Wall clock time and date at job start Mon Mar 8 2021 07:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86309 * 109.47010 * 2 1 4 4 C 1.50703 * 109.47116 * 119.99621 * 2 1 3 5 5 C 1.33323 * 125.94829 * 65.00034 * 4 2 1 6 6 N 1.32124 * 114.58053 * 180.02562 * 5 4 2 7 7 C 1.29683 * 116.86353 * 0.02562 * 6 5 4 8 8 N 1.38609 * 124.94818 * 179.97438 * 7 6 5 9 9 C 1.46493 * 120.00218 * 0.02562 * 8 7 6 10 10 H 1.09002 * 112.84871 * 23.80355 * 9 8 7 11 11 C 1.53777 * 113.61754 * 154.99943 * 9 8 7 12 12 C 1.53777 * 87.08249 * 89.11867 * 11 9 8 13 13 H 1.09001 * 113.61229 * 270.88513 * 12 11 9 14 14 C 1.53002 * 113.61958 * 140.06518 * 12 11 9 15 15 N 1.46496 * 109.47208 * 174.99573 * 14 12 11 16 16 C 1.36888 * 126.39558 * 90.00459 * 15 14 12 17 17 C 1.34666 * 106.81718 * 179.97438 * 16 15 14 18 18 N 1.34122 * 108.02059 * 0.02562 * 17 16 15 19 19 C 1.30499 * 109.25928 * 359.71863 * 18 17 16 20 20 C 1.53777 * 87.08206 * 25.43400 * 12 11 9 21 21 S 1.70968 * 110.10323 * 0.02562 * 7 6 5 22 22 H 0.96702 * 113.99674 * 300.00217 * 1 2 3 23 23 H 1.08994 * 109.47437 * 240.00293 * 2 1 3 24 24 H 1.48495 * 109.99763 * 178.68092 * 3 2 1 25 25 H 1.48504 * 109.99793 * 300.00085 * 3 2 1 26 26 H 1.08002 * 122.71551 * 0.04681 * 5 4 2 27 27 H 0.96999 * 120.00070 * 179.97438 * 8 7 6 28 28 H 1.09007 * 113.61596 * 203.66427 * 11 9 8 29 29 H 1.09000 * 113.61630 * 334.48320 * 11 9 8 30 30 H 1.08998 * 109.47073 * 295.00298 * 14 12 11 31 31 H 1.09007 * 109.46888 * 54.99974 * 14 12 11 32 32 H 1.08005 * 126.58738 * 359.96010 * 16 15 14 33 33 H 1.08002 * 125.98384 * 179.97438 * 17 16 15 34 34 H 1.07998 * 125.65257 * 180.29159 * 19 18 17 35 35 H 1.09008 * 113.61469 * 220.02509 * 20 12 11 36 36 H 1.09003 * 113.61848 * 89.11959 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.7622 -2.0024 1.5122 6 7 2.2973 -2.3901 2.6564 7 6 2.9099 -1.4843 3.3535 8 7 3.5285 -1.7053 4.5741 9 6 3.5204 -3.0446 5.1676 10 1 3.3882 -3.8344 4.4281 11 6 4.6882 -3.2964 6.1358 12 6 3.7833 -2.7403 7.2477 13 1 3.8612 -1.6605 7.3749 14 6 3.8958 -3.5037 8.5689 15 7 3.0922 -2.8302 9.5920 16 6 1.7755 -3.0704 9.8790 17 6 1.4365 -2.2362 10.8803 18 7 2.5165 -1.5061 11.1958 19 6 3.5136 -1.8604 10.4320 20 6 2.5877 -3.1741 6.3834 21 16 2.8422 0.0224 2.5484 22 1 -0.3933 0.4417 0.7651 23 1 1.7924 -0.5137 -0.8899 24 1 3.5346 1.7703 0.0321 25 1 1.5615 2.4680 -1.2085 26 1 1.2311 -2.6779 0.8580 27 1 3.9674 -0.9732 5.0350 28 1 4.9334 -4.3514 6.2592 29 1 5.5637 -2.6793 5.9339 30 1 3.5312 -4.5218 8.4324 31 1 4.9386 -3.5305 8.8854 32 1 1.1321 -3.7905 9.3951 33 1 0.4649 -2.1666 11.3469 34 1 4.5100 -1.4451 10.4647 35 1 1.7667 -2.4569 6.3822 36 1 2.2585 -4.1955 6.5745 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687814_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:43:04 Heat of formation + Delta-G solvation = 120.580668 kcal Electronic energy + Delta-G solvation = -20299.230602 eV Core-core repulsion = 17107.371366 eV Total energy + Delta-G solvation = -3191.859236 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.93079 -41.06691 -40.11582 -37.87362 -35.81281 -34.18756 -31.26304 -30.40109 -28.83824 -26.80725 -26.50900 -25.01659 -23.90976 -22.24557 -21.85503 -21.41117 -20.13356 -19.56640 -18.35444 -18.07585 -17.10841 -16.63625 -16.57038 -16.25961 -15.88762 -15.54512 -15.50352 -15.00654 -14.92179 -14.87629 -14.58281 -14.19787 -14.09332 -13.75011 -13.45556 -12.92185 -12.86313 -12.47545 -12.32240 -12.03437 -11.81581 -11.36603 -11.10678 -10.89861 -10.83590 -10.43424 -10.29941 -10.20710 -9.43195 -8.77701 -5.13868 -0.09624 -0.01228 0.63256 1.17634 1.24441 1.55679 1.86669 1.92966 1.95032 2.11809 2.24761 3.38745 3.47135 3.50482 3.61766 3.74685 3.81454 3.90711 3.91266 4.06266 4.18919 4.28527 4.46088 4.52497 4.60644 4.67017 4.69025 4.76026 4.79865 4.81175 4.99317 5.01164 5.05812 5.28461 5.38430 5.84091 5.85916 6.11187 6.34370 6.69965 6.96755 7.18046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.013 4.013 3 Si 0.730 3.270 4 C -0.308 4.308 5 C 0.103 3.897 6 N -0.576 5.576 7 C 0.317 3.683 8 N -0.669 5.669 9 C 0.129 3.871 10 H 0.091 0.909 11 C -0.121 4.121 12 C -0.117 4.117 13 H 0.091 0.909 14 C 0.110 3.890 15 N -0.452 5.452 16 C -0.046 4.046 17 C -0.067 4.067 18 N -0.546 5.546 19 C 0.174 3.826 20 C -0.144 4.144 21 S 0.114 5.886 22 H 0.394 0.606 23 H 0.120 0.880 24 H -0.269 1.269 25 H -0.271 1.271 26 H 0.178 0.822 27 H 0.423 0.577 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.194 0.806 33 H 0.170 0.830 34 H 0.228 0.772 35 H 0.052 0.948 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 -1.206 0.203 3.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.127 4.127 3 Si 0.633 3.367 4 C -0.431 4.431 5 C -0.048 4.048 6 N -0.302 5.302 7 C -0.054 4.054 8 N -0.308 5.308 9 C 0.021 3.979 10 H 0.109 0.891 11 C -0.160 4.160 12 C -0.136 4.136 13 H 0.109 0.891 14 C -0.011 4.011 15 N -0.134 5.134 16 C -0.180 4.180 17 C -0.214 4.214 18 N -0.265 5.265 19 C -0.109 4.109 20 C -0.183 4.183 21 S 0.363 5.637 22 H 0.244 0.756 23 H 0.137 0.863 24 H -0.195 1.195 25 H -0.197 1.197 26 H 0.195 0.805 27 H 0.262 0.738 28 H 0.136 0.864 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.211 0.789 33 H 0.187 0.813 34 H 0.244 0.756 35 H 0.071 0.929 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.423 -0.092 0.224 4.430 hybrid contribution -0.545 -1.424 -1.106 1.883 sum 3.878 -1.516 -0.882 4.256 Atomic orbital electron populations 1.86483 1.17001 1.82098 1.50248 1.24222 0.84872 1.09276 0.94315 0.94119 0.79155 0.75909 0.87504 1.25700 1.14864 0.98199 1.04354 1.21452 0.97207 0.93792 0.92313 1.66467 1.19729 1.34674 1.09341 1.23933 0.95370 0.93629 0.92439 1.43765 1.58454 1.12061 1.16559 1.21892 0.97849 0.83717 0.94394 0.89128 1.23322 0.96358 1.04006 0.92270 1.22920 0.97452 1.00409 0.92786 0.89101 1.22224 0.96957 0.96749 0.85142 1.45747 1.09927 1.29683 1.28003 1.23058 0.86505 1.05750 1.02677 1.22599 0.99022 0.98825 1.00955 1.70237 1.00977 1.27843 1.27443 1.25504 1.01096 0.92949 0.91341 1.23543 0.96759 1.02550 0.95488 1.83814 1.55179 1.10255 1.14461 0.75558 0.86282 1.19507 1.19687 0.80513 0.73801 0.86375 0.89451 0.87316 0.86504 0.78870 0.81298 0.75571 0.92931 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.18 12.88 -148.98 -1.92 -2.10 16 2 C -0.01 0.00 2.99 71.24 0.21 0.22 16 3 Si 0.73 -1.01 31.07 68.60 2.13 1.12 16 4 C -0.31 -0.39 5.73 24.57 0.14 -0.25 16 5 C 0.10 0.41 11.24 83.54 0.94 1.35 16 6 N -0.58 -3.19 9.83 -202.03 -1.99 -5.17 16 7 C 0.32 0.48 8.09 179.32 1.45 1.93 16 8 N -0.67 2.46 5.42 -327.91 -1.78 0.68 16 9 C 0.13 -0.70 4.44 45.52 0.20 -0.50 16 10 H 0.09 -0.12 7.66 -2.39 -0.02 -0.13 16 11 C -0.12 1.37 7.39 31.12 0.23 1.60 16 12 C -0.12 1.17 3.84 -10.27 -0.04 1.13 16 13 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 14 C 0.11 -1.14 5.99 86.38 0.52 -0.62 16 15 N -0.45 1.21 2.75 -529.06 -1.46 -0.24 16 16 C -0.05 -0.01 11.58 83.08 0.96 0.95 16 17 C -0.07 -0.40 11.87 83.52 0.99 0.59 16 18 N -0.55 -5.08 11.25 -200.32 -2.25 -7.34 16 19 C 0.17 0.25 12.56 180.26 2.26 2.52 16 20 C -0.14 0.92 7.43 31.12 0.23 1.16 16 21 S 0.11 -0.10 20.59 -56.49 -1.16 -1.27 16 22 H 0.39 -2.77 8.70 -74.06 -0.64 -3.41 16 23 H 0.12 0.00 7.96 -2.39 -0.02 -0.02 16 24 H -0.27 -0.85 7.11 99.48 0.71 -0.14 16 25 H -0.27 -1.23 7.11 99.48 0.71 -0.53 16 26 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 27 H 0.42 -3.27 8.83 -92.71 -0.82 -4.09 16 28 H 0.12 -1.64 8.10 -2.38 -0.02 -1.66 16 29 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 30 H 0.11 -1.35 7.85 -2.39 -0.02 -1.37 16 31 H 0.12 -1.61 8.14 -2.38 -0.02 -1.63 16 32 H 0.19 -1.05 8.06 -2.91 -0.02 -1.07 16 33 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.23 -1.30 8.06 -2.91 -0.02 -1.32 16 35 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 36 H 0.10 -0.82 7.90 -2.39 -0.02 -0.84 16 Total: 0.00 -20.80 322.94 -0.64 -21.44 By element: Atomic # 1 Polarization: -16.87 SS G_CDS: -0.31 Total: -17.18 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 8.10 Total: 10.07 kcal Atomic # 7 Polarization: -4.60 SS G_CDS: -7.47 Total: -12.07 kcal Atomic # 8 Polarization: -0.18 SS G_CDS: -1.92 Total: -2.10 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: 2.13 Total: 1.12 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.16 Total: -1.27 kcal Total: -20.80 -0.64 -21.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687814_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.016 kcal (2) G-P(sol) polarization free energy of solvation -20.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds