Wall clock time and date at job start Mon Mar 8 2021 07:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86304 * 109.46725 * 2 1 4 4 C 1.50699 * 109.47184 * 119.99892 * 2 1 3 5 5 C 1.38610 * 120.72162 * 244.72377 * 4 2 1 6 6 N 1.32273 * 119.19497 * 179.78512 * 5 4 2 7 7 C 1.32491 * 120.74472 * 0.47519 * 6 5 4 8 8 N 1.38406 * 119.21907 * 179.75189 * 7 6 5 9 9 C 1.46501 * 119.99969 * 0.02562 * 8 7 6 10 10 H 1.08999 * 112.85131 * 334.67034 * 9 8 7 11 11 C 1.53778 * 113.60997 * 105.86530 * 9 8 7 12 12 C 1.54047 * 86.98630 * 89.16234 * 11 9 8 13 13 H 1.09001 * 113.69047 * 270.86947 * 12 11 9 14 14 C 1.53004 * 113.61851 * 139.98025 * 12 11 9 15 15 N 1.46498 * 109.47545 * 87.50479 * 14 12 11 16 16 C 1.36881 * 126.39469 * 269.71360 * 15 14 12 17 17 C 1.34671 * 106.81479 * 179.84123 * 16 15 14 18 18 N 1.34130 * 108.01815 * 0.41968 * 17 16 15 19 19 C 1.30495 * 109.25933 * 359.73092 * 18 17 16 20 20 C 1.53781 * 113.61443 * 203.47211 * 9 8 7 21 21 N 1.32497 * 121.56277 * 359.77717 * 7 6 5 22 22 C 1.32276 * 120.74164 * 359.97390 * 21 7 6 23 23 H 0.96700 * 114.00234 * 299.99899 * 1 2 3 24 24 H 1.09002 * 109.47382 * 239.99890 * 2 1 3 25 25 H 1.48499 * 109.99644 * 178.68105 * 3 2 1 26 26 H 1.48492 * 110.00078 * 299.99611 * 3 2 1 27 27 H 1.08002 * 120.39678 * 359.97438 * 5 4 2 28 28 H 0.96998 * 119.99819 * 180.02562 * 8 7 6 29 29 H 1.09008 * 113.61510 * 203.66489 * 11 9 8 30 30 H 1.09006 * 113.61767 * 334.56406 * 11 9 8 31 31 H 1.09003 * 109.46571 * 207.50472 * 14 12 11 32 32 H 1.09001 * 109.46746 * 327.50118 * 14 12 11 33 33 H 1.08001 * 126.59363 * 359.97438 * 16 15 14 34 34 H 1.08001 * 125.98940 * 180.12306 * 17 16 15 35 35 H 1.08002 * 125.65116 * 179.97438 * 19 18 17 36 36 H 1.08999 * 113.61628 * 25.43429 * 20 9 8 37 37 H 1.09000 * 113.61317 * 156.25439 * 20 9 8 38 38 H 1.08000 * 120.40104 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6471 -0.0262 2.2005 6 7 3.0700 -0.6787 3.2706 7 6 2.8245 -1.9725 3.4160 8 7 3.2862 -2.6250 4.5458 9 6 4.0363 -1.8852 5.5639 10 1 4.5387 -1.0048 5.1631 11 6 3.2282 -1.6049 6.8418 12 6 3.7449 -2.9575 7.3678 13 1 3.1081 -3.8020 7.1044 14 6 4.1195 -2.9358 8.8511 15 7 2.9342 -3.2348 9.6585 16 6 2.0398 -2.3257 10.1558 17 6 1.1085 -3.0252 10.8318 18 7 1.4308 -4.3251 10.7574 19 6 2.5232 -4.4582 10.0561 20 6 4.9470 -2.7751 6.4261 21 7 2.1478 -2.6566 2.5051 22 6 1.6926 -2.0633 1.4140 23 1 -0.3933 0.4417 0.7650 24 1 1.7924 -0.5138 -0.8900 25 1 3.5345 1.7704 0.0321 26 1 1.5615 2.4679 -1.2085 27 1 2.8543 1.0275 2.0854 28 1 3.1133 -3.5721 4.6636 29 1 3.5918 -0.7481 7.4093 30 1 2.1504 -1.5804 6.6805 31 1 4.8880 -3.6847 9.0427 32 1 4.4997 -1.9491 9.1154 33 1 2.0732 -1.2538 10.0284 34 1 0.2547 -2.6116 11.3479 35 1 3.0171 -5.3920 9.8313 36 1 5.2560 -3.6948 5.9293 37 1 5.7805 -2.2380 6.8788 38 1 1.1421 -2.6264 0.6750 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14687814_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:59 Heat of formation + Delta-G solvation = 127.658776 kcal Electronic energy + Delta-G solvation = -21867.686187 eV Core-core repulsion = 18521.555723 eV Total energy + Delta-G solvation = -3346.130464 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.93778 -42.17755 -40.60496 -38.10015 -36.03801 -34.77451 -34.41264 -32.07603 -30.37521 -28.91647 -27.02261 -26.61608 -25.96380 -24.21500 -23.25986 -22.19651 -21.82025 -20.67399 -19.63278 -18.61545 -18.35822 -18.07288 -16.83391 -16.72224 -16.55317 -16.13132 -15.85240 -15.69434 -15.54894 -15.04515 -14.89205 -14.75577 -14.57666 -14.23520 -14.11258 -13.96826 -13.71201 -13.25512 -13.08671 -12.51870 -12.26941 -12.03505 -11.90611 -11.81557 -11.57085 -11.30931 -10.81826 -10.63420 -10.45797 -10.06376 -9.38984 -9.19662 -5.15166 0.00377 0.10488 1.17182 1.18214 1.52332 1.66627 1.81999 1.88940 2.34969 2.75134 3.03085 3.15496 3.24999 3.36288 3.44349 3.56108 3.57551 3.65482 3.70191 3.83276 3.86337 3.97613 4.03731 4.13831 4.24121 4.43702 4.44401 4.45122 4.57547 4.58417 4.67650 4.76468 4.81592 4.85036 4.94596 5.22616 5.35595 5.71956 5.87321 5.93308 6.28022 6.31682 6.47735 7.22393 7.22655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.046 4.046 3 Si 0.680 3.320 4 C -0.293 4.293 5 C 0.200 3.800 6 N -0.560 5.560 7 C 0.570 3.430 8 N -0.679 5.679 9 C 0.139 3.861 10 H 0.111 0.889 11 C -0.146 4.146 12 C -0.129 4.129 13 H 0.097 0.903 14 C 0.114 3.886 15 N -0.457 5.457 16 C -0.054 4.054 17 C -0.031 4.031 18 N -0.495 5.495 19 C 0.179 3.821 20 C -0.138 4.138 21 N -0.569 5.569 22 C 0.224 3.776 23 H 0.379 0.621 24 H 0.116 0.884 25 H -0.255 1.255 26 H -0.250 1.250 27 H 0.167 0.833 28 H 0.415 0.585 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.202 0.798 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 3.559 -0.150 4.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.159 4.159 3 Si 0.582 3.418 4 C -0.301 4.301 5 C 0.032 3.968 6 N -0.282 5.282 7 C 0.213 3.787 8 N -0.314 5.314 9 C 0.032 3.968 10 H 0.129 0.871 11 C -0.185 4.185 12 C -0.149 4.149 13 H 0.115 0.885 14 C -0.009 4.009 15 N -0.140 5.140 16 C -0.186 4.186 17 C -0.179 4.179 18 N -0.213 5.213 19 C -0.104 4.104 20 C -0.177 4.177 21 N -0.290 5.290 22 C 0.056 3.944 23 H 0.227 0.773 24 H 0.133 0.867 25 H -0.180 1.180 26 H -0.175 1.175 27 H 0.184 0.816 28 H 0.252 0.748 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.189 0.811 34 H 0.186 0.814 35 H 0.219 0.781 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.080 2.850 0.133 4.978 hybrid contribution 0.143 0.063 -1.229 1.239 sum 4.223 2.913 -1.096 5.246 Atomic orbital electron populations 1.86516 1.17095 1.81643 1.49275 1.24713 0.85147 1.09653 0.96375 0.95012 0.81048 0.77737 0.88021 1.21733 1.08902 0.97830 1.01631 1.22778 0.88201 0.99199 0.86594 1.67892 1.26985 1.08255 1.25096 1.19327 0.87036 0.85545 0.86756 1.43788 1.58317 1.11762 1.17573 1.21756 0.92412 0.95797 0.86824 0.87128 1.23595 1.01379 0.96639 0.96847 1.23115 0.98900 0.99772 0.93068 0.88468 1.21960 0.85659 1.03767 0.89513 1.45576 1.21408 1.07553 1.39472 1.22729 0.94387 0.96474 1.05055 1.22352 1.01457 0.89446 1.04662 1.70311 1.12820 1.19597 1.18610 1.25018 0.95638 0.89566 1.00145 1.23367 0.96774 1.01067 0.96466 1.67980 1.16514 1.40037 1.04482 1.22852 0.89097 0.90987 0.91513 0.77346 0.86687 1.17976 1.17474 0.81624 0.74753 0.88726 0.90832 0.88567 0.88669 0.81079 0.81436 0.78116 0.90166 0.87884 0.81223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.52 12.85 -35.23 -0.45 0.06 16 2 C -0.05 0.07 2.83 36.01 0.10 0.17 16 3 Si 0.68 -1.57 29.88 -169.99 -5.08 -6.65 16 4 C -0.29 0.16 5.36 -104.35 -0.56 -0.40 16 5 C 0.20 -0.08 9.92 -17.22 -0.17 -0.25 16 6 N -0.56 -0.79 9.15 -13.93 -0.13 -0.91 16 7 C 0.57 1.04 8.43 -322.81 -2.72 -1.68 16 8 N -0.68 0.31 5.41 -55.00 -0.30 0.02 16 9 C 0.14 -0.32 4.30 -67.12 -0.29 -0.61 16 10 H 0.11 -0.15 7.41 -51.93 -0.38 -0.53 16 11 C -0.15 0.41 7.45 -25.78 -0.19 0.22 16 12 C -0.13 0.49 3.86 -89.66 -0.35 0.14 16 13 H 0.10 -0.24 8.14 -51.93 -0.42 -0.66 16 14 C 0.11 -0.43 5.99 -4.04 -0.02 -0.46 16 15 N -0.46 0.23 2.75 -118.57 -0.33 -0.09 16 16 C -0.05 -0.02 11.58 -16.56 -0.19 -0.21 16 17 C -0.03 -0.09 11.87 -17.81 -0.21 -0.30 16 18 N -0.50 -2.26 11.25 -14.66 -0.16 -2.43 16 19 C 0.18 0.24 12.56 -90.38 -1.14 -0.90 16 20 C -0.14 0.61 7.38 -25.92 -0.19 0.42 16 21 N -0.57 -1.36 10.46 -13.93 -0.15 -1.50 16 22 C 0.22 0.16 10.99 -17.22 -0.19 -0.03 16 23 H 0.38 -1.73 8.70 45.56 0.40 -1.33 16 24 H 0.12 -0.16 7.96 -51.93 -0.41 -0.57 16 25 H -0.25 0.00 7.11 56.52 0.40 0.40 16 26 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 27 H 0.17 -0.51 5.07 -52.49 -0.27 -0.78 16 28 H 0.41 -0.49 8.82 -40.82 -0.36 -0.85 16 29 H 0.09 -0.36 7.90 -51.92 -0.41 -0.77 16 30 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 31 H 0.10 -0.48 8.14 -51.93 -0.42 -0.91 16 32 H 0.09 -0.46 7.85 -51.93 -0.41 -0.87 16 33 H 0.17 -0.37 8.06 -52.49 -0.42 -0.80 16 34 H 0.17 0.17 8.06 -52.49 -0.42 -0.25 16 35 H 0.20 -0.36 8.06 -52.49 -0.42 -0.79 16 36 H 0.08 -0.33 8.14 -51.93 -0.42 -0.76 16 37 H 0.10 -0.58 8.10 -51.93 -0.42 -1.00 16 38 H 0.17 -0.16 8.06 -52.49 -0.42 -0.58 16 LS Contribution 325.09 15.07 4.90 4.90 Total: 0.00 -9.21 325.09 -12.66 -21.87 By element: Atomic # 1 Polarization: -6.54 SS G_CDS: -4.85 Total: -11.39 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -6.12 Total: -3.88 kcal Atomic # 7 Polarization: -3.86 SS G_CDS: -1.06 Total: -4.92 kcal Atomic # 8 Polarization: 0.52 SS G_CDS: -0.45 Total: 0.06 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: -5.08 Total: -6.65 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -9.21 -12.66 -21.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687814_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.528 kcal (2) G-P(sol) polarization free energy of solvation -9.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds