Wall clock time and date at job start Mon Mar 8 2021 07:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.38845 * 120.33388 * 299.72674 * 4 2 1 6 6 C 1.38342 * 118.49953 * 179.73569 * 5 4 2 7 7 C 1.39091 * 119.10023 * 0.55975 * 6 5 4 8 8 N 1.39010 * 119.70552 * 179.67755 * 7 6 5 9 9 C 1.46497 * 119.99831 * 0.02628 * 8 7 6 10 10 H 1.08994 * 112.85620 * 25.32582 * 9 8 7 11 11 C 1.53781 * 113.61587 * 156.52783 * 9 8 7 12 12 C 1.53780 * 87.08282 * 89.11203 * 11 9 8 13 13 H 1.09001 * 113.61470 * 270.88326 * 12 11 9 14 14 C 1.53006 * 113.61586 * 140.06592 * 12 11 9 15 15 N 1.46494 * 109.47055 * 175.00079 * 14 12 11 16 16 C 1.36882 * 126.39772 * 269.71229 * 15 14 12 17 17 C 1.34675 * 106.82040 * 179.84586 * 16 15 14 18 18 N 1.34129 * 108.01737 * 0.42245 * 17 16 15 19 19 C 1.30506 * 109.25642 * 359.73019 * 18 17 16 20 20 C 1.53787 * 113.61212 * 254.12991 * 9 8 7 21 21 N 1.32422 * 120.59042 * 359.70403 * 7 6 5 22 22 C 1.31940 * 121.62262 * 359.97438 * 21 7 6 23 23 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 24 24 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 25 25 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 26 26 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 27 27 H 1.07993 * 120.74971 * 0.02562 * 5 4 2 28 28 H 1.07997 * 120.44759 * 180.25663 * 6 5 4 29 29 H 0.96999 * 119.99781 * 180.02562 * 8 7 6 30 30 H 1.08996 * 113.61614 * 203.66330 * 11 9 8 31 31 H 1.08996 * 113.61336 * 334.48322 * 11 9 8 32 32 H 1.08997 * 109.47059 * 295.00116 * 14 12 11 33 33 H 1.08999 * 109.46523 * 55.00182 * 14 12 11 34 34 H 1.08004 * 126.59117 * 359.97438 * 16 15 14 35 35 H 1.07994 * 125.99098 * 180.12222 * 17 16 15 36 36 H 1.08001 * 125.64991 * 180.02562 * 19 18 17 37 37 H 1.09008 * 113.61185 * 25.43706 * 20 9 8 38 38 H 1.09002 * 113.61468 * 156.33025 * 20 9 8 39 39 H 1.08000 * 119.57420 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6049 -2.0413 -1.4541 6 6 2.0819 -2.6546 -2.5987 7 6 2.8776 -1.9250 -3.4757 8 7 3.3692 -2.5308 -4.6262 9 6 3.0482 -3.9315 -4.9108 10 1 2.1192 -4.2565 -4.4424 11 6 3.1465 -4.2954 -6.4017 12 6 4.6244 -4.6314 -6.1415 13 1 5.2942 -3.7805 -6.2662 14 6 5.1080 -5.8813 -6.8797 15 7 6.5474 -6.0489 -6.6650 16 6 7.5499 -5.5384 -7.4448 17 6 8.7130 -5.9279 -6.8887 18 7 8.4283 -6.6642 -5.8044 19 6 7.1331 -6.7410 -5.6641 20 6 4.2253 -4.8931 -4.6768 21 7 3.1714 -0.6585 -3.2241 22 6 2.7252 -0.0462 -2.1439 23 1 -0.3934 0.4418 0.7650 24 1 1.7923 -0.5138 0.8901 25 1 1.5616 2.4678 -1.2086 26 1 1.5878 2.4586 1.2241 27 1 0.9885 -2.5840 -0.7528 28 1 1.8437 -3.6874 -2.8060 29 1 3.9248 -2.0260 -5.2405 30 1 2.5447 -5.1602 -6.6807 31 1 3.0015 -3.4458 -7.0690 32 1 4.5796 -6.7553 -6.4990 33 1 4.9099 -5.7728 -7.9460 34 1 7.4310 -4.9368 -8.3338 35 1 9.7015 -5.6930 -7.2547 36 1 6.6154 -7.2701 -4.8776 37 1 4.9521 -4.5254 -3.9523 38 1 3.9179 -5.9211 -4.4849 39 1 2.9850 0.9879 -1.9717 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687814_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:43:01 Heat of formation + Delta-G solvation = 114.831710 kcal Electronic energy + Delta-G solvation = -21679.550317 eV Core-core repulsion = 18398.289541 eV Total energy + Delta-G solvation = -3281.260776 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.93514 -41.53200 -40.25723 -37.96917 -35.89395 -34.36183 -33.40405 -31.31778 -30.36437 -28.76005 -26.71675 -26.28868 -25.01640 -23.93491 -22.54145 -22.23282 -21.75121 -20.26570 -18.99349 -18.51978 -18.24707 -17.88421 -16.67447 -16.61161 -16.36315 -15.70956 -15.60970 -15.32899 -15.27258 -15.01926 -14.76601 -14.63533 -14.21519 -14.07593 -13.95631 -13.89285 -13.64246 -13.35997 -12.83145 -12.43820 -12.28630 -12.06698 -11.73771 -11.32956 -11.09449 -10.89905 -10.78261 -10.61849 -10.43440 -10.30660 -9.44063 -8.70791 -4.93438 0.19635 0.38590 1.16683 1.31053 1.58018 1.94151 1.94559 2.05214 2.24077 2.75918 3.40255 3.42452 3.51967 3.57287 3.71265 3.78994 3.83367 3.89539 3.98343 4.08564 4.09253 4.13537 4.28674 4.35544 4.41193 4.53485 4.60954 4.69159 4.75010 4.78732 4.80050 4.84655 4.99399 5.04527 5.06069 5.21062 5.32532 5.37124 5.55227 5.83354 6.05194 6.33825 6.49156 6.61838 7.11604 7.17373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.064 4.064 3 Si 0.748 3.252 4 C -0.198 4.198 5 C -0.014 4.014 6 C -0.239 4.239 7 C 0.394 3.606 8 N -0.704 5.704 9 C 0.123 3.877 10 H 0.109 0.891 11 C -0.122 4.122 12 C -0.120 4.120 13 H 0.078 0.922 14 C 0.111 3.889 15 N -0.452 5.452 16 C -0.051 4.051 17 C -0.067 4.067 18 N -0.547 5.547 19 C 0.177 3.823 20 C -0.147 4.147 21 N -0.567 5.567 22 C 0.143 3.857 23 H 0.395 0.605 24 H 0.097 0.903 25 H -0.301 1.301 26 H -0.281 1.281 27 H 0.148 0.852 28 H 0.156 0.844 29 H 0.404 0.596 30 H 0.125 0.875 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.197 0.803 35 H 0.171 0.829 36 H 0.226 0.774 37 H 0.052 0.948 38 H 0.116 0.884 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.886 -2.311 -0.471 4.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.174 4.174 3 Si 0.654 3.346 4 C -0.203 4.203 5 C -0.040 4.040 6 C -0.263 4.263 7 C 0.158 3.842 8 N -0.335 5.335 9 C 0.017 3.983 10 H 0.126 0.874 11 C -0.161 4.161 12 C -0.140 4.140 13 H 0.097 0.903 14 C -0.010 4.010 15 N -0.134 5.134 16 C -0.185 4.185 17 C -0.213 4.213 18 N -0.267 5.267 19 C -0.106 4.106 20 C -0.186 4.186 21 N -0.284 5.284 22 C -0.014 4.014 23 H 0.245 0.755 24 H 0.115 0.885 25 H -0.229 1.229 26 H -0.208 1.208 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.240 0.760 30 H 0.143 0.857 31 H 0.095 0.905 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.214 0.786 35 H 0.188 0.812 36 H 0.242 0.758 37 H 0.070 0.930 38 H 0.134 0.866 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.117 -1.888 -1.145 3.820 hybrid contribution -1.640 0.382 0.319 1.714 sum -4.757 -1.506 -0.826 5.058 Atomic orbital electron populations 1.86537 1.18659 1.80552 1.51123 1.24633 0.83819 1.10934 0.98015 0.94348 0.90685 0.72967 0.76639 1.20139 1.04742 0.96087 0.99381 1.21435 0.93680 0.93352 0.95499 1.21701 1.04812 1.02867 0.96909 1.18635 0.89588 0.88351 0.87599 1.44273 1.55508 1.11741 1.22016 1.21996 0.98811 0.79530 0.97986 0.87366 1.23311 0.94686 1.03354 0.94743 1.22931 0.97239 0.97371 0.96428 0.90345 1.22242 0.75632 0.99761 1.03382 1.45757 1.08276 1.38247 1.21109 1.23121 0.87732 1.06363 1.01279 1.22617 0.99566 1.03235 0.95925 1.70241 1.14915 1.21215 1.20281 1.25440 0.88993 1.00461 0.95665 1.23690 0.97932 1.01187 0.95822 1.67131 1.28561 1.10142 1.22604 1.22369 0.92282 0.99076 0.87660 0.75489 0.88540 1.22908 1.20798 0.83399 0.82678 0.76037 0.85672 0.90532 0.86276 0.87340 0.78583 0.81215 0.75803 0.92959 0.86579 0.81956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.04 12.76 -148.98 -1.90 -2.94 16 2 C -0.06 0.02 2.82 71.24 0.20 0.22 16 3 Si 0.75 -0.72 29.82 68.60 2.05 1.33 16 4 C -0.20 -0.69 5.43 -19.76 -0.11 -0.80 16 5 C -0.01 -0.03 9.77 22.44 0.22 0.19 16 6 C -0.24 -0.30 9.28 22.50 0.21 -0.09 16 7 C 0.39 1.59 7.65 133.04 1.02 2.61 16 8 N -0.70 0.79 5.44 -322.06 -1.75 -0.96 16 9 C 0.12 -0.91 4.07 45.52 0.19 -0.72 16 10 H 0.11 -0.96 6.17 -2.39 -0.01 -0.98 16 11 C -0.12 1.37 7.38 31.12 0.23 1.60 16 12 C -0.12 1.10 3.85 -10.18 -0.04 1.06 16 13 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 14 C 0.11 -1.10 5.99 86.38 0.52 -0.59 16 15 N -0.45 0.87 2.75 -529.06 -1.46 -0.59 16 16 C -0.05 -0.04 11.58 83.09 0.96 0.92 16 17 C -0.07 -0.45 11.87 83.52 0.99 0.54 16 18 N -0.55 -5.61 11.25 -200.30 -2.25 -7.86 16 19 C 0.18 0.43 12.56 180.26 2.26 2.70 16 20 C -0.15 1.21 7.45 31.21 0.23 1.44 16 21 N -0.57 -4.36 10.39 -193.27 -2.01 -6.37 16 22 C 0.14 0.76 9.84 84.63 0.83 1.59 16 23 H 0.39 -2.44 8.74 -74.06 -0.65 -3.09 16 24 H 0.10 -0.45 7.96 -2.38 -0.02 -0.47 16 25 H -0.30 -2.10 7.11 99.48 0.71 -1.39 16 26 H -0.28 -0.72 7.11 99.48 0.71 -0.01 16 27 H 0.15 -0.18 8.06 -2.91 -0.02 -0.21 16 28 H 0.16 -0.63 6.06 -2.91 -0.02 -0.65 16 29 H 0.40 -0.33 8.83 -92.71 -0.82 -1.14 16 30 H 0.13 -1.92 8.10 -2.39 -0.02 -1.94 16 31 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.12 -1.66 7.85 -2.39 -0.02 -1.68 16 33 H 0.11 -1.32 8.14 -2.39 -0.02 -1.34 16 34 H 0.20 -1.05 8.06 -2.91 -0.02 -1.07 16 35 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 36 H 0.23 -1.01 8.06 -2.91 -0.02 -1.03 16 37 H 0.05 -0.12 8.14 -2.38 -0.02 -0.14 16 38 H 0.12 -1.43 7.91 -2.39 -0.02 -1.45 16 39 H 0.16 0.27 4.88 -2.91 -0.01 0.26 16 Total: 0.00 -23.56 327.48 0.05 -23.52 By element: Atomic # 1 Polarization: -16.46 SS G_CDS: -0.35 Total: -16.80 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 7.72 Total: 10.67 kcal Atomic # 7 Polarization: -8.30 SS G_CDS: -7.47 Total: -15.77 kcal Atomic # 8 Polarization: -1.04 SS G_CDS: -1.90 Total: -2.94 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: 2.05 Total: 1.33 kcal Total: -23.56 0.05 -23.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687814_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.349 kcal (2) G-P(sol) polarization free energy of solvation -23.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds