Wall clock time and date at job start Mon Mar 8 2021 07:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33325 * 125.95249 * 2 1 4 4 C 1.50700 * 122.71157 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47252 * 113.53805 * 4 3 2 6 6 Si 1.86301 * 109.47207 * 233.53982 * 4 3 2 7 7 N 1.32121 * 114.58046 * 180.28950 * 3 2 1 8 8 C 1.29694 * 116.86528 * 359.48408 * 7 3 2 9 9 N 1.38606 * 124.94943 * 180.22708 * 8 7 3 10 10 C 1.46504 * 119.99833 * 180.27993 * 9 8 7 11 11 H 1.09003 * 112.84946 * 25.33439 * 10 9 8 12 12 C 1.53784 * 113.60974 * 156.52831 * 10 9 8 13 13 C 1.53782 * 87.08190 * 89.11591 * 12 10 9 14 14 H 1.08998 * 113.61040 * 270.88242 * 13 12 10 15 15 C 1.52992 * 113.61396 * 139.97579 * 13 12 10 16 16 N 1.46502 * 109.47110 * 174.99867 * 15 13 12 17 17 C 1.34429 * 126.81943 * 125.00096 * 16 15 13 18 18 N 1.30841 * 108.07560 * 179.97438 * 17 16 15 19 19 C 1.33245 * 109.82670 * 359.97438 * 18 17 16 20 20 N 1.30713 * 108.94772 * 359.75838 * 19 18 17 21 21 C 1.53774 * 113.61323 * 254.13446 * 10 9 8 22 22 S 1.70967 * 110.09919 * 0.49263 * 8 7 3 23 23 H 1.08999 * 109.47087 * 84.87137 * 1 2 3 24 24 H 1.09000 * 109.47104 * 204.87063 * 1 2 3 25 25 H 1.08997 * 109.46926 * 324.86650 * 1 2 3 26 26 H 1.09003 * 109.46741 * 353.53846 * 4 3 2 27 27 H 0.96697 * 114.00354 * 59.99857 * 5 4 3 28 28 H 1.48493 * 109.99986 * 58.67780 * 6 4 3 29 29 H 1.48503 * 109.99721 * 179.97438 * 6 4 3 30 30 H 0.97002 * 119.99823 * 0.27554 * 9 8 7 31 31 H 1.09000 * 113.60563 * 203.66495 * 12 10 9 32 32 H 1.08999 * 113.61895 * 334.56195 * 12 10 9 33 33 H 1.08996 * 109.47574 * 295.00222 * 15 13 12 34 34 H 1.09004 * 109.47426 * 55.00376 * 15 13 12 35 35 H 1.07999 * 125.96928 * 0.02562 * 17 16 15 36 36 H 1.07996 * 125.52629 * 179.97438 * 19 18 17 37 37 H 1.09002 * 113.61432 * 25.42875 * 21 10 9 38 38 H 1.08999 * 113.61728 * 156.33988 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 2.0697 3.1221 1.2358 6 14 2.4872 3.4416 -1.4121 7 7 3.5850 0.8188 -0.0061 8 6 3.9315 -0.4310 -0.0008 9 7 5.2384 -0.8927 -0.0012 10 6 5.5065 -2.3330 -0.0011 11 1 4.6912 -2.9153 -0.4304 12 6 6.8897 -2.7021 -0.5628 13 6 7.4257 -2.5482 0.8703 14 1 7.7509 -1.5354 1.1083 15 6 8.4563 -3.6109 1.2566 16 7 8.9919 -3.3110 2.5868 17 6 9.0097 -4.1311 3.6518 18 7 9.5713 -3.4928 4.6463 19 6 9.9240 -2.2686 4.2561 20 7 9.5949 -2.1120 3.0008 21 6 5.9985 -2.8678 1.3541 22 16 2.5413 -1.4261 -0.0006 23 1 -0.3633 0.0919 -1.0235 24 1 -0.3633 -0.9324 0.4322 25 1 -0.3633 0.8404 0.5914 26 1 0.6580 2.4498 -0.1147 27 1 3.0196 3.1868 1.4049 28 1 2.1799 2.7696 -2.7001 29 1 1.9540 4.8275 -1.4229 30 1 5.9755 -0.2621 -0.0017 31 1 6.9482 -3.7217 -0.9437 32 1 7.2888 -1.9652 -1.2598 33 1 7.9801 -4.5912 1.2692 34 1 9.2684 -3.6108 0.5295 35 1 8.6278 -5.1409 3.6812 36 1 10.4069 -1.5273 4.8754 37 1 5.6787 -2.2645 2.2038 38 1 5.8140 -3.9326 1.4964 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687812_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:53 Heat of formation + Delta-G solvation = 142.915505 kcal Electronic energy + Delta-G solvation = -22395.921072 eV Core-core repulsion = 18984.066818 eV Total energy + Delta-G solvation = -3411.854255 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.105 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.96752 -41.20142 -40.48684 -37.63401 -35.99123 -34.45517 -32.74510 -32.14507 -29.41312 -28.61559 -26.76377 -25.84116 -24.76224 -24.28086 -22.91146 -22.51228 -20.77595 -20.42613 -18.84538 -18.33858 -17.96798 -17.56122 -16.88661 -16.63606 -16.39584 -15.94374 -15.78798 -15.46937 -15.36317 -15.06699 -14.99372 -14.28618 -14.21091 -14.11525 -13.77197 -13.57111 -13.47726 -13.30483 -13.02046 -12.73858 -12.50366 -12.14886 -12.00815 -11.73873 -11.46894 -11.04831 -10.94793 -10.77861 -10.72116 -10.50661 -10.45081 -10.06059 -8.68515 -4.95812 -0.09340 0.11287 0.67617 0.71924 1.22176 1.47622 1.58482 1.76270 1.86722 1.93365 2.02373 3.33743 3.35514 3.46455 3.47903 3.55358 3.60753 3.70587 3.92075 3.96863 4.13577 4.17363 4.21732 4.36639 4.39150 4.53198 4.60541 4.64259 4.74275 4.76992 4.85146 4.89179 4.95970 5.03397 5.14452 5.24503 5.33059 5.46619 5.70487 5.97529 6.27620 6.58312 6.85906 7.14862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.268 4.268 3 C 0.059 3.941 4 C -0.038 4.038 5 O -0.549 6.549 6 Si 0.774 3.226 7 N -0.558 5.558 8 C 0.311 3.689 9 N -0.671 5.671 10 C 0.118 3.882 11 H 0.104 0.896 12 C -0.116 4.116 13 C -0.119 4.119 14 H 0.079 0.921 15 C 0.131 3.869 16 N -0.376 5.376 17 C 0.256 3.744 18 N -0.587 5.587 19 C 0.185 3.815 20 N -0.349 5.349 21 C -0.146 4.146 22 S 0.128 5.872 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.123 0.877 27 H 0.392 0.608 28 H -0.294 1.294 29 H -0.280 1.280 30 H 0.415 0.585 31 H 0.133 0.867 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.259 0.741 36 H 0.229 0.771 37 H 0.048 0.952 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 -7.176 -3.538 8.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.391 4.391 3 C -0.071 4.071 4 C -0.150 4.150 5 O -0.356 6.356 6 Si 0.679 3.321 7 N -0.285 5.285 8 C -0.061 4.061 9 N -0.311 5.311 10 C 0.013 3.987 11 H 0.122 0.878 12 C -0.154 4.154 13 C -0.138 4.138 14 H 0.097 0.903 15 C 0.011 3.989 16 N -0.167 5.167 17 C -0.040 4.040 18 N -0.315 5.315 19 C -0.118 4.118 20 N -0.178 5.178 21 C -0.185 4.185 22 S 0.376 5.624 23 H 0.099 0.901 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.140 0.860 27 H 0.242 0.758 28 H -0.221 1.221 29 H -0.207 1.207 30 H 0.254 0.746 31 H 0.151 0.849 32 H 0.101 0.899 33 H 0.161 0.839 34 H 0.116 0.884 35 H 0.274 0.726 36 H 0.245 0.755 37 H 0.067 0.933 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.666 -7.074 -4.416 8.366 hybrid contribution -0.374 0.879 0.410 1.039 sum 0.292 -6.195 -4.006 7.383 Atomic orbital electron populations 1.20255 0.85900 1.03819 1.03279 1.25482 1.02258 0.93904 1.17462 1.20193 0.87245 0.97531 1.02176 1.24835 1.03316 0.89853 0.97035 1.86430 1.31023 1.79645 1.38548 0.92945 0.90562 0.75712 0.72888 1.65959 1.17122 1.17355 1.28092 1.23530 0.92685 0.91657 0.98200 1.43751 1.01024 1.07188 1.79094 1.22113 0.99647 0.78846 0.98127 0.87827 1.23320 0.91948 1.05160 0.95011 1.22854 0.93876 0.99315 0.97765 0.90257 1.22281 0.97368 1.00743 0.78511 1.50753 1.43544 1.09594 1.12764 1.26877 0.95515 0.99668 0.81963 1.70544 1.21481 1.07403 1.32059 1.26410 0.99030 0.95002 0.91349 1.77945 1.18971 1.05615 1.15253 1.23716 0.95140 1.03104 0.96586 1.83690 0.95616 1.09280 1.73764 0.90111 0.90326 0.90204 0.85991 0.75847 1.22107 1.20682 0.74641 0.84863 0.89945 0.83900 0.88388 0.72583 0.75483 0.93339 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.00 9.71 71.23 0.69 0.69 16 2 C -0.27 -1.16 6.57 24.57 0.16 -1.00 16 3 C 0.06 0.35 5.20 41.40 0.22 0.56 16 4 C -0.04 -0.17 2.84 71.24 0.20 0.03 16 5 O -0.55 -3.15 12.88 -148.98 -1.92 -5.07 16 6 Si 0.77 2.77 32.61 68.60 2.24 5.01 16 7 N -0.56 -3.14 9.76 -189.86 -1.85 -4.99 16 8 C 0.31 0.82 8.24 179.32 1.48 2.30 16 9 N -0.67 1.75 5.42 -327.89 -1.78 -0.03 16 10 C 0.12 -0.95 4.28 45.52 0.19 -0.76 16 11 H 0.10 -0.92 7.11 -2.39 -0.02 -0.94 16 12 C -0.12 1.42 7.38 31.12 0.23 1.65 16 13 C -0.12 1.04 3.77 -10.18 -0.04 1.00 16 14 H 0.08 -0.20 8.01 -2.39 -0.02 -0.22 16 15 C 0.13 -1.36 6.39 86.38 0.55 -0.81 16 16 N -0.38 0.72 3.69 -352.06 -1.30 -0.58 16 17 C 0.26 -0.56 12.63 180.36 2.28 1.71 16 18 N -0.59 -3.16 11.19 -204.00 -2.28 -5.44 16 19 C 0.18 0.92 13.03 180.76 2.36 3.27 16 20 N -0.35 -1.80 12.46 -61.25 -0.76 -2.56 16 21 C -0.15 1.23 7.45 31.21 0.23 1.46 16 22 S 0.13 0.14 21.71 -56.49 -1.23 -1.09 16 23 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 24 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 25 H 0.08 -0.01 7.17 -2.39 -0.02 -0.03 16 26 H 0.12 0.37 6.33 -2.39 -0.02 0.35 16 27 H 0.39 0.19 8.70 -74.06 -0.64 -0.46 16 28 H -0.29 -2.66 7.11 99.48 0.71 -1.95 16 29 H -0.28 -2.26 7.11 99.48 0.71 -1.56 16 30 H 0.41 -1.25 8.83 -92.71 -0.82 -2.06 16 31 H 0.13 -2.31 8.10 -2.39 -0.02 -2.33 16 32 H 0.08 -0.89 8.14 -2.39 -0.02 -0.91 16 33 H 0.14 -2.58 7.79 -2.39 -0.02 -2.60 16 34 H 0.10 -1.07 8.14 -2.38 -0.02 -1.08 16 35 H 0.26 -3.25 8.06 -2.91 -0.02 -3.27 16 36 H 0.23 -0.07 8.06 -2.91 -0.02 -0.10 16 37 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.12 -1.61 7.90 -2.39 -0.02 -1.62 16 Total: 0.00 -23.20 338.19 -0.65 -23.85 By element: Atomic # 1 Polarization: -18.90 SS G_CDS: -0.32 Total: -19.21 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 8.55 Total: 10.12 kcal Atomic # 7 Polarization: -5.64 SS G_CDS: -7.97 Total: -13.61 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: -1.92 Total: -5.07 kcal Atomic # 14 Polarization: 2.77 SS G_CDS: 2.24 Total: 5.01 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -1.23 Total: -1.09 kcal Total: -23.20 -0.65 -23.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687812_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.768 kcal (2) G-P(sol) polarization free energy of solvation -23.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds