Wall clock time and date at job start Mon Mar 8 2021 05:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86299 * 109.47414 * 2 1 4 4 C 1.50711 * 109.46395 * 240.00430 * 2 1 3 5 5 C 1.38604 * 120.71576 * 119.97971 * 4 2 1 6 6 N 1.32282 * 119.19157 * 180.02562 * 5 4 2 7 7 C 1.32494 * 120.74101 * 0.02562 * 6 5 4 8 8 N 1.38408 * 119.21229 * 179.97438 * 7 6 5 9 9 C 1.46502 * 119.99469 * 180.02562 * 8 7 6 10 10 H 1.09000 * 112.84908 * 336.19286 * 9 8 7 11 11 C 1.53780 * 113.61636 * 107.50440 * 9 8 7 12 12 C 1.53778 * 87.08236 * 139.97930 * 11 9 8 13 13 H 1.09003 * 113.61744 * 89.11553 * 12 11 9 14 14 C 1.50704 * 113.69072 * 220.00852 * 12 11 9 15 15 N 1.30497 * 125.64814 * 192.55780 * 14 12 11 16 16 C 1.34134 * 109.25119 * 179.97438 * 15 14 12 17 17 C 1.34667 * 108.02115 * 0.02562 * 16 15 14 18 18 N 1.35044 * 125.64709 * 12.25223 * 14 12 11 19 19 C 1.53780 * 87.08154 * 334.56825 * 12 11 9 20 20 N 1.32488 * 121.56707 * 359.97438 * 7 6 5 21 21 C 1.32281 * 120.74291 * 359.97438 * 20 7 6 22 22 H 0.96705 * 114.00201 * 59.99110 * 1 2 3 23 23 H 1.08990 * 109.47178 * 120.00835 * 2 1 3 24 24 H 1.48500 * 109.99487 * 60.00563 * 3 2 1 25 25 H 1.48500 * 109.99832 * 181.32184 * 3 2 1 26 26 H 1.07992 * 120.40856 * 0.02562 * 5 4 2 27 27 H 0.96994 * 120.00355 * 359.97438 * 8 7 6 28 28 H 1.08997 * 113.61268 * 254.52483 * 11 9 8 29 29 H 1.08997 * 113.61499 * 25.42970 * 11 9 8 30 30 H 1.07999 * 125.98465 * 180.02562 * 16 15 14 31 31 H 1.08003 * 126.58622 * 180.02562 * 17 16 15 32 32 H 0.96994 * 126.40105 * 0.02562 * 18 14 12 33 33 H 1.09007 * 113.61175 * 270.88436 * 19 12 11 34 34 H 1.08995 * 113.61871 * 139.98645 * 19 12 11 35 35 H 1.07993 * 120.40443 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2307 5 6 2.7285 -0.0510 -2.1529 6 7 3.1521 -0.7035 -3.2228 7 6 2.8220 -1.9718 -3.4174 8 7 3.2824 -2.6238 -4.5482 9 6 2.9273 -4.0260 -4.7807 10 1 2.6742 -4.5564 -3.8627 11 6 1.9028 -4.2229 -5.9105 12 6 2.7225 -5.4536 -6.3328 13 1 2.4123 -6.3749 -5.8398 14 6 2.8600 -5.6064 -7.8257 15 7 3.2978 -6.6687 -8.4444 16 6 3.2831 -6.4476 -9.7673 17 6 2.8191 -5.2008 -9.9762 18 7 2.5450 -4.6688 -8.7451 19 6 3.9334 -4.7771 -5.6687 20 7 2.0617 -2.6307 -2.5554 21 6 1.6057 -2.0372 -1.4647 22 1 -0.3934 0.4418 -0.7650 23 1 1.7923 -0.5139 0.8898 24 1 1.5617 2.4677 1.2086 25 1 3.5347 1.7701 -0.0322 26 1 3.0006 0.9828 -2.0000 27 1 3.8394 -2.1522 -5.1870 28 1 0.9017 -4.4662 -5.5546 29 1 1.9074 -3.4210 -6.6487 30 1 3.5897 -7.1470 -10.5310 31 1 2.6841 -4.7158 -10.9317 32 1 2.1929 -3.7828 -8.5665 33 1 4.4931 -4.1266 -6.3408 34 1 4.5716 -5.4678 -5.1176 35 1 0.9867 -2.5796 -0.7655 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14771900_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:33:27 Heat of formation + Delta-G solvation = 121.706011 kcal Electronic energy + Delta-G solvation = -20062.903405 eV Core-core repulsion = 16872.052429 eV Total energy + Delta-G solvation = -3190.850976 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 274.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.10234 -42.10714 -40.09296 -37.97757 -35.64084 -34.71561 -33.46887 -32.28904 -30.44829 -27.07079 -26.80135 -26.03631 -25.29046 -23.22734 -22.58269 -21.65768 -20.79062 -19.47711 -19.03866 -18.62655 -17.82797 -16.73314 -16.52657 -16.39727 -16.05128 -15.88356 -15.61878 -15.45005 -14.93644 -14.67148 -14.55906 -14.13276 -14.02901 -13.66352 -13.54996 -13.15561 -12.45302 -12.22654 -12.09943 -11.89667 -11.82510 -11.69731 -11.21517 -11.04773 -11.02791 -10.55227 -10.03598 -9.36434 -9.10675 -4.99049 0.04414 0.13299 1.08262 1.32873 1.63777 1.78841 1.99370 2.11566 2.20876 2.77767 3.15912 3.28870 3.39405 3.55541 3.60460 3.66648 3.71692 3.76614 3.83858 3.98013 4.24182 4.26397 4.49084 4.54807 4.56804 4.59511 4.65007 4.77372 4.79779 4.89479 4.96659 5.04611 5.15174 5.35940 5.75302 5.78143 6.05232 6.37743 6.47182 6.79481 7.12776 7.26102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.046 4.046 3 Si 0.767 3.233 4 C -0.287 4.287 5 C 0.193 3.807 6 N -0.584 5.584 7 C 0.552 3.448 8 N -0.679 5.679 9 C 0.147 3.853 10 H 0.119 0.881 11 C -0.138 4.138 12 C -0.021 4.021 13 H 0.123 0.877 14 C 0.213 3.787 15 N -0.533 5.533 16 C -0.063 4.063 17 C -0.044 4.044 18 N -0.557 5.557 19 C -0.126 4.126 20 N -0.580 5.580 21 C 0.213 3.787 22 H 0.395 0.605 23 H 0.114 0.886 24 H -0.297 1.297 25 H -0.284 1.284 26 H 0.186 0.814 27 H 0.419 0.581 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.177 0.823 31 H 0.210 0.790 32 H 0.431 0.569 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.097 4.759 -2.082 5.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.158 4.158 3 Si 0.673 3.327 4 C -0.295 4.295 5 C 0.026 3.974 6 N -0.306 5.306 7 C 0.195 3.805 8 N -0.315 5.315 9 C 0.042 3.958 10 H 0.137 0.863 11 C -0.178 4.178 12 C -0.042 4.042 13 H 0.141 0.859 14 C -0.052 4.052 15 N -0.253 5.253 16 C -0.210 4.210 17 C -0.178 4.178 18 N -0.161 5.161 19 C -0.166 4.166 20 N -0.302 5.302 21 C 0.045 3.955 22 H 0.245 0.755 23 H 0.131 0.869 24 H -0.225 1.225 25 H -0.211 1.211 26 H 0.202 0.798 27 H 0.258 0.742 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.195 0.805 31 H 0.226 0.774 32 H 0.271 0.729 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.967 3.595 -1.665 4.079 hybrid contribution -0.238 0.916 0.205 0.968 sum -1.205 4.511 -1.460 4.892 Atomic orbital electron populations 1.86481 1.17125 1.82030 1.50495 1.24770 0.85176 1.09959 0.95870 0.93962 0.77873 0.75340 0.85513 1.21769 1.07440 0.98206 1.02057 1.23144 0.88267 0.99630 0.86325 1.67938 1.28990 1.08813 1.24856 1.19679 0.87383 0.85636 0.87774 1.44200 1.54667 1.11847 1.20801 1.22419 0.95312 0.79924 0.98182 0.86327 1.23548 0.99694 0.96240 0.98295 1.20767 0.98690 1.00126 0.84631 0.85937 1.23155 1.02284 0.85760 0.93999 1.70183 1.21473 1.26512 1.07134 1.22752 1.07678 0.97501 0.93105 1.23284 1.07311 0.96762 0.90436 1.43259 1.49950 1.16627 1.06310 1.23404 0.96457 0.98882 0.97815 1.68009 1.16590 1.39490 1.06133 1.23161 0.90314 0.91147 0.90846 0.75528 0.86899 1.22470 1.21087 0.79777 0.74249 0.89564 0.89097 0.80549 0.77374 0.72855 0.89144 0.89547 0.80030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.83 12.79 -148.98 -1.90 -0.07 16 2 C -0.05 0.18 2.85 71.24 0.20 0.38 16 3 Si 0.77 -3.76 29.87 68.60 2.05 -1.71 16 4 C -0.29 0.53 5.40 -19.69 -0.11 0.42 16 5 C 0.19 -0.17 9.92 84.71 0.84 0.67 16 6 N -0.58 -1.87 10.46 -197.99 -2.07 -3.94 16 7 C 0.55 1.74 8.42 261.49 2.20 3.94 16 8 N -0.68 0.96 5.50 -327.93 -1.80 -0.84 16 9 C 0.15 -0.50 4.25 45.52 0.19 -0.30 16 10 H 0.12 -0.14 7.37 -2.39 -0.02 -0.16 16 11 C -0.14 0.72 7.35 31.12 0.23 0.95 16 12 C -0.02 0.04 4.29 -11.01 -0.05 0.00 16 13 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 14 C 0.21 0.62 7.37 138.13 1.02 1.63 16 15 N -0.53 -5.02 11.25 -188.13 -2.12 -7.14 16 16 C -0.06 -0.33 11.87 83.52 0.99 0.66 16 17 C -0.04 0.04 12.04 83.09 1.00 1.04 16 18 N -0.56 1.13 5.94 -186.27 -1.11 0.03 16 19 C -0.13 0.46 7.38 31.12 0.23 0.69 16 20 N -0.58 -1.91 9.13 -197.99 -1.81 -3.72 16 21 C 0.21 0.06 10.92 84.71 0.93 0.99 16 22 H 0.39 -4.28 8.70 -74.05 -0.64 -4.92 16 23 H 0.11 -0.37 7.96 -2.39 -0.02 -0.39 16 24 H -0.30 -0.89 7.11 99.48 0.71 -0.18 16 25 H -0.28 0.02 7.11 99.48 0.71 0.73 16 26 H 0.19 -1.12 5.04 -2.91 -0.01 -1.13 16 27 H 0.42 -1.57 8.84 -92.71 -0.82 -2.39 16 28 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H 0.09 -0.68 6.65 -2.39 -0.02 -0.69 16 30 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 31 H 0.21 -1.70 8.06 -2.91 -0.02 -1.72 16 32 H 0.43 -3.48 7.54 -92.71 -0.70 -4.18 16 33 H 0.09 -0.36 8.07 -2.38 -0.02 -0.38 16 34 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.18 -0.56 8.06 -2.91 -0.02 -0.58 16 Total: 0.00 -20.89 299.98 -2.05 -22.94 By element: Atomic # 1 Polarization: -15.63 SS G_CDS: -0.96 Total: -16.60 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 7.68 Total: 11.06 kcal Atomic # 7 Polarization: -6.71 SS G_CDS: -8.91 Total: -15.62 kcal Atomic # 8 Polarization: 1.83 SS G_CDS: -1.90 Total: -0.07 kcal Atomic # 14 Polarization: -3.76 SS G_CDS: 2.05 Total: -1.71 kcal Total: -20.89 -2.05 -22.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14771900_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.642 kcal (2) G-P(sol) polarization free energy of solvation -20.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds