Wall clock time and date at job start Mon Mar 8 2021 07:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33318 * 125.95683 * 2 1 4 4 C 1.50710 * 122.70688 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47101 * 44.26864 * 4 3 2 6 6 Si 1.86306 * 109.46922 * 164.26858 * 4 3 2 7 7 N 1.32118 * 114.58213 * 179.75400 * 3 2 1 8 8 C 1.29679 * 116.86758 * 0.24385 * 7 3 2 9 9 N 1.38610 * 124.95113 * 180.02562 * 8 7 3 10 10 C 1.46501 * 120.00184 * 179.97438 * 9 8 7 11 11 H 1.09005 * 112.84797 * 23.80952 * 10 9 8 12 12 C 1.53777 * 113.61583 * 155.00503 * 10 9 8 13 13 C 1.53779 * 87.08225 * 89.11679 * 12 10 9 14 14 H 1.08998 * 113.61752 * 270.88137 * 13 12 10 15 15 C 1.53000 * 113.61301 * 140.06565 * 13 12 10 16 16 N 1.46504 * 109.47375 * 175.00079 * 15 13 12 17 17 C 1.36877 * 126.39542 * 89.99570 * 16 15 13 18 18 C 1.34677 * 106.81512 * 180.02562 * 17 16 15 19 19 N 1.34123 * 108.02150 * 0.02562 * 18 17 16 20 20 C 1.30502 * 109.25636 * 359.72589 * 19 18 17 21 21 C 1.53783 * 113.61640 * 252.50451 * 10 9 8 22 22 S 1.70971 * 110.10234 * 0.02562 * 8 7 3 23 23 H 1.08997 * 109.47250 * 84.34796 * 1 2 3 24 24 H 1.08995 * 109.47542 * 204.35333 * 1 2 3 25 25 H 1.09007 * 109.46883 * 324.34966 * 1 2 3 26 26 H 1.08997 * 109.47048 * 284.26605 * 4 3 2 27 27 H 0.96697 * 113.99939 * 59.99732 * 5 4 3 28 28 H 1.48502 * 109.99859 * 180.02562 * 6 4 3 29 29 H 1.48499 * 109.99763 * 301.31969 * 6 4 3 30 30 H 0.96997 * 119.99986 * 0.02562 * 9 8 7 31 31 H 1.09005 * 113.61723 * 203.66817 * 12 10 9 32 32 H 1.09005 * 113.61616 * 334.56549 * 12 10 9 33 33 H 1.08996 * 109.47247 * 295.00163 * 15 13 12 34 34 H 1.09005 * 109.47422 * 55.00171 * 15 13 12 35 35 H 1.08001 * 126.59405 * 359.96591 * 17 16 15 36 36 H 1.07996 * 125.98629 * 180.02562 * 18 17 16 37 37 H 1.08000 * 125.65266 * 180.28865 * 20 19 18 38 38 H 1.08996 * 113.61375 * 25.42572 * 21 10 9 39 39 H 1.09002 * 113.61692 * 156.33453 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2897 1.0792 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.6698 2.5754 0.9414 6 14 3.0905 3.6764 0.4766 7 7 3.5850 0.8186 0.0052 8 6 3.9314 -0.4311 0.0046 9 7 5.2383 -0.8928 0.0100 10 6 5.5064 -2.3331 0.0093 11 1 4.6822 -2.9168 -0.4008 12 6 6.8773 -2.7042 -0.5803 13 6 7.4435 -2.5456 0.8406 14 1 7.7737 -1.5321 1.0685 15 6 8.4836 -3.6059 1.2078 16 7 9.0470 -3.3017 2.5255 17 6 8.5726 -3.7396 3.7325 18 6 9.3825 -3.2272 4.6786 19 7 10.3253 -2.4959 4.0661 20 6 10.1339 -2.5404 2.7760 21 6 6.0294 -2.8630 1.3548 22 16 2.5412 -1.4262 -0.0038 23 1 -0.3633 0.1012 -1.0226 24 1 -0.3634 -0.9362 0.4237 25 1 -0.3633 0.8351 0.5990 26 1 1.3730 2.7295 -0.9952 27 1 0.9258 2.3686 1.8507 28 1 2.5624 5.0643 0.4815 29 1 3.6232 3.3314 1.8192 30 1 5.9754 -0.2623 0.0150 31 1 6.9279 -3.7251 -0.9591 32 1 7.2616 -1.9697 -1.2880 33 1 8.0091 -4.5868 1.2333 34 1 9.2800 -3.6068 0.4636 35 1 7.7133 -4.3734 3.8949 36 1 9.2891 -3.3786 5.7438 37 1 10.7426 -2.0481 2.0319 38 1 5.7292 -2.2566 2.2093 39 1 5.8481 -3.9273 1.5052 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14687814_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:43:07 Heat of formation + Delta-G solvation = 113.367359 kcal Electronic energy + Delta-G solvation = -22354.958205 eV Core-core repulsion = 19007.248557 eV Total energy + Delta-G solvation = -3347.709647 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.98561 -41.27220 -40.66201 -37.85737 -36.01100 -34.40340 -32.53572 -30.43328 -29.50676 -28.60599 -27.13746 -25.71465 -24.66331 -24.25985 -22.25219 -21.93112 -21.06005 -20.59702 -18.92520 -18.52787 -17.96643 -17.53333 -16.88669 -16.74581 -16.54756 -15.87164 -15.66910 -15.52695 -15.14907 -14.95957 -14.80398 -14.40489 -14.18032 -14.14734 -13.91066 -13.85018 -13.71474 -13.37173 -13.15664 -12.79778 -12.61295 -12.32078 -12.07945 -11.82758 -11.70923 -11.05888 -10.85631 -10.64271 -10.51956 -10.47134 -10.09304 -9.43219 -8.70987 -4.66771 -0.03405 0.11683 0.72795 1.12345 1.42429 1.71018 1.76275 1.84193 1.91389 2.11498 2.31052 2.98166 3.09287 3.27675 3.34116 3.35917 3.47793 3.71697 3.82235 3.89628 3.97054 4.03299 4.12414 4.24483 4.29795 4.33380 4.39471 4.52726 4.55420 4.62301 4.67195 4.74073 4.78443 4.83310 4.88157 5.09142 5.28833 5.30414 5.52297 5.82950 6.15707 6.23434 6.35168 6.88972 7.18590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.231 4.231 3 C 0.064 3.936 4 C -0.042 4.042 5 O -0.526 6.526 6 Si 0.723 3.277 7 N -0.537 5.537 8 C 0.319 3.681 9 N -0.677 5.677 10 C 0.128 3.872 11 H 0.099 0.901 12 C -0.133 4.133 13 C -0.128 4.128 14 H 0.100 0.900 15 C 0.114 3.886 16 N -0.458 5.458 17 C -0.055 4.055 18 C -0.030 4.030 19 N -0.495 5.495 20 C 0.180 3.820 21 C -0.150 4.150 22 S 0.102 5.898 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.377 0.623 28 H -0.263 1.263 29 H -0.268 1.268 30 H 0.414 0.586 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.203 0.797 38 H 0.078 0.922 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.273 -4.805 -4.354 6.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.354 4.354 3 C -0.066 4.066 4 C -0.154 4.154 5 O -0.331 6.331 6 Si 0.624 3.376 7 N -0.263 5.263 8 C -0.052 4.052 9 N -0.318 5.318 10 C 0.021 3.979 11 H 0.117 0.883 12 C -0.172 4.172 13 C -0.147 4.147 14 H 0.118 0.882 15 C -0.009 4.009 16 N -0.141 5.141 17 C -0.187 4.187 18 C -0.178 4.178 19 N -0.213 5.213 20 C -0.103 4.103 21 C -0.190 4.190 22 S 0.351 5.649 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.117 0.883 26 H 0.141 0.859 27 H 0.224 0.776 28 H -0.189 1.189 29 H -0.193 1.193 30 H 0.252 0.748 31 H 0.123 0.877 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.189 0.811 36 H 0.186 0.814 37 H 0.219 0.781 38 H 0.096 0.904 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.502 -4.519 -4.054 6.092 hybrid contribution -1.151 -0.030 0.471 1.244 sum -0.648 -4.549 -3.583 5.827 Atomic orbital electron populations 1.20348 0.86552 1.03588 1.03253 1.25184 1.01335 0.92761 1.16077 1.20032 0.86638 0.97254 1.02717 1.24511 0.98166 0.95626 0.97143 1.86553 1.34669 1.91272 1.20616 0.93600 0.81793 0.75554 0.86628 1.65683 1.17157 1.16502 1.26973 1.23205 0.91619 0.91487 0.98855 1.43529 1.01901 1.06050 1.80271 1.21884 0.98429 0.80076 0.97490 0.88349 1.23336 0.94075 1.03732 0.96024 1.23040 0.94602 1.00041 0.97012 0.88213 1.21945 0.97536 0.99257 0.82146 1.45569 1.23228 1.38307 1.06995 1.22722 1.04034 1.07371 0.84597 1.22357 0.94746 1.00909 0.99805 1.70317 1.25498 1.21085 1.04388 1.25037 0.91250 0.99086 0.94901 1.23634 0.94998 1.02321 0.98015 1.83969 0.96423 1.10621 1.73869 0.91117 0.91933 0.88333 0.85898 0.77550 1.18943 1.19256 0.74791 0.87670 0.89665 0.88669 0.88418 0.81096 0.81434 0.78057 0.90372 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.01 9.97 36.00 0.36 0.35 16 2 C -0.23 -0.34 6.49 -36.03 -0.23 -0.57 16 3 C 0.06 0.13 6.00 -84.18 -0.51 -0.38 16 4 C -0.04 -0.05 2.74 36.01 0.10 0.05 16 5 O -0.53 -0.61 10.21 -35.23 -0.36 -0.97 16 6 Si 0.72 1.02 31.88 -169.99 -5.42 -4.40 16 7 N -0.54 -1.26 8.61 -11.36 -0.10 -1.35 16 8 C 0.32 0.27 8.24 -87.69 -0.72 -0.45 16 9 N -0.68 1.17 5.42 -54.99 -0.30 0.87 16 10 C 0.13 -0.49 4.31 -67.12 -0.29 -0.78 16 11 H 0.10 -0.37 7.06 -51.93 -0.37 -0.74 16 12 C -0.13 0.76 7.39 -25.92 -0.19 0.57 16 13 C -0.13 0.61 3.84 -89.81 -0.34 0.27 16 14 H 0.10 -0.34 8.14 -51.93 -0.42 -0.77 16 15 C 0.11 -0.53 5.99 -4.04 -0.02 -0.55 16 16 N -0.46 0.50 2.75 -118.57 -0.33 0.18 16 17 C -0.05 0.00 11.58 -16.56 -0.19 -0.19 16 18 C -0.03 -0.07 11.87 -17.81 -0.21 -0.28 16 19 N -0.50 -2.09 11.25 -14.66 -0.16 -2.25 16 20 C 0.18 0.15 12.56 -90.37 -1.14 -0.98 16 21 C -0.15 0.61 7.43 -25.92 -0.19 0.42 16 22 S 0.10 0.02 21.69 -107.50 -2.33 -2.31 16 23 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 24 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 25 H 0.10 0.03 5.67 -51.93 -0.29 -0.26 16 26 H 0.12 0.02 7.96 -51.93 -0.41 -0.39 16 27 H 0.38 -0.41 8.70 45.56 0.40 -0.01 16 28 H -0.26 -0.98 7.11 56.52 0.40 -0.58 16 29 H -0.27 -1.20 7.11 56.52 0.40 -0.80 16 30 H 0.41 -0.93 8.82 -40.82 -0.36 -1.29 16 31 H 0.10 -0.73 8.10 -51.93 -0.42 -1.15 16 32 H 0.08 -0.47 8.14 -51.93 -0.42 -0.89 16 33 H 0.09 -0.54 7.85 -51.93 -0.41 -0.95 16 34 H 0.10 -0.57 8.14 -51.93 -0.42 -1.00 16 35 H 0.17 -0.45 8.06 -52.49 -0.42 -0.88 16 36 H 0.17 0.13 8.06 -52.49 -0.42 -0.29 16 37 H 0.20 -0.47 8.06 -52.49 -0.42 -0.89 16 38 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 39 H 0.10 -0.50 7.90 -51.93 -0.41 -0.91 16 LS Contribution 339.52 15.07 5.12 5.12 Total: 0.00 -8.17 339.52 -12.74 -20.91 By element: Atomic # 1 Polarization: -7.97 SS G_CDS: -5.28 Total: -13.25 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -3.58 Total: -2.54 kcal Atomic # 7 Polarization: -1.67 SS G_CDS: -0.89 Total: -2.56 kcal Atomic # 8 Polarization: -0.61 SS G_CDS: -0.36 Total: -0.97 kcal Atomic # 14 Polarization: 1.02 SS G_CDS: -5.42 Total: -4.40 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.33 Total: -2.31 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -8.17 -12.74 -20.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687814_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.282 kcal (2) G-P(sol) polarization free energy of solvation -8.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds