Wall clock time and date at job start Mon Mar 8 2021 07:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86309 * 109.47010 * 2 1 4 4 C 1.50703 * 109.47116 * 119.99621 * 2 1 3 5 5 C 1.33323 * 125.94829 * 65.00034 * 4 2 1 6 6 N 1.32124 * 114.58053 * 180.02562 * 5 4 2 7 7 C 1.29683 * 116.86353 * 0.02562 * 6 5 4 8 8 N 1.38609 * 124.94818 * 179.97438 * 7 6 5 9 9 C 1.46493 * 120.00218 * 0.02562 * 8 7 6 10 10 H 1.09002 * 112.84871 * 23.80355 * 9 8 7 11 11 C 1.53777 * 113.61754 * 154.99943 * 9 8 7 12 12 C 1.53777 * 87.08249 * 89.11867 * 11 9 8 13 13 H 1.09001 * 113.61229 * 270.88513 * 12 11 9 14 14 C 1.53002 * 113.61958 * 140.06518 * 12 11 9 15 15 N 1.46496 * 109.47208 * 174.99573 * 14 12 11 16 16 C 1.36888 * 126.39558 * 90.00459 * 15 14 12 17 17 C 1.34666 * 106.81718 * 179.97438 * 16 15 14 18 18 N 1.34122 * 108.02059 * 0.02562 * 17 16 15 19 19 C 1.30499 * 109.25928 * 359.71863 * 18 17 16 20 20 C 1.53777 * 87.08206 * 25.43400 * 12 11 9 21 21 S 1.70968 * 110.10323 * 0.02562 * 7 6 5 22 22 H 0.96702 * 113.99674 * 300.00217 * 1 2 3 23 23 H 1.08994 * 109.47437 * 240.00293 * 2 1 3 24 24 H 1.48495 * 109.99763 * 178.68092 * 3 2 1 25 25 H 1.48504 * 109.99793 * 300.00085 * 3 2 1 26 26 H 1.08002 * 122.71551 * 0.04681 * 5 4 2 27 27 H 0.96999 * 120.00070 * 179.97438 * 8 7 6 28 28 H 1.09007 * 113.61596 * 203.66427 * 11 9 8 29 29 H 1.09000 * 113.61630 * 334.48320 * 11 9 8 30 30 H 1.08998 * 109.47073 * 295.00298 * 14 12 11 31 31 H 1.09007 * 109.46888 * 54.99974 * 14 12 11 32 32 H 1.08005 * 126.58738 * 359.96010 * 16 15 14 33 33 H 1.08002 * 125.98384 * 179.97438 * 17 16 15 34 34 H 1.07998 * 125.65257 * 180.29159 * 19 18 17 35 35 H 1.09008 * 113.61469 * 220.02509 * 20 12 11 36 36 H 1.09003 * 113.61848 * 89.11959 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.7622 -2.0024 1.5122 6 7 2.2973 -2.3901 2.6564 7 6 2.9099 -1.4843 3.3535 8 7 3.5285 -1.7053 4.5741 9 6 3.5204 -3.0446 5.1676 10 1 3.3882 -3.8344 4.4281 11 6 4.6882 -3.2964 6.1358 12 6 3.7833 -2.7403 7.2477 13 1 3.8612 -1.6605 7.3749 14 6 3.8958 -3.5037 8.5689 15 7 3.0922 -2.8302 9.5920 16 6 1.7755 -3.0704 9.8790 17 6 1.4365 -2.2362 10.8803 18 7 2.5165 -1.5061 11.1958 19 6 3.5136 -1.8604 10.4320 20 6 2.5877 -3.1741 6.3834 21 16 2.8422 0.0224 2.5484 22 1 -0.3933 0.4417 0.7651 23 1 1.7924 -0.5137 -0.8899 24 1 3.5346 1.7703 0.0321 25 1 1.5615 2.4680 -1.2085 26 1 1.2311 -2.6779 0.8580 27 1 3.9674 -0.9732 5.0350 28 1 4.9334 -4.3514 6.2592 29 1 5.5637 -2.6793 5.9339 30 1 3.5312 -4.5218 8.4324 31 1 4.9386 -3.5305 8.8854 32 1 1.1321 -3.7905 9.3951 33 1 0.4649 -2.1666 11.3469 34 1 4.5100 -1.4451 10.4647 35 1 1.7667 -2.4569 6.3822 36 1 2.2585 -4.1955 6.5745 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14687814_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:43:04 Heat of formation + Delta-G solvation = 117.768411 kcal Electronic energy + Delta-G solvation = -20299.352550 eV Core-core repulsion = 17107.371366 eV Total energy + Delta-G solvation = -3191.981185 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.95792 -41.17044 -40.21862 -37.89589 -35.91906 -34.26151 -31.26759 -30.39679 -28.99388 -27.04374 -26.57985 -25.09481 -24.02265 -22.23500 -21.90413 -21.52713 -20.22307 -19.66987 -18.46350 -18.10941 -17.20195 -16.81942 -16.62678 -16.33069 -15.91515 -15.67221 -15.53340 -15.07106 -14.94645 -14.88509 -14.70333 -14.26041 -14.06251 -13.93330 -13.73119 -13.13112 -12.92964 -12.54918 -12.36400 -12.06022 -12.02251 -11.60946 -11.22047 -10.83844 -10.82891 -10.47880 -10.28595 -10.20650 -9.40973 -8.83002 -5.16807 -0.08651 -0.03235 0.64066 1.15074 1.22804 1.55916 1.79492 1.88407 1.97608 1.99163 2.32913 3.09721 3.19818 3.38576 3.42902 3.51896 3.62683 3.80786 3.84023 3.89476 3.95652 4.01431 4.22024 4.41430 4.42072 4.44606 4.53683 4.56733 4.69342 4.73114 4.79394 4.82731 4.86885 5.14735 5.33449 5.76452 5.85308 5.94384 6.25943 6.49823 6.94108 7.20511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.011 4.011 3 Si 0.657 3.343 4 C -0.305 4.305 5 C 0.119 3.881 6 N -0.548 5.548 7 C 0.327 3.673 8 N -0.676 5.676 9 C 0.139 3.861 10 H 0.109 0.891 11 C -0.138 4.138 12 C -0.129 4.129 13 H 0.097 0.903 14 C 0.114 3.886 15 N -0.457 5.457 16 C -0.053 4.053 17 C -0.031 4.031 18 N -0.495 5.495 19 C 0.178 3.822 20 C -0.146 4.146 21 S 0.090 5.910 22 H 0.380 0.620 23 H 0.122 0.878 24 H -0.242 1.242 25 H -0.235 1.235 26 H 0.176 0.824 27 H 0.414 0.586 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.172 0.828 33 H 0.169 0.831 34 H 0.202 0.798 35 H 0.074 0.926 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -0.767 0.026 2.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.125 4.125 3 Si 0.557 3.443 4 C -0.428 4.428 5 C -0.032 4.032 6 N -0.273 5.273 7 C -0.044 4.044 8 N -0.315 5.315 9 C 0.031 3.969 10 H 0.127 0.873 11 C -0.177 4.177 12 C -0.148 4.148 13 H 0.115 0.885 14 C -0.009 4.009 15 N -0.140 5.140 16 C -0.186 4.186 17 C -0.179 4.179 18 N -0.213 5.213 19 C -0.104 4.104 20 C -0.185 4.185 21 S 0.339 5.661 22 H 0.227 0.773 23 H 0.139 0.861 24 H -0.166 1.166 25 H -0.158 1.158 26 H 0.193 0.807 27 H 0.252 0.748 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.189 0.811 33 H 0.186 0.814 34 H 0.219 0.781 35 H 0.093 0.907 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.389 0.358 0.021 3.408 hybrid contribution -0.227 -1.551 -1.016 1.868 sum 3.163 -1.193 -0.994 3.524 Atomic orbital electron populations 1.86519 1.16894 1.81679 1.49127 1.24121 0.84849 1.08913 0.94603 0.94984 0.81983 0.77923 0.89439 1.25599 1.14931 0.98297 1.03932 1.21333 0.96630 0.93176 0.92100 1.66470 1.18570 1.33613 1.08671 1.23691 0.95499 0.93323 0.91847 1.43660 1.59211 1.11331 1.17308 1.21805 0.96046 0.84554 0.94540 0.87327 1.23380 0.97182 1.02959 0.94173 1.23063 0.98216 1.00738 0.92816 0.88511 1.21956 0.96228 0.96542 0.86185 1.45576 1.10144 1.30274 1.28033 1.22738 0.85830 1.06375 1.03678 1.22350 0.98758 0.97465 0.99306 1.70311 0.99620 1.26044 1.25342 1.25016 1.00691 0.92922 0.91779 1.23554 0.97097 1.02634 0.95227 1.83978 1.55653 1.11208 1.15243 0.77267 0.86056 1.16575 1.15848 0.80680 0.74839 0.87927 0.90166 0.88685 0.88545 0.81086 0.81420 0.78116 0.90714 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.05 12.88 -35.23 -0.45 -0.51 16 2 C -0.01 0.00 2.99 36.01 0.11 0.11 16 3 Si 0.66 -0.53 31.07 -169.99 -5.28 -5.82 16 4 C -0.30 -0.13 5.73 -36.02 -0.21 -0.34 16 5 C 0.12 0.18 11.24 -19.14 -0.22 -0.03 16 6 N -0.55 -1.28 9.83 -15.21 -0.15 -1.43 16 7 C 0.33 0.20 8.09 -87.68 -0.71 -0.51 16 8 N -0.68 1.20 5.42 -55.00 -0.30 0.91 16 9 C 0.14 -0.35 4.44 -67.12 -0.30 -0.65 16 10 H 0.11 -0.09 7.66 -51.93 -0.40 -0.49 16 11 C -0.14 0.66 7.39 -25.92 -0.19 0.47 16 12 C -0.13 0.55 3.84 -89.81 -0.34 0.21 16 13 H 0.10 -0.33 8.14 -51.93 -0.42 -0.76 16 14 C 0.11 -0.46 5.99 -4.04 -0.02 -0.49 16 15 N -0.46 0.38 2.75 -118.58 -0.33 0.06 16 16 C -0.05 -0.01 11.58 -16.56 -0.19 -0.20 16 17 C -0.03 -0.08 11.87 -17.82 -0.21 -0.29 16 18 N -0.50 -2.07 11.25 -14.67 -0.17 -2.23 16 19 C 0.18 0.16 12.56 -90.38 -1.14 -0.97 16 20 C -0.15 0.43 7.43 -25.92 -0.19 0.24 16 21 S 0.09 -0.04 20.59 -107.50 -2.21 -2.25 16 22 H 0.38 -1.31 8.70 45.56 0.40 -0.91 16 23 H 0.12 -0.03 7.96 -51.93 -0.41 -0.45 16 24 H -0.24 -0.34 7.11 56.52 0.40 0.06 16 25 H -0.24 -0.43 7.11 56.52 0.40 -0.02 16 26 H 0.18 0.08 8.06 -52.49 -0.42 -0.35 16 27 H 0.41 -1.49 8.83 -40.82 -0.36 -1.85 16 28 H 0.10 -0.58 8.10 -51.93 -0.42 -1.00 16 29 H 0.08 -0.39 8.14 -51.93 -0.42 -0.81 16 30 H 0.09 -0.46 7.85 -51.93 -0.41 -0.87 16 31 H 0.10 -0.52 8.14 -51.92 -0.42 -0.94 16 32 H 0.17 -0.38 8.06 -52.48 -0.42 -0.81 16 33 H 0.17 0.13 8.06 -52.49 -0.42 -0.29 16 34 H 0.20 -0.47 8.06 -52.49 -0.42 -0.89 16 35 H 0.07 -0.07 8.14 -51.92 -0.42 -0.49 16 36 H 0.09 -0.33 7.90 -51.93 -0.41 -0.74 16 LS Contribution 322.94 15.07 4.87 4.87 Total: 0.00 -8.25 322.94 -12.23 -20.48 By element: Atomic # 1 Polarization: -7.01 SS G_CDS: -4.59 Total: -11.60 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -3.61 Total: -2.46 kcal Atomic # 7 Polarization: -1.76 SS G_CDS: -0.94 Total: -2.70 kcal Atomic # 8 Polarization: -0.05 SS G_CDS: -0.45 Total: -0.51 kcal Atomic # 14 Polarization: -0.53 SS G_CDS: -5.28 Total: -5.82 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.21 Total: -2.25 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -8.25 -12.23 -20.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687814_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.244 kcal (2) G-P(sol) polarization free energy of solvation -8.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds