Wall clock time and date at job start Mon Mar 8 2021 07:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.38845 * 120.33388 * 299.72674 * 4 2 1 6 6 C 1.38342 * 118.49953 * 179.73569 * 5 4 2 7 7 C 1.39091 * 119.10023 * 0.55975 * 6 5 4 8 8 N 1.39010 * 119.70552 * 179.67755 * 7 6 5 9 9 C 1.46497 * 119.99831 * 0.02628 * 8 7 6 10 10 H 1.08994 * 112.85620 * 25.32582 * 9 8 7 11 11 C 1.53781 * 113.61587 * 156.52783 * 9 8 7 12 12 C 1.53780 * 87.08282 * 89.11203 * 11 9 8 13 13 H 1.09001 * 113.61470 * 270.88326 * 12 11 9 14 14 C 1.53006 * 113.61586 * 140.06592 * 12 11 9 15 15 N 1.46494 * 109.47055 * 175.00079 * 14 12 11 16 16 C 1.36882 * 126.39772 * 269.71229 * 15 14 12 17 17 C 1.34675 * 106.82040 * 179.84586 * 16 15 14 18 18 N 1.34129 * 108.01737 * 0.42245 * 17 16 15 19 19 C 1.30506 * 109.25642 * 359.73019 * 18 17 16 20 20 C 1.53787 * 113.61212 * 254.12991 * 9 8 7 21 21 N 1.32422 * 120.59042 * 359.70403 * 7 6 5 22 22 C 1.31940 * 121.62262 * 359.97438 * 21 7 6 23 23 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 24 24 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 25 25 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 26 26 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 27 27 H 1.07993 * 120.74971 * 0.02562 * 5 4 2 28 28 H 1.07997 * 120.44759 * 180.25663 * 6 5 4 29 29 H 0.96999 * 119.99781 * 180.02562 * 8 7 6 30 30 H 1.08996 * 113.61614 * 203.66330 * 11 9 8 31 31 H 1.08996 * 113.61336 * 334.48322 * 11 9 8 32 32 H 1.08997 * 109.47059 * 295.00116 * 14 12 11 33 33 H 1.08999 * 109.46523 * 55.00182 * 14 12 11 34 34 H 1.08004 * 126.59117 * 359.97438 * 16 15 14 35 35 H 1.07994 * 125.99098 * 180.12222 * 17 16 15 36 36 H 1.08001 * 125.64991 * 180.02562 * 19 18 17 37 37 H 1.09008 * 113.61185 * 25.43706 * 20 9 8 38 38 H 1.09002 * 113.61468 * 156.33025 * 20 9 8 39 39 H 1.08000 * 119.57420 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6049 -2.0413 -1.4541 6 6 2.0819 -2.6546 -2.5987 7 6 2.8776 -1.9250 -3.4757 8 7 3.3692 -2.5308 -4.6262 9 6 3.0482 -3.9315 -4.9108 10 1 2.1192 -4.2565 -4.4424 11 6 3.1465 -4.2954 -6.4017 12 6 4.6244 -4.6314 -6.1415 13 1 5.2942 -3.7805 -6.2662 14 6 5.1080 -5.8813 -6.8797 15 7 6.5474 -6.0489 -6.6650 16 6 7.5499 -5.5384 -7.4448 17 6 8.7130 -5.9279 -6.8887 18 7 8.4283 -6.6642 -5.8044 19 6 7.1331 -6.7410 -5.6641 20 6 4.2253 -4.8931 -4.6768 21 7 3.1714 -0.6585 -3.2241 22 6 2.7252 -0.0462 -2.1439 23 1 -0.3934 0.4418 0.7650 24 1 1.7923 -0.5138 0.8901 25 1 1.5616 2.4678 -1.2086 26 1 1.5878 2.4586 1.2241 27 1 0.9885 -2.5840 -0.7528 28 1 1.8437 -3.6874 -2.8060 29 1 3.9248 -2.0260 -5.2405 30 1 2.5447 -5.1602 -6.6807 31 1 3.0015 -3.4458 -7.0690 32 1 4.5796 -6.7553 -6.4990 33 1 4.9099 -5.7728 -7.9460 34 1 7.4310 -4.9368 -8.3338 35 1 9.7015 -5.6930 -7.2547 36 1 6.6154 -7.2701 -4.8776 37 1 4.9521 -4.5254 -3.9523 38 1 3.9179 -5.9211 -4.4849 39 1 2.9850 0.9879 -1.9717 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14687814_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:43:02 Heat of formation + Delta-G solvation = 112.869024 kcal Electronic energy + Delta-G solvation = -21679.635425 eV Core-core repulsion = 18398.289541 eV Total energy + Delta-G solvation = -3281.345884 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.94208 -41.56208 -40.43363 -37.97135 -35.96912 -34.40529 -33.35935 -31.33337 -30.33499 -28.91487 -27.02762 -26.32046 -25.05526 -24.03601 -22.55691 -22.18999 -21.80377 -20.49405 -19.04729 -18.53423 -18.32868 -17.90628 -16.78506 -16.72783 -16.47329 -15.78370 -15.64764 -15.37281 -15.30614 -15.04843 -14.79346 -14.68538 -14.28147 -14.08096 -13.92664 -13.88562 -13.84117 -13.63459 -13.10304 -12.53184 -12.41256 -12.03913 -11.88061 -11.59076 -11.17152 -10.81741 -10.73876 -10.58130 -10.46106 -10.29741 -9.39559 -8.73416 -4.97395 0.24906 0.43779 1.16408 1.28152 1.58242 1.80967 1.93855 1.95708 2.34791 2.78831 3.09505 3.21707 3.35658 3.42824 3.48518 3.59594 3.79225 3.82629 3.85746 3.91258 3.99024 4.02676 4.09952 4.16291 4.30310 4.36320 4.39456 4.44274 4.53782 4.58828 4.71879 4.75295 4.78401 4.84628 4.95541 5.03460 5.31354 5.34537 5.51599 5.86631 5.97292 6.27619 6.42413 6.48190 7.14910 7.22357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.060 4.060 3 Si 0.675 3.325 4 C -0.186 4.186 5 C -0.005 4.005 6 C -0.237 4.237 7 C 0.408 3.592 8 N -0.706 5.706 9 C 0.132 3.868 10 H 0.100 0.900 11 C -0.137 4.137 12 C -0.127 4.127 13 H 0.098 0.902 14 C 0.114 3.886 15 N -0.457 5.457 16 C -0.058 4.058 17 C -0.029 4.029 18 N -0.496 5.496 19 C 0.183 3.817 20 C -0.153 4.153 21 N -0.538 5.538 22 C 0.159 3.841 23 H 0.379 0.621 24 H 0.075 0.925 25 H -0.253 1.253 26 H -0.259 1.259 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.406 0.594 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.172 0.828 35 H 0.169 0.831 36 H 0.201 0.799 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.578 -1.165 -0.271 2.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.171 4.171 3 Si 0.576 3.424 4 C -0.191 4.191 5 C -0.031 4.031 6 C -0.262 4.262 7 C 0.173 3.827 8 N -0.338 5.338 9 C 0.025 3.975 10 H 0.118 0.882 11 C -0.176 4.176 12 C -0.146 4.146 13 H 0.116 0.884 14 C -0.009 4.009 15 N -0.140 5.140 16 C -0.191 4.191 17 C -0.177 4.177 18 N -0.214 5.214 19 C -0.100 4.100 20 C -0.192 4.192 21 N -0.254 5.254 22 C 0.001 3.999 23 H 0.227 0.773 24 H 0.093 0.907 25 H -0.177 1.177 26 H -0.184 1.184 27 H 0.153 0.847 28 H 0.152 0.848 29 H 0.242 0.758 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.190 0.810 35 H 0.186 0.814 36 H 0.218 0.782 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.801 -0.723 -0.952 2.162 hybrid contribution -2.007 0.000 0.290 2.027 sum -3.807 -0.723 -0.662 3.932 Atomic orbital electron populations 1.86586 1.18071 1.80092 1.49794 1.24520 0.84181 1.10571 0.97813 0.95213 0.91738 0.74842 0.80609 1.19932 1.04705 0.95602 0.98894 1.21176 0.93546 0.93304 0.95033 1.21463 1.05416 1.01980 0.97327 1.18329 0.89206 0.88465 0.86690 1.44106 1.56012 1.10822 1.22836 1.21770 0.98374 0.80806 0.96558 0.88178 1.23339 0.95314 1.02757 0.96151 1.23065 0.96994 0.97969 0.96588 0.88395 1.21957 0.77617 0.99026 1.02308 1.45570 1.07059 1.39362 1.22044 1.22754 0.88129 1.07232 1.00994 1.22354 0.98311 1.01827 0.95234 1.70321 1.12782 1.19447 1.18855 1.24988 0.89484 1.00533 0.94954 1.23689 0.98829 1.00332 0.96314 1.67142 1.27427 1.09055 1.21791 1.22147 0.91745 0.98510 0.87462 0.77289 0.90712 1.17745 1.18428 0.84712 0.84774 0.75769 0.87984 0.90088 0.88512 0.88777 0.81030 0.81404 0.78202 0.90430 0.88697 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.55 12.76 -35.23 -0.45 -1.00 16 2 C -0.06 0.01 2.82 36.01 0.10 0.11 16 3 Si 0.67 -0.54 29.82 -169.99 -5.07 -5.61 16 4 C -0.19 -0.29 5.43 -104.46 -0.57 -0.85 16 5 C 0.00 -0.01 9.77 -39.32 -0.38 -0.39 16 6 C -0.24 -0.17 9.28 -39.23 -0.36 -0.54 16 7 C 0.41 0.70 7.65 -155.01 -1.19 -0.49 16 8 N -0.71 0.51 5.44 -53.15 -0.29 0.22 16 9 C 0.13 -0.42 4.07 -67.12 -0.27 -0.69 16 10 H 0.10 -0.36 6.17 -51.93 -0.32 -0.68 16 11 C -0.14 0.64 7.38 -25.92 -0.19 0.45 16 12 C -0.13 0.50 3.85 -89.67 -0.35 0.16 16 13 H 0.10 -0.23 8.14 -51.93 -0.42 -0.65 16 14 C 0.11 -0.45 5.99 -4.04 -0.02 -0.47 16 15 N -0.46 0.26 2.75 -118.57 -0.33 -0.06 16 16 C -0.06 -0.02 11.58 -16.56 -0.19 -0.22 16 17 C -0.03 -0.08 11.87 -17.81 -0.21 -0.29 16 18 N -0.50 -2.22 11.25 -14.66 -0.16 -2.39 16 19 C 0.18 0.22 12.56 -90.37 -1.14 -0.91 16 20 C -0.15 0.54 7.45 -25.78 -0.19 0.35 16 21 N -0.54 -1.71 10.39 -12.44 -0.13 -1.84 16 22 C 0.16 0.32 9.84 -17.57 -0.17 0.15 16 23 H 0.38 -1.11 8.74 45.56 0.40 -0.71 16 24 H 0.07 -0.13 7.96 -51.92 -0.41 -0.55 16 25 H -0.25 -0.61 7.11 56.52 0.40 -0.21 16 26 H -0.26 -0.28 7.11 56.52 0.40 0.12 16 27 H 0.14 -0.03 8.06 -52.49 -0.42 -0.46 16 28 H 0.13 -0.19 6.06 -52.49 -0.32 -0.51 16 29 H 0.41 -0.35 8.83 -40.82 -0.36 -0.71 16 30 H 0.10 -0.61 8.10 -51.93 -0.42 -1.03 16 31 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 32 H 0.10 -0.52 7.85 -51.93 -0.41 -0.93 16 33 H 0.09 -0.45 8.14 -51.93 -0.42 -0.87 16 34 H 0.17 -0.38 8.06 -52.48 -0.42 -0.81 16 35 H 0.17 0.16 8.06 -52.49 -0.42 -0.26 16 36 H 0.20 -0.37 8.06 -52.49 -0.42 -0.80 16 37 H 0.08 -0.10 8.14 -51.92 -0.42 -0.53 16 38 H 0.09 -0.47 7.91 -51.93 -0.41 -0.88 16 39 H 0.16 0.01 4.88 -52.49 -0.26 -0.25 16 LS Contribution 327.48 15.07 4.94 4.94 Total: 0.00 -9.12 327.48 -11.72 -20.84 By element: Atomic # 1 Polarization: -6.38 SS G_CDS: -5.09 Total: -11.47 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -5.14 Total: -3.63 kcal Atomic # 7 Polarization: -3.15 SS G_CDS: -0.91 Total: -4.06 kcal Atomic # 8 Polarization: -0.55 SS G_CDS: -0.45 Total: -1.00 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: -5.07 Total: -5.61 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -9.12 -11.72 -20.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687814_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.705 kcal (2) G-P(sol) polarization free energy of solvation -9.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds