Wall clock time and date at job start Mon Mar 8 2021 07:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.37989 * 120.32520 * 119.99784 * 4 2 1 6 6 N 1.32012 * 120.89764 * 179.97438 * 5 4 2 7 7 C 1.32341 * 121.64937 * 359.97438 * 6 5 4 8 8 N 1.39142 * 119.71855 * 179.97438 * 7 6 5 9 9 C 1.46497 * 119.99923 * 359.97438 * 8 7 6 10 10 H 1.09004 * 112.85397 * 25.33576 * 9 8 7 11 11 C 1.53781 * 113.61573 * 156.52987 * 9 8 7 12 12 C 1.53776 * 87.08130 * 89.11556 * 11 9 8 13 13 H 1.08997 * 113.61455 * 270.79903 * 12 11 9 14 14 C 1.52997 * 113.61341 * 139.98606 * 12 11 9 15 15 N 1.46499 * 109.47466 * 174.99825 * 14 12 11 16 16 C 1.34431 * 126.82657 * 124.99271 * 15 14 12 17 17 N 1.30827 * 108.08160 * 179.97438 * 16 15 14 18 18 C 1.33243 * 109.82887 * 0.02562 * 17 16 15 19 19 N 1.30711 * 108.94336 * 359.75168 * 18 17 16 20 20 C 1.53781 * 113.61868 * 254.13421 * 9 8 7 21 21 C 1.39342 * 120.56392 * 359.97438 * 7 6 5 22 22 F 1.35092 * 120.47468 * 180.02562 * 21 7 6 23 23 C 1.38447 * 119.05481 * 359.77077 * 21 7 6 24 24 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 25 25 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 26 26 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 27 27 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 28 28 H 1.07993 * 119.55176 * 359.97438 * 5 4 2 29 29 H 0.96995 * 120.00343 * 179.97438 * 8 7 6 30 30 H 1.09003 * 113.61762 * 203.66661 * 11 9 8 31 31 H 1.09004 * 113.61083 * 334.47738 * 11 9 8 32 32 H 1.09002 * 109.47146 * 295.00101 * 14 12 11 33 33 H 1.09003 * 109.47401 * 54.99686 * 14 12 11 34 34 H 1.08006 * 125.95798 * 0.02562 * 16 15 14 35 35 H 1.07993 * 125.52971 * 179.97438 * 18 17 16 36 36 H 1.09004 * 113.60933 * 25.43690 * 20 9 8 37 37 H 1.08999 * 113.61578 * 156.33074 * 20 9 8 38 38 H 1.07993 * 120.75909 * 180.24813 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7249 -0.0461 -2.1432 6 7 3.1715 -0.6575 -3.2247 7 6 2.8798 -1.9234 -3.4772 8 7 3.3717 -2.5279 -4.6298 9 6 4.2082 -1.7633 -5.5581 10 1 4.7299 -0.9369 -5.0753 11 6 5.1201 -2.6410 -6.4316 12 6 3.9621 -2.7018 -7.4415 13 1 3.2732 -3.5282 -7.2667 14 6 4.4149 -2.6043 -8.8997 15 7 3.2610 -2.7908 -9.7829 16 6 2.8426 -1.9551 -10.7492 17 7 1.7827 -2.4796 -11.3087 18 6 1.4950 -3.6443 -10.7289 19 7 2.3751 -3.8805 -9.7917 20 6 3.4828 -1.3613 -6.8531 21 6 2.0842 -2.6560 -2.5986 22 9 1.7879 -3.9483 -2.8579 23 6 1.6060 -2.0423 -1.4534 24 1 -0.3934 0.4418 -0.7650 25 1 1.7923 -0.5138 0.8899 26 1 1.5616 2.4678 1.2086 27 1 3.5346 1.7703 -0.0322 28 1 2.9843 0.9879 -1.9705 29 1 3.1608 -3.4556 -4.8188 30 1 6.0000 -2.1184 -6.8070 31 1 5.3600 -3.6044 -5.9816 32 1 4.8547 -1.6232 -9.0787 33 1 5.1563 -3.3772 -9.1024 34 1 3.3019 -1.0151 -11.0175 35 1 0.6709 -4.2902 -10.9930 36 1 2.4004 -1.2928 -6.7439 37 1 3.9157 -0.4894 -7.3435 38 1 0.9905 -2.5853 -0.7517 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687812_17656566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:56 Heat of formation + Delta-G solvation = 96.954473 kcal Electronic energy + Delta-G solvation = -24258.888179 eV Core-core repulsion = 20441.972301 eV Total energy + Delta-G solvation = -3816.915878 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.123 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.01979 -42.98354 -41.55276 -40.35771 -37.95313 -35.93989 -34.41480 -33.21113 -32.16801 -31.30224 -28.99970 -26.76894 -26.44514 -25.40506 -24.08350 -23.04214 -22.89354 -22.33910 -20.30841 -19.50733 -18.51798 -18.25969 -18.23231 -17.54041 -17.09639 -16.87633 -16.42763 -16.20721 -16.04233 -15.82843 -15.47292 -15.39598 -15.16868 -14.99327 -14.68724 -14.36717 -14.11337 -13.79485 -13.49675 -13.47766 -13.25794 -12.84445 -12.58549 -12.14116 -12.09011 -11.86109 -11.45136 -11.21711 -10.96446 -10.79445 -10.75496 -10.69711 -10.46210 -10.42892 -8.80980 -4.97137 -0.12941 0.05657 0.70632 1.31277 1.45909 1.65747 1.90577 1.99965 2.00986 2.49492 2.97710 3.21627 3.42456 3.46712 3.48837 3.51827 3.54293 3.64300 3.82125 3.83375 3.93017 3.98492 4.16335 4.20187 4.39841 4.45578 4.50739 4.54938 4.67376 4.73383 4.76982 4.84224 4.94373 4.99578 5.05318 5.19895 5.31214 5.43202 5.45584 5.95945 5.98198 6.11947 6.76844 6.89159 7.13284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.061 4.061 3 Si 0.777 3.223 4 C -0.205 4.205 5 C 0.148 3.852 6 N -0.520 5.520 7 C 0.384 3.616 8 N -0.701 5.701 9 C 0.129 3.871 10 H 0.107 0.893 11 C -0.124 4.124 12 C -0.120 4.120 13 H 0.075 0.925 14 C 0.133 3.867 15 N -0.376 5.376 16 C 0.257 3.743 17 N -0.585 5.585 18 C 0.185 3.815 19 N -0.352 5.352 20 C -0.140 4.140 21 C -0.042 4.042 22 F -0.143 7.143 23 C -0.041 4.041 24 H 0.396 0.604 25 H 0.111 0.889 26 H -0.298 1.298 27 H -0.276 1.276 28 H 0.186 0.814 29 H 0.412 0.588 30 H 0.128 0.872 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.259 0.741 35 H 0.230 0.770 36 H 0.043 0.957 37 H 0.116 0.884 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.417 5.000 -1.329 6.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.172 4.172 3 Si 0.682 3.318 4 C -0.211 4.211 5 C -0.009 4.009 6 N -0.237 5.237 7 C 0.145 3.855 8 N -0.332 5.332 9 C 0.024 3.976 10 H 0.125 0.875 11 C -0.162 4.162 12 C -0.139 4.139 13 H 0.093 0.907 14 C 0.012 3.988 15 N -0.167 5.167 16 C -0.039 4.039 17 N -0.313 5.313 18 C -0.117 4.117 19 N -0.181 5.181 20 C -0.179 4.179 21 C -0.068 4.068 22 F -0.123 7.123 23 C -0.067 4.067 24 H 0.246 0.754 25 H 0.128 0.872 26 H -0.225 1.225 27 H -0.202 1.202 28 H 0.203 0.797 29 H 0.249 0.751 30 H 0.147 0.853 31 H 0.093 0.907 32 H 0.161 0.839 33 H 0.114 0.886 34 H 0.275 0.725 35 H 0.246 0.754 36 H 0.062 0.938 37 H 0.135 0.865 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.512 5.285 -0.863 7.685 hybrid contribution -0.861 -2.040 0.779 2.348 sum 4.651 3.245 -0.083 5.672 Atomic orbital electron populations 1.86479 1.17305 1.82153 1.50531 1.25046 0.85206 1.10901 0.96019 0.93774 0.78091 0.74576 0.85354 1.21015 1.04582 0.94692 1.00781 1.22745 0.90994 0.99938 0.87187 1.67345 1.26730 1.07213 1.22448 1.18538 0.90177 0.89362 0.87379 1.44355 1.54391 1.14388 1.20109 1.21865 0.91738 0.95373 0.88628 0.87457 1.23353 0.97241 1.01029 0.94606 1.22854 0.99198 0.98796 0.93048 0.90704 1.22264 0.83489 1.05999 0.87028 1.50745 1.23595 1.14411 1.27925 1.26893 0.91880 0.98325 0.86824 1.70540 1.17535 1.11402 1.31872 1.26419 0.99324 0.94406 0.91598 1.77943 1.05732 1.09992 1.24398 1.23604 0.99966 0.97632 0.96702 1.18194 1.08073 0.80829 0.99705 1.91461 1.92416 1.34236 1.94143 1.21429 0.96062 0.94876 0.94379 0.75435 0.87197 1.22545 1.20235 0.79728 0.75081 0.85343 0.90739 0.83917 0.88572 0.72503 0.75403 0.93816 0.86529 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.79 12.78 -148.98 -1.90 -1.12 16 2 C -0.06 0.16 2.83 71.24 0.20 0.37 16 3 Si 0.78 -3.87 29.82 68.60 2.05 -1.83 16 4 C -0.21 0.19 5.39 -19.76 -0.11 0.09 16 5 C 0.15 -0.21 9.84 84.61 0.83 0.63 16 6 N -0.52 -1.13 9.15 -193.03 -1.77 -2.90 16 7 C 0.38 1.31 7.49 133.08 1.00 2.30 16 8 N -0.70 -0.19 5.42 -321.79 -1.74 -1.93 16 9 C 0.13 -0.54 4.32 45.52 0.20 -0.34 16 10 H 0.11 -0.35 7.45 -2.38 -0.02 -0.37 16 11 C -0.12 1.06 7.38 31.12 0.23 1.29 16 12 C -0.12 0.69 3.77 -10.18 -0.04 0.65 16 13 H 0.07 0.05 8.01 -2.39 -0.02 0.03 16 14 C 0.13 -1.06 6.39 86.38 0.55 -0.51 16 15 N -0.38 0.09 3.69 -352.06 -1.30 -1.21 16 16 C 0.26 -0.27 12.63 180.36 2.28 2.01 16 17 N -0.59 -3.64 11.19 -204.00 -2.28 -5.93 16 18 C 0.19 1.10 13.03 180.76 2.36 3.46 16 19 N -0.35 -2.34 12.46 -61.25 -0.76 -3.10 16 20 C -0.14 0.72 7.45 31.21 0.23 0.96 16 21 C -0.04 -0.19 7.35 22.59 0.17 -0.02 16 22 F -0.14 -0.97 16.65 44.97 0.75 -0.22 16 23 C -0.04 -0.09 9.76 22.48 0.22 0.13 16 24 H 0.40 -3.66 8.70 -74.05 -0.64 -4.30 16 25 H 0.11 -0.19 7.96 -2.39 -0.02 -0.21 16 26 H -0.30 -0.88 7.11 99.48 0.71 -0.17 16 27 H -0.28 0.32 7.11 99.48 0.71 1.03 16 28 H 0.19 -1.28 4.88 -2.91 -0.01 -1.30 16 29 H 0.41 0.02 8.18 -92.71 -0.76 -0.74 16 30 H 0.13 -1.73 8.10 -2.39 -0.02 -1.75 16 31 H 0.07 -0.51 8.14 -2.38 -0.02 -0.53 16 32 H 0.14 -2.24 7.79 -2.39 -0.02 -2.26 16 33 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 34 H 0.26 -2.99 8.06 -2.91 -0.02 -3.02 16 35 H 0.23 0.10 8.06 -2.91 -0.02 0.08 16 36 H 0.04 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.12 -1.14 7.90 -2.39 -0.02 -1.16 16 38 H 0.15 0.14 8.06 -2.91 -0.02 0.11 16 Total: 0.00 -23.49 330.56 0.91 -22.58 By element: Atomic # 1 Polarization: -15.11 SS G_CDS: -0.24 Total: -15.35 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 8.11 Total: 11.00 kcal Atomic # 7 Polarization: -7.21 SS G_CDS: -7.85 Total: -15.07 kcal Atomic # 8 Polarization: 0.79 SS G_CDS: -1.90 Total: -1.12 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.75 Total: -0.22 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.05 Total: -1.83 kcal Total: -23.49 0.91 -22.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687812_17656566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.538 kcal (2) G-P(sol) polarization free energy of solvation -23.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds