Wall clock time and date at job start Mon Mar 8 2021 07:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33318 * 125.95683 * 2 1 4 4 C 1.50710 * 122.70688 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47101 * 44.26864 * 4 3 2 6 6 Si 1.86306 * 109.46922 * 164.26858 * 4 3 2 7 7 N 1.32118 * 114.58213 * 179.75400 * 3 2 1 8 8 C 1.29679 * 116.86758 * 0.24385 * 7 3 2 9 9 N 1.38610 * 124.95113 * 180.02562 * 8 7 3 10 10 C 1.46501 * 120.00184 * 179.97438 * 9 8 7 11 11 H 1.09005 * 112.84797 * 23.80952 * 10 9 8 12 12 C 1.53777 * 113.61583 * 155.00503 * 10 9 8 13 13 C 1.53779 * 87.08225 * 89.11679 * 12 10 9 14 14 H 1.08998 * 113.61752 * 270.88137 * 13 12 10 15 15 C 1.53000 * 113.61301 * 140.06565 * 13 12 10 16 16 N 1.46504 * 109.47375 * 175.00079 * 15 13 12 17 17 C 1.36877 * 126.39542 * 89.99570 * 16 15 13 18 18 C 1.34677 * 106.81512 * 180.02562 * 17 16 15 19 19 N 1.34123 * 108.02150 * 0.02562 * 18 17 16 20 20 C 1.30502 * 109.25636 * 359.72589 * 19 18 17 21 21 C 1.53783 * 113.61640 * 252.50451 * 10 9 8 22 22 S 1.70971 * 110.10234 * 0.02562 * 8 7 3 23 23 H 1.08997 * 109.47250 * 84.34796 * 1 2 3 24 24 H 1.08995 * 109.47542 * 204.35333 * 1 2 3 25 25 H 1.09007 * 109.46883 * 324.34966 * 1 2 3 26 26 H 1.08997 * 109.47048 * 284.26605 * 4 3 2 27 27 H 0.96697 * 113.99939 * 59.99732 * 5 4 3 28 28 H 1.48502 * 109.99859 * 180.02562 * 6 4 3 29 29 H 1.48499 * 109.99763 * 301.31969 * 6 4 3 30 30 H 0.96997 * 119.99986 * 0.02562 * 9 8 7 31 31 H 1.09005 * 113.61723 * 203.66817 * 12 10 9 32 32 H 1.09005 * 113.61616 * 334.56549 * 12 10 9 33 33 H 1.08996 * 109.47247 * 295.00163 * 15 13 12 34 34 H 1.09005 * 109.47422 * 55.00171 * 15 13 12 35 35 H 1.08001 * 126.59405 * 359.96591 * 17 16 15 36 36 H 1.07996 * 125.98629 * 180.02562 * 18 17 16 37 37 H 1.08000 * 125.65266 * 180.28865 * 20 19 18 38 38 H 1.08996 * 113.61375 * 25.42572 * 21 10 9 39 39 H 1.09002 * 113.61692 * 156.33453 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2897 1.0792 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.6698 2.5754 0.9414 6 14 3.0905 3.6764 0.4766 7 7 3.5850 0.8186 0.0052 8 6 3.9314 -0.4311 0.0046 9 7 5.2383 -0.8928 0.0100 10 6 5.5064 -2.3331 0.0093 11 1 4.6822 -2.9168 -0.4008 12 6 6.8773 -2.7042 -0.5803 13 6 7.4435 -2.5456 0.8406 14 1 7.7737 -1.5321 1.0685 15 6 8.4836 -3.6059 1.2078 16 7 9.0470 -3.3017 2.5255 17 6 8.5726 -3.7396 3.7325 18 6 9.3825 -3.2272 4.6786 19 7 10.3253 -2.4959 4.0661 20 6 10.1339 -2.5404 2.7760 21 6 6.0294 -2.8630 1.3548 22 16 2.5412 -1.4262 -0.0038 23 1 -0.3633 0.1012 -1.0226 24 1 -0.3634 -0.9362 0.4237 25 1 -0.3633 0.8351 0.5990 26 1 1.3730 2.7295 -0.9952 27 1 0.9258 2.3686 1.8507 28 1 2.5624 5.0643 0.4815 29 1 3.6232 3.3314 1.8192 30 1 5.9754 -0.2623 0.0150 31 1 6.9279 -3.7251 -0.9591 32 1 7.2616 -1.9697 -1.2880 33 1 8.0091 -4.5868 1.2333 34 1 9.2800 -3.6068 0.4636 35 1 7.7133 -4.3734 3.8949 36 1 9.2891 -3.3786 5.7438 37 1 10.7426 -2.0481 2.0319 38 1 5.7292 -2.2566 2.2093 39 1 5.8481 -3.9273 1.5052 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687814_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:43:06 Heat of formation + Delta-G solvation = 117.468139 kcal Electronic energy + Delta-G solvation = -22354.780382 eV Core-core repulsion = 19007.248557 eV Total energy + Delta-G solvation = -3347.531824 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.94614 -41.21096 -40.47510 -37.90654 -35.90180 -34.32643 -32.51401 -30.42785 -29.47619 -28.47757 -26.75505 -25.73156 -24.57720 -24.10412 -22.26076 -21.86455 -20.89336 -20.49622 -18.87447 -18.39748 -18.01382 -17.44772 -16.80599 -16.58200 -16.43620 -15.85010 -15.58675 -15.49806 -15.04335 -14.92003 -14.66353 -14.35920 -14.27503 -14.07856 -13.86045 -13.69365 -13.43164 -13.39857 -12.86464 -12.83436 -12.46470 -12.32551 -12.00764 -11.80379 -11.39178 -10.96730 -10.90222 -10.70039 -10.55193 -10.45385 -10.11611 -9.44719 -8.67530 -4.82521 -0.06690 0.11523 0.69392 1.15919 1.30798 1.65754 1.79824 1.85352 1.93073 1.94921 2.22839 3.28568 3.34675 3.44923 3.46041 3.67221 3.70895 3.88985 4.02570 4.11159 4.17609 4.27660 4.32303 4.36471 4.50873 4.58707 4.62444 4.74776 4.76653 4.76827 4.79800 4.86707 4.96889 5.01193 5.05891 5.20859 5.30363 5.36247 5.70034 5.82770 6.24193 6.32888 6.38007 6.88046 7.16510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.247 4.247 3 C 0.052 3.948 4 C -0.039 4.039 5 O -0.532 6.532 6 Si 0.782 3.218 7 N -0.562 5.562 8 C 0.310 3.690 9 N -0.672 5.672 10 C 0.118 3.882 11 H 0.102 0.898 12 C -0.116 4.116 13 C -0.121 4.121 14 H 0.084 0.916 15 C 0.110 3.890 16 N -0.452 5.452 17 C -0.044 4.044 18 C -0.070 4.070 19 N -0.548 5.548 20 C 0.172 3.828 21 C -0.148 4.148 22 S 0.126 5.874 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.135 0.865 27 H 0.385 0.615 28 H -0.295 1.295 29 H -0.312 1.312 30 H 0.415 0.585 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.198 0.802 36 H 0.169 0.831 37 H 0.227 0.773 38 H 0.052 0.948 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 -6.481 -5.925 8.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.370 4.370 3 C -0.078 4.078 4 C -0.152 4.152 5 O -0.339 6.339 6 Si 0.689 3.311 7 N -0.290 5.290 8 C -0.061 4.061 9 N -0.312 5.312 10 C 0.012 3.988 11 H 0.120 0.880 12 C -0.154 4.154 13 C -0.140 4.140 14 H 0.102 0.898 15 C -0.011 4.011 16 N -0.133 5.133 17 C -0.178 4.178 18 C -0.217 4.217 19 N -0.267 5.267 20 C -0.110 4.110 21 C -0.187 4.187 22 S 0.375 5.625 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.152 0.848 27 H 0.234 0.766 28 H -0.223 1.223 29 H -0.239 1.239 30 H 0.253 0.747 31 H 0.146 0.854 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.215 0.785 36 H 0.186 0.814 37 H 0.243 0.757 38 H 0.071 0.929 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.269 -6.223 -5.655 8.413 hybrid contribution -1.054 0.467 1.007 1.531 sum -0.785 -5.755 -4.648 7.439 Atomic orbital electron populations 1.20342 0.85858 1.03824 1.03423 1.25406 1.02069 0.93308 1.16256 1.20130 0.86829 0.97635 1.03185 1.24498 0.97801 0.95230 0.97675 1.86530 1.34811 1.91259 1.21303 0.92882 0.80680 0.73290 0.84202 1.65679 1.17452 1.17448 1.28390 1.23494 0.92755 0.91473 0.98357 1.43743 1.01057 1.07141 1.79233 1.22110 0.99699 0.78797 0.98178 0.88038 1.23307 0.91930 1.04992 0.95210 1.22919 0.94112 0.99252 0.97740 0.89784 1.22252 0.98136 0.99999 0.80676 1.45761 1.22436 1.37173 1.07978 1.23080 1.03787 1.06426 0.84473 1.22610 0.95912 1.02480 1.00692 1.70232 1.27237 1.22877 1.06342 1.25485 0.91943 0.99120 0.94498 1.23652 0.95425 1.02879 0.96780 1.83778 0.95507 1.09591 1.73632 0.90816 0.91221 0.88678 0.84784 0.76609 1.22324 1.23938 0.74655 0.85407 0.89495 0.86745 0.86563 0.78508 0.81404 0.75723 0.92884 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.01 9.97 71.23 0.71 0.70 16 2 C -0.25 -0.74 6.49 24.57 0.16 -0.58 16 3 C 0.05 0.24 6.00 41.41 0.25 0.49 16 4 C -0.04 -0.11 2.74 71.24 0.20 0.09 16 5 O -0.53 -1.51 10.21 -148.98 -1.52 -3.03 16 6 Si 0.78 3.29 31.88 68.60 2.19 5.48 16 7 N -0.56 -2.97 8.61 -189.86 -1.63 -4.61 16 8 C 0.31 0.57 8.24 179.32 1.48 2.05 16 9 N -0.67 2.44 5.42 -327.89 -1.78 0.66 16 10 C 0.12 -1.05 4.31 45.52 0.20 -0.86 16 11 H 0.10 -0.94 7.06 -2.38 -0.02 -0.95 16 12 C -0.12 1.58 7.39 31.12 0.23 1.81 16 13 C -0.12 1.34 3.84 -10.27 -0.04 1.30 16 14 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 15 C 0.11 -1.27 5.99 86.38 0.52 -0.76 16 16 N -0.45 1.38 2.75 -529.05 -1.46 -0.08 16 17 C -0.04 0.02 11.58 83.09 0.96 0.98 16 18 C -0.07 -0.44 11.87 83.53 0.99 0.55 16 19 N -0.55 -5.42 11.25 -200.31 -2.25 -7.68 16 20 C 0.17 0.33 12.56 180.26 2.26 2.59 16 21 C -0.15 1.38 7.43 31.12 0.23 1.61 16 22 S 0.13 0.01 21.69 -56.49 -1.23 -1.21 16 23 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 24 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 25 H 0.09 0.07 5.67 -2.38 -0.01 0.06 16 26 H 0.13 0.04 7.96 -2.39 -0.02 0.02 16 27 H 0.38 -0.50 8.70 -74.06 -0.64 -1.14 16 28 H -0.29 -2.71 7.11 99.48 0.71 -2.00 16 29 H -0.31 -3.58 7.11 99.48 0.71 -2.87 16 30 H 0.41 -1.80 8.82 -92.71 -0.82 -2.62 16 31 H 0.13 -2.24 8.10 -2.38 -0.02 -2.26 16 32 H 0.09 -1.13 8.14 -2.38 -0.02 -1.15 16 33 H 0.11 -1.69 7.85 -2.39 -0.02 -1.71 16 34 H 0.12 -1.70 8.14 -2.38 -0.02 -1.72 16 35 H 0.20 -1.32 8.06 -2.91 -0.02 -1.35 16 36 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.23 -1.12 8.06 -2.91 -0.02 -1.14 16 38 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.11 -1.46 7.90 -2.39 -0.02 -1.48 16 Total: 0.00 -21.35 339.52 0.12 -21.22 By element: Atomic # 1 Polarization: -20.39 SS G_CDS: -0.34 Total: -20.73 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 8.15 Total: 9.97 kcal Atomic # 7 Polarization: -4.59 SS G_CDS: -7.12 Total: -11.71 kcal Atomic # 8 Polarization: -1.51 SS G_CDS: -1.52 Total: -3.03 kcal Atomic # 14 Polarization: 3.29 SS G_CDS: 2.19 Total: 5.48 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -1.23 Total: -1.21 kcal Total: -21.35 0.12 -21.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687814_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.692 kcal (2) G-P(sol) polarization free energy of solvation -21.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds