Wall clock time and date at job start Mon Mar 8 2021 07:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86293 * 109.47282 * 2 1 4 4 C 1.50703 * 109.47536 * 120.00517 * 2 1 3 5 5 C 1.37985 * 120.32472 * 245.01988 * 4 2 1 6 6 N 1.32004 * 120.89885 * 179.71800 * 5 4 2 7 7 C 1.32342 * 121.64663 * 0.52493 * 6 5 4 8 8 N 1.39143 * 119.71666 * 179.75527 * 7 6 5 9 9 C 1.46502 * 120.00042 * 359.72345 * 8 7 6 10 10 H 1.09000 * 112.84885 * 23.80602 * 9 8 7 11 11 C 1.53777 * 113.61270 * 155.00302 * 9 8 7 12 12 C 1.53775 * 87.08312 * 89.20090 * 11 9 8 13 13 H 1.09001 * 113.61557 * 270.79833 * 12 11 9 14 14 C 1.52998 * 113.61822 * 139.97926 * 12 11 9 15 15 N 1.46500 * 109.47471 * 174.99777 * 14 12 11 16 16 C 1.36883 * 126.40270 * 270.00215 * 15 14 12 17 17 C 1.34666 * 106.81734 * 180.02562 * 16 15 14 18 18 N 1.34126 * 108.02240 * 359.97438 * 17 16 15 19 19 C 1.30494 * 109.25549 * 0.02562 * 18 17 16 20 20 C 1.53777 * 113.69081 * 252.53626 * 9 8 7 21 21 C 1.39343 * 120.56338 * 359.48024 * 7 6 5 22 22 F 1.35091 * 120.47148 * 180.27638 * 21 7 6 23 23 C 1.38441 * 119.05570 * 0.24713 * 21 7 6 24 24 H 0.96702 * 113.99937 * 59.99650 * 1 2 3 25 25 H 1.09011 * 109.47170 * 240.00070 * 2 1 3 26 26 H 1.48503 * 110.00273 * 298.68293 * 3 2 1 27 27 H 1.48499 * 110.00157 * 60.00487 * 3 2 1 28 28 H 1.08001 * 119.55034 * 359.97438 * 5 4 2 29 29 H 0.97002 * 119.99838 * 179.72829 * 8 7 6 30 30 H 1.09008 * 113.61462 * 334.65142 * 11 9 8 31 31 H 1.09000 * 113.69211 * 203.76125 * 11 9 8 32 32 H 1.09008 * 109.46958 * 54.99892 * 14 12 11 33 33 H 1.09002 * 109.47241 * 295.00722 * 14 12 11 34 34 H 1.08001 * 126.58630 * 0.05386 * 16 15 14 35 35 H 1.07999 * 125.98413 * 180.02562 * 17 16 15 36 36 H 1.08006 * 125.64795 * 180.26456 * 19 18 17 37 37 H 1.09006 * 113.61692 * 156.32415 * 20 9 8 38 38 H 1.09000 * 113.61820 * 25.42559 * 20 9 8 39 39 H 1.08001 * 120.75865 * 180.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.6379 -0.0202 2.1939 6 7 3.0785 -0.6300 3.2786 7 6 2.8719 -1.9213 3.4815 8 7 3.3587 -2.5244 4.6371 9 6 4.1016 -1.7317 5.6199 10 1 3.8676 -0.6683 5.5700 11 6 4.0471 -2.3084 7.0444 12 6 5.2994 -3.1224 6.6784 13 1 5.0753 -4.0938 6.2376 14 6 6.3282 -3.2056 7.8078 15 7 7.4219 -4.0944 7.4077 16 6 7.4876 -5.4458 7.6150 17 6 8.6566 -5.8636 7.0932 18 7 9.2872 -4.7966 6.5806 19 6 8.5537 -3.7333 6.7655 20 6 5.6100 -2.0301 5.6414 21 6 2.1661 -2.6809 2.5506 22 9 1.9515 -3.9977 2.7624 23 6 1.6874 -2.0666 1.4060 24 1 -0.3933 0.4418 -0.7650 25 1 1.7924 -0.5139 -0.8901 26 1 1.5879 2.4586 -1.2242 27 1 1.5616 2.4678 1.2085 28 1 2.8295 1.0343 2.0607 29 1 3.2062 -3.4698 4.7919 30 1 3.1668 -2.9228 7.2334 31 1 4.2209 -1.5668 7.8241 32 1 5.8509 -3.5982 8.7058 33 1 6.7244 -2.2110 8.0123 34 1 6.7445 -6.0591 8.1030 35 1 9.0218 -6.8800 7.0876 36 1 8.8074 -2.7312 6.4524 37 1 6.2116 -1.2114 6.0364 38 1 5.9916 -2.4198 4.6977 39 1 1.1366 -2.6290 0.6665 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687814_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:43:08 Heat of formation + Delta-G solvation = 70.831252 kcal Electronic energy + Delta-G solvation = -24131.651500 eV Core-core repulsion = 20379.028745 eV Total energy + Delta-G solvation = -3752.622755 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.128 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.00978 -42.93990 -41.52041 -40.30493 -38.00457 -35.98042 -34.42452 -33.25575 -31.36530 -30.36663 -28.76728 -26.74954 -26.39355 -25.33777 -23.74579 -22.87271 -22.24226 -21.77957 -20.37602 -19.48328 -18.63269 -18.34403 -18.15917 -18.08400 -16.99929 -16.65872 -16.46564 -16.23921 -15.72985 -15.47889 -15.22700 -15.05708 -15.04626 -14.78371 -14.65115 -14.25017 -14.22610 -14.03156 -13.81253 -13.65456 -13.37922 -12.92146 -12.56803 -12.29604 -12.07311 -11.86256 -11.33661 -11.18199 -10.90163 -10.77595 -10.73713 -10.43920 -10.42738 -9.44232 -8.80265 -4.89900 -0.12846 0.06764 1.16436 1.29908 1.62429 1.90616 1.94466 1.96922 2.23902 2.46469 2.98412 3.19000 3.36537 3.44119 3.52577 3.63920 3.73211 3.83089 3.84434 3.89433 4.04460 4.10204 4.13258 4.27500 4.34124 4.43990 4.54613 4.60824 4.67997 4.74765 4.78554 4.80010 4.85202 4.96821 5.03668 5.04775 5.18910 5.36622 5.43561 5.83324 5.98461 6.13880 6.33187 6.60502 6.90413 7.17159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.072 4.072 3 Si 0.762 3.238 4 C -0.167 4.167 5 C 0.146 3.854 6 N -0.521 5.521 7 C 0.383 3.617 8 N -0.698 5.698 9 C 0.127 3.873 10 H 0.103 0.897 11 C -0.124 4.124 12 C -0.120 4.120 13 H 0.081 0.919 14 C 0.112 3.888 15 N -0.452 5.452 16 C -0.051 4.051 17 C -0.066 4.066 18 N -0.547 5.547 19 C 0.177 3.823 20 C -0.143 4.143 21 C -0.039 4.039 22 F -0.141 7.141 23 C -0.042 4.042 24 H 0.397 0.603 25 H 0.099 0.901 26 H -0.283 1.283 27 H -0.290 1.290 28 H 0.181 0.819 29 H 0.414 0.586 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.198 0.802 35 H 0.171 0.829 36 H 0.225 0.775 37 H 0.111 0.889 38 H 0.050 0.950 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 3.626 0.807 4.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.182 4.182 3 Si 0.666 3.334 4 C -0.172 4.172 5 C -0.011 4.011 6 N -0.238 5.238 7 C 0.145 3.855 8 N -0.330 5.330 9 C 0.021 3.979 10 H 0.121 0.879 11 C -0.163 4.163 12 C -0.139 4.139 13 H 0.099 0.901 14 C -0.010 4.010 15 N -0.134 5.134 16 C -0.185 4.185 17 C -0.213 4.213 18 N -0.266 5.266 19 C -0.106 4.106 20 C -0.182 4.182 21 C -0.065 4.065 22 F -0.120 7.120 23 C -0.068 4.068 24 H 0.248 0.752 25 H 0.117 0.883 26 H -0.210 1.210 27 H -0.217 1.217 28 H 0.198 0.802 29 H 0.251 0.749 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.215 0.785 35 H 0.188 0.812 36 H 0.241 0.759 37 H 0.130 0.870 38 H 0.069 0.931 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.681 4.747 1.796 5.121 hybrid contribution -2.478 -1.623 -0.892 3.094 sum -3.159 3.124 0.903 4.534 Atomic orbital electron populations 1.86546 1.18521 1.80752 1.51211 1.24796 0.84059 1.11816 0.97480 0.94196 0.90214 0.71874 0.77109 1.20036 1.04328 0.93556 0.99239 1.22682 0.91433 1.00175 0.86827 1.67347 1.25741 1.07235 1.23516 1.18541 0.90511 0.89113 0.87373 1.44296 1.58562 1.11939 1.18246 1.21866 0.91477 0.96485 0.88059 0.87932 1.23336 0.97015 0.99845 0.96084 1.22904 0.95946 0.98734 0.96312 0.90079 1.22229 0.85471 0.95082 0.98174 1.45758 1.17076 1.07762 1.42790 1.23123 1.02120 0.84747 1.08481 1.22619 0.94917 0.98950 1.04828 1.70239 1.32676 0.99792 1.23872 1.25429 0.84660 1.00617 0.99867 1.23564 0.96773 0.98979 0.98876 1.18135 1.09795 0.79443 0.99166 1.91460 1.93829 1.31688 1.95011 1.21461 0.95200 0.95015 0.95147 0.75245 0.88320 1.20982 1.21749 0.80238 0.74883 0.90416 0.85982 0.87229 0.86430 0.78529 0.81159 0.75904 0.87027 0.93083 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.11 12.82 -148.98 -1.91 -2.02 16 2 C -0.07 0.20 2.81 71.24 0.20 0.40 16 3 Si 0.76 -3.44 29.88 68.60 2.05 -1.39 16 4 C -0.17 -0.21 5.39 -19.76 -0.11 -0.31 16 5 C 0.15 0.19 9.84 84.61 0.83 1.03 16 6 N -0.52 -2.06 9.13 -193.03 -1.76 -3.82 16 7 C 0.38 1.56 7.49 133.08 1.00 2.56 16 8 N -0.70 0.10 5.42 -321.79 -1.74 -1.64 16 9 C 0.13 -0.52 4.35 45.51 0.20 -0.32 16 10 H 0.10 -0.21 7.40 -2.39 -0.02 -0.23 16 11 C -0.12 1.14 7.39 31.12 0.23 1.37 16 12 C -0.12 0.93 3.84 -10.27 -0.04 0.90 16 13 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 14 C 0.11 -0.99 5.99 86.38 0.52 -0.48 16 15 N -0.45 0.58 2.75 -529.06 -1.46 -0.88 16 16 C -0.05 -0.05 11.58 83.09 0.96 0.91 16 17 C -0.07 -0.46 11.87 83.52 0.99 0.53 16 18 N -0.55 -5.80 11.25 -200.31 -2.25 -8.05 16 19 C 0.18 0.55 12.56 180.26 2.26 2.81 16 20 C -0.14 0.81 7.43 31.12 0.23 1.04 16 21 C -0.04 -0.19 7.35 22.58 0.17 -0.03 16 22 F -0.14 -0.86 16.65 44.97 0.75 -0.12 16 23 C -0.04 -0.13 9.82 22.48 0.22 0.09 16 24 H 0.40 -3.11 8.74 -74.06 -0.65 -3.75 16 25 H 0.10 -0.67 7.96 -2.38 -0.02 -0.69 16 26 H -0.28 0.07 7.11 99.48 0.71 0.77 16 27 H -0.29 -0.59 7.05 99.48 0.70 0.11 16 28 H 0.18 -0.60 4.87 -2.91 -0.01 -0.61 16 29 H 0.41 -0.60 8.18 -92.71 -0.76 -1.36 16 30 H 0.08 -0.65 8.14 -2.38 -0.02 -0.66 16 31 H 0.12 -1.56 8.10 -2.39 -0.02 -1.58 16 32 H 0.11 -1.25 8.14 -2.38 -0.02 -1.27 16 33 H 0.12 -1.46 7.84 -2.39 -0.02 -1.48 16 34 H 0.20 -1.03 8.06 -2.91 -0.02 -1.05 16 35 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 36 H 0.22 -0.79 8.06 -2.91 -0.02 -0.81 16 37 H 0.11 -1.00 7.90 -2.38 -0.02 -1.02 16 38 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.16 0.10 8.06 -2.91 -0.02 0.08 16 Total: 0.00 -21.77 335.55 1.06 -20.71 By element: Atomic # 1 Polarization: -13.01 SS G_CDS: -0.28 Total: -13.28 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 7.66 Total: 10.50 kcal Atomic # 7 Polarization: -7.17 SS G_CDS: -7.21 Total: -14.39 kcal Atomic # 8 Polarization: -0.11 SS G_CDS: -1.91 Total: -2.02 kcal Atomic # 9 Polarization: -0.86 SS G_CDS: 0.75 Total: -0.12 kcal Atomic # 14 Polarization: -3.44 SS G_CDS: 2.05 Total: -1.39 kcal Total: -21.77 1.06 -20.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687814_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.537 kcal (2) G-P(sol) polarization free energy of solvation -21.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds