Wall clock time and date at job start Mon Mar 8 2021 07:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.37989 * 120.32520 * 119.99784 * 4 2 1 6 6 N 1.32012 * 120.89764 * 179.97438 * 5 4 2 7 7 C 1.32341 * 121.64937 * 359.97438 * 6 5 4 8 8 N 1.39142 * 119.71855 * 179.97438 * 7 6 5 9 9 C 1.46497 * 119.99923 * 359.97438 * 8 7 6 10 10 H 1.09004 * 112.85397 * 25.33576 * 9 8 7 11 11 C 1.53781 * 113.61573 * 156.52987 * 9 8 7 12 12 C 1.53776 * 87.08130 * 89.11556 * 11 9 8 13 13 H 1.08997 * 113.61455 * 270.79903 * 12 11 9 14 14 C 1.52997 * 113.61341 * 139.98606 * 12 11 9 15 15 N 1.46499 * 109.47466 * 174.99825 * 14 12 11 16 16 C 1.34431 * 126.82657 * 124.99271 * 15 14 12 17 17 N 1.30827 * 108.08160 * 179.97438 * 16 15 14 18 18 C 1.33243 * 109.82887 * 0.02562 * 17 16 15 19 19 N 1.30711 * 108.94336 * 359.75168 * 18 17 16 20 20 C 1.53781 * 113.61868 * 254.13421 * 9 8 7 21 21 C 1.39342 * 120.56392 * 359.97438 * 7 6 5 22 22 F 1.35092 * 120.47468 * 180.02562 * 21 7 6 23 23 C 1.38447 * 119.05481 * 359.77077 * 21 7 6 24 24 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 25 25 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 26 26 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 27 27 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 28 28 H 1.07993 * 119.55176 * 359.97438 * 5 4 2 29 29 H 0.96995 * 120.00343 * 179.97438 * 8 7 6 30 30 H 1.09003 * 113.61762 * 203.66661 * 11 9 8 31 31 H 1.09004 * 113.61083 * 334.47738 * 11 9 8 32 32 H 1.09002 * 109.47146 * 295.00101 * 14 12 11 33 33 H 1.09003 * 109.47401 * 54.99686 * 14 12 11 34 34 H 1.08006 * 125.95798 * 0.02562 * 16 15 14 35 35 H 1.07993 * 125.52971 * 179.97438 * 18 17 16 36 36 H 1.09004 * 113.60933 * 25.43690 * 20 9 8 37 37 H 1.08999 * 113.61578 * 156.33074 * 20 9 8 38 38 H 1.07993 * 120.75909 * 180.24813 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7249 -0.0461 -2.1432 6 7 3.1715 -0.6575 -3.2247 7 6 2.8798 -1.9234 -3.4772 8 7 3.3717 -2.5279 -4.6298 9 6 4.2082 -1.7633 -5.5581 10 1 4.7299 -0.9369 -5.0753 11 6 5.1201 -2.6410 -6.4316 12 6 3.9621 -2.7018 -7.4415 13 1 3.2732 -3.5282 -7.2667 14 6 4.4149 -2.6043 -8.8997 15 7 3.2610 -2.7908 -9.7829 16 6 2.8426 -1.9551 -10.7492 17 7 1.7827 -2.4796 -11.3087 18 6 1.4950 -3.6443 -10.7289 19 7 2.3751 -3.8805 -9.7917 20 6 3.4828 -1.3613 -6.8531 21 6 2.0842 -2.6560 -2.5986 22 9 1.7879 -3.9483 -2.8579 23 6 1.6060 -2.0423 -1.4534 24 1 -0.3934 0.4418 -0.7650 25 1 1.7923 -0.5138 0.8899 26 1 1.5616 2.4678 1.2086 27 1 3.5346 1.7703 -0.0322 28 1 2.9843 0.9879 -1.9705 29 1 3.1608 -3.4556 -4.8188 30 1 6.0000 -2.1184 -6.8070 31 1 5.3600 -3.6044 -5.9816 32 1 4.8547 -1.6232 -9.0787 33 1 5.1563 -3.3772 -9.1024 34 1 3.3019 -1.0151 -11.0175 35 1 0.6709 -4.2902 -10.9930 36 1 2.4004 -1.2928 -6.7439 37 1 3.9157 -0.4894 -7.3435 38 1 0.9905 -2.5853 -0.7517 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14687812_17656566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:57 Heat of formation + Delta-G solvation = 94.703262 kcal Electronic energy + Delta-G solvation = -24258.985799 eV Core-core repulsion = 20441.972301 eV Total energy + Delta-G solvation = -3817.013497 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.123 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.90214 -42.98396 -41.58206 -40.50226 -38.02404 -36.01625 -34.47273 -33.20046 -32.12278 -31.32955 -29.12263 -26.97314 -26.52799 -25.44193 -24.12994 -23.05456 -22.91960 -22.39146 -20.46773 -19.52854 -18.56003 -18.31443 -18.24701 -17.56078 -17.07970 -16.90194 -16.53464 -16.27110 -16.09914 -15.87464 -15.56605 -15.39613 -15.24804 -15.03705 -14.71764 -14.37953 -14.12219 -13.93103 -13.71308 -13.52006 -13.35489 -12.96200 -12.65344 -12.27924 -12.11742 -11.99144 -11.60093 -11.31155 -10.90884 -10.73752 -10.71095 -10.69805 -10.52984 -10.49825 -8.83119 -5.12347 -0.11294 0.07572 0.69271 1.19032 1.31775 1.53954 1.84021 1.89935 2.06703 2.50305 2.99866 3.12071 3.23467 3.29070 3.31521 3.37232 3.41397 3.54474 3.62484 3.77989 3.80799 3.92393 3.97148 4.03538 4.24565 4.37212 4.37441 4.41623 4.47034 4.50901 4.64338 4.68291 4.83321 4.85379 4.93510 5.04178 5.29507 5.37108 5.49686 5.83153 5.90164 6.10222 6.49066 6.89081 7.15507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.055 4.055 3 Si 0.686 3.314 4 C -0.208 4.208 5 C 0.147 3.853 6 N -0.510 5.510 7 C 0.392 3.608 8 N -0.700 5.700 9 C 0.137 3.863 10 H 0.110 0.890 11 C -0.139 4.139 12 C -0.125 4.125 13 H 0.104 0.896 14 C 0.138 3.862 15 N -0.377 5.377 16 C 0.253 3.747 17 N -0.547 5.547 18 C 0.198 3.802 19 N -0.319 5.319 20 C -0.148 4.148 21 C -0.019 4.019 22 F -0.133 7.133 23 C -0.038 4.038 24 H 0.380 0.620 25 H 0.116 0.884 26 H -0.251 1.251 27 H -0.254 1.254 28 H 0.163 0.837 29 H 0.413 0.587 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.218 0.782 35 H 0.216 0.784 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 3.533 -0.810 4.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.167 4.167 3 Si 0.588 3.412 4 C -0.214 4.214 5 C -0.010 4.010 6 N -0.227 5.227 7 C 0.154 3.846 8 N -0.333 5.333 9 C 0.031 3.969 10 H 0.128 0.872 11 C -0.178 4.178 12 C -0.144 4.144 13 H 0.122 0.878 14 C 0.016 3.984 15 N -0.168 5.168 16 C -0.044 4.044 17 N -0.274 5.274 18 C -0.105 4.105 19 N -0.147 5.147 20 C -0.187 4.187 21 C -0.045 4.045 22 F -0.112 7.112 23 C -0.064 4.064 24 H 0.227 0.773 25 H 0.133 0.867 26 H -0.176 1.176 27 H -0.178 1.178 28 H 0.180 0.820 29 H 0.250 0.750 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.234 0.766 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.176 3.842 -0.319 5.683 hybrid contribution -0.446 -1.618 0.553 1.767 sum 3.730 2.224 0.234 4.349 Atomic orbital electron populations 1.86515 1.17046 1.81661 1.49329 1.24869 0.85268 1.09941 0.96618 0.94829 0.81021 0.77596 0.87774 1.20952 1.04728 0.95156 1.00525 1.22350 0.91787 0.99066 0.87828 1.67281 1.26242 1.07352 1.21790 1.18381 0.90126 0.89137 0.86969 1.44217 1.54499 1.14292 1.20247 1.21717 0.91407 0.95059 0.88726 0.87166 1.23376 0.97123 1.01381 0.95930 1.23024 0.99239 1.00023 0.92117 0.87821 1.21920 0.84506 1.03680 0.88260 1.50563 1.23448 1.15184 1.27582 1.26104 0.92835 0.97612 0.87834 1.70563 1.15729 1.10743 1.30380 1.26046 0.98811 0.94007 0.91590 1.78024 1.04740 1.08159 1.23737 1.23615 1.01723 0.96624 0.96709 1.18003 1.06799 0.80948 0.98771 1.91498 1.92189 1.33527 1.93980 1.21290 0.96169 0.94283 0.94642 0.77268 0.86690 1.17569 1.17844 0.81996 0.74962 0.87974 0.90239 0.87734 0.89048 0.76586 0.76719 0.91006 0.88793 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.36 12.78 -35.23 -0.45 -0.09 16 2 C -0.06 0.07 2.83 36.01 0.10 0.17 16 3 Si 0.69 -1.54 29.82 -169.99 -5.07 -6.61 16 4 C -0.21 0.11 5.39 -104.47 -0.56 -0.45 16 5 C 0.15 -0.07 9.84 -17.57 -0.17 -0.25 16 6 N -0.51 -0.53 9.15 -12.36 -0.11 -0.64 16 7 C 0.39 0.47 7.49 -154.86 -1.16 -0.69 16 8 N -0.70 0.29 5.42 -53.06 -0.29 0.00 16 9 C 0.14 -0.27 4.32 -67.12 -0.29 -0.56 16 10 H 0.11 -0.14 7.45 -51.93 -0.39 -0.53 16 11 C -0.14 0.53 7.38 -25.92 -0.19 0.33 16 12 C -0.12 0.34 3.77 -89.67 -0.34 0.01 16 13 H 0.10 -0.05 8.01 -51.93 -0.42 -0.46 16 14 C 0.14 -0.45 6.39 -4.04 -0.03 -0.48 16 15 N -0.38 -0.03 3.69 -62.63 -0.23 -0.26 16 16 C 0.25 -0.02 12.63 -90.66 -1.14 -1.16 16 17 N -0.55 -1.60 11.19 -15.83 -0.18 -1.78 16 18 C 0.20 0.47 13.03 -91.81 -1.20 -0.73 16 19 N -0.32 -0.88 12.46 29.29 0.36 -0.52 16 20 C -0.15 0.35 7.45 -25.78 -0.19 0.16 16 21 C -0.02 -0.03 7.35 -39.09 -0.29 -0.32 16 22 F -0.13 -0.32 16.65 2.25 0.04 -0.28 16 23 C -0.04 -0.02 9.76 -39.26 -0.38 -0.40 16 24 H 0.38 -1.67 8.70 45.56 0.40 -1.28 16 25 H 0.12 -0.11 7.96 -51.93 -0.41 -0.53 16 26 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 27 H -0.25 0.04 7.11 56.52 0.40 0.44 16 28 H 0.16 -0.46 4.88 -52.49 -0.26 -0.71 16 29 H 0.41 -0.36 8.18 -40.82 -0.33 -0.70 16 30 H 0.10 -0.54 8.10 -51.93 -0.42 -0.96 16 31 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 32 H 0.10 -0.64 7.79 -51.93 -0.40 -1.04 16 33 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 34 H 0.22 -0.98 8.06 -52.48 -0.42 -1.40 16 35 H 0.22 -0.14 8.06 -52.49 -0.42 -0.56 16 36 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 37 H 0.09 -0.36 7.90 -51.93 -0.41 -0.77 16 38 H 0.15 -0.03 8.06 -52.49 -0.42 -0.45 16 LS Contribution 330.56 15.07 4.98 4.98 Total: 0.00 -9.08 330.56 -11.17 -20.24 By element: Atomic # 1 Polarization: -6.30 SS G_CDS: -4.38 Total: -10.68 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -5.84 Total: -4.37 kcal Atomic # 7 Polarization: -2.75 SS G_CDS: -0.44 Total: -3.20 kcal Atomic # 8 Polarization: 0.36 SS G_CDS: -0.45 Total: -0.09 kcal Atomic # 9 Polarization: -0.32 SS G_CDS: 0.04 Total: -0.28 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: -5.07 Total: -6.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -9.08 -11.17 -20.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687812_17656566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.946 kcal (2) G-P(sol) polarization free energy of solvation -9.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds