8.77635 -5.04253 -0.10020 -0.01912 0.63038 0.72834 1.23480 1.47970 1.52080 1.86043 1.93072 2.03007 2.11722 3.32518 3.37061 3.44668 3.55371 3.58578 3.70647 3.79430 3.89933 3.99482 4.13828 4.24008 4.46154 4.55061 4.59582 4.65706 4.68828 4.77209 4.80369 4.98954 5.05956 5.06560 5.26804 5.37487 5.47978 5.85694 5.97161 6.10793 6.42498 6.96946 7.15847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.022 4.022 3 Si 0.720 3.280 4 C -0.305 4.305 5 C 0.104 3.896 6 N -0.577 5.577 7 C 0.317 3.683 8 N -0.668 5.668 9 C 0.129 3.871 10 H 0.091 0.909 11 C -0.136 4.136 12 C -0.111 4.111 13 H 0.086 0.914 14 C 0.131 3.869 15 N -0.378 5.378 16 C 0.255 3.745 17 N -0.586 5.586 18 C 0.183 3.817 19 N -0.343 5.343 20 C -0.117 4.117 21 S 0.110 5.890 22 H 0.386 0.614 23 H 0.135 0.865 24 H -0.274 1.274 25 H -0.264 1.264 26 H 0.179 0.821 27 H 0.422 0.578 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.142 0.858 31 H 0.096 0.904 32 H 0.258 0.742 33 H 0.229 0.771 34 H 0.091 0.909 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 1.375 5.593 5.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.135 4.135 3 Si 0.622 3.378 4 C -0.428 4.428 5 C -0.046 4.046 6 N -0.303 5.303 7 C -0.053 4.053 8 N -0.308 5.308 9 C 0.021 3.979 10 H 0.109 0.891 11 C -0.176 4.176 12 C -0.130 4.130 13 H 0.105 0.895 14 C 0.010 3.990 15 N -0.168 5.168 16 C -0.041 4.041 17 N -0.314 5.314 18 C -0.120 4.120 19 N -0.171 5.171 20 C -0.156 4.156 21 S 0.360 5.640 22 H 0.235 0.765 23 H 0.152 0.848 24 H -0.199 1.199 25 H -0.190 1.190 26 H 0.196 0.804 27 H 0.261 0.739 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.160 0.840 31 H 0.114 0.886 32 H 0.274 0.726 33 H 0.245 0.755 34 H 0.110 0.890 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.318 2.062 5.011 5.428 hybrid contribution -1.245 -0.580 -0.026 1.374 sum -1.563 1.482 4.985 5.431 Atomic orbital electron populations 1.86591 1.18165 1.80281 1.49977 1.24266 0.83036 1.10398 0.95790 0.94353 0.90812 0.73254 0.79333 1.25623 1.14754 0.98099 1.04278 1.21479 0.97145 0.93760 0.92250 1.66478 1.19848 1.34635 1.09358 1.23924 0.95303 0.93604 0.92505 1.43757 1.58366 1.11886 1.16762 1.21924 0.98294 0.82837 0.94854 0.89123 1.23411 0.96455 1.00460 0.97256 1.22770 0.96011 0.99014 0.95226 0.89524 1.22256 0.72256 1.01919 1.02550 1.50776 1.09519 1.50626 1.05924 1.26893 0.83252 0.94670 0.99275 1.70543 1.26950 1.26111 1.07773 1.26430 0.94299 0.97690 0.93587 1.78019 1.07307 1.26091 1.05696 1.23321 0.93197 1.05375 0.93673 1.83896 1.54665 1.10397 1.15079 0.76478 0.84764 1.19942 1.18962 0.80373 0.73872 0.89054 0.93476 0.83996 0.88560 0.72605 0.75524 0.89043 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.47 12.88 -148.98 -1.92 -3.39 16 2 C -0.02 0.00 2.99 71.23 0.21 0.21 16 3 Si 0.72 -0.62 31.07 68.60 2.13 1.51 16 4 C -0.30 -0.61 5.73 24.57 0.14 -0.47 16 5 C 0.10 0.50 11.24 83.54 0.94 1.44 16 6 N -0.58 -3.95 9.83 -202.02 -1.99 -5.94 16 7 C 0.32 0.93 8.09 179.32 1.45 2.38 16 8 N -0.67 1.32 5.42 -327.90 -1.78 -0.46 16 9 C 0.13 -0.42 4.44 45.52 0.20 -0.22 16 10 H 0.09 0.06 7.66 -2.39 -0.02 0.05 16 11 C -0.14 0.29 7.43 31.12 0.23 0.52 16 12 C -0.11 0.84 3.72 -10.27 -0.04 0.80 16 13 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 14 C 0.13 -1.19 6.39 86.38 0.55 -0.64 16 15 N -0.38 0.53 3.69 -352.06 -1.30 -0.77 16 16 C 0.26 -0.51 12.63 180.36 2.28 1.77 16 17 N -0.59 -3.13 11.19 -204.00 -2.28 -5.41 16 18 C 0.18 0.91 13.03 180.76 2.36 3.27 16 19 N -0.34 -1.83 12.57 -61.24 -0.77 -2.60 16 20 C -0.12 1.20 7.39 31.12 0.23 1.43 16 21 S 0.11 0.03 20.59 -56.49 -1.16 -1.13 16 22 H 0.39 -0.98 8.70 -74.06 -0.64 -1.62 16 23 H 0.13 -0.25 7.96 -2.39 -0.02 -0.27 16 24 H -0.27 -1.43 7.11 99.48 0.71 -0.72 16 25 H -0.26 -0.68 7.11 99.48 0.71 0.03 16 26 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 27 H 0.42 -2.60 8.82 -92.71 -0.82 -3.41 16 28 H 0.09 -0.18 7.90 -2.38 -0.02 -0.20 16 29 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.14 -2.34 8.09 -2.39 -0.02 -2.36 16 31 H 0.10 -0.89 7.85 -2.39 -0.02 -0.91 16 32 H 0.26 -3.17 8.06 -2.91 -0.02 -3.19 16 33 H 0.23 -0.06 8.06 -2.92 -0.02 -0.09 16 34 H 0.09 -1.07 8.14 -2.38 -0.02 -1.09 16 35 H 0.12 -1.60 8.10 -2.39 -0.02 -1.62 16 Total: 0.00 -22.14 318.21 -0.80 -22.94 By element: Atomic # 1 Polarization: -14.96 SS G_CDS: -0.29 Total: -15.25 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 8.55 Total: 10.50 kcal Atomic # 7 Polarization: -7.07 SS G_CDS: -8.12 Total: -15.18 kcal Atomic # 8 Polarization: -1.47 SS G_CDS: -1.92 Total: -3.39 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: 2.13 Total: 1.51 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.16 Total: -1.13 kcal Total: -22.14 -0.80 -22.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687812_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.072 kcal (2) G-P(sol) polarization free energy of solvation -22.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds