Wall clock time and date at job start Mon Mar 8 2021 05:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.46746 * 2 1 4 4 C 1.50693 * 109.47169 * 240.00088 * 2 1 3 5 5 C 1.38844 * 120.33658 * 300.04056 * 4 2 1 6 6 C 1.38342 * 118.50555 * 179.97438 * 5 4 2 7 7 C 1.39095 * 119.09890 * 359.97438 * 6 5 4 8 8 N 1.39003 * 119.70005 * 179.97438 * 7 6 5 9 9 C 1.46500 * 120.00447 * 0.02562 * 8 7 6 10 10 H 1.09002 * 112.84487 * 336.19282 * 9 8 7 11 11 C 1.53774 * 113.61576 * 107.49980 * 9 8 7 12 12 C 1.53782 * 87.08225 * 139.97959 * 11 9 8 13 13 H 1.08998 * 113.61089 * 89.11408 * 12 11 9 14 14 C 1.50700 * 113.61588 * 220.01609 * 12 11 9 15 15 N 1.30502 * 125.65064 * 192.52215 * 14 12 11 16 16 C 1.34122 * 109.25441 * 180.02562 * 15 14 12 17 17 C 1.34668 * 108.02429 * 0.02562 * 16 15 14 18 18 N 1.35039 * 125.64749 * 12.21824 * 14 12 11 19 19 C 1.53779 * 87.08149 * 334.56913 * 12 11 9 20 20 N 1.32422 * 120.59201 * 359.97438 * 7 6 5 21 21 C 1.31944 * 121.62386 * 0.02562 * 20 7 6 22 22 H 0.96699 * 114.00483 * 60.00149 * 1 2 3 23 23 H 1.08999 * 109.47519 * 119.99707 * 2 1 3 24 24 H 1.48506 * 109.99974 * 298.67945 * 3 2 1 25 25 H 1.48494 * 110.00249 * 60.00104 * 3 2 1 26 26 H 1.07994 * 120.74150 * 359.97416 * 5 4 2 27 27 H 1.07998 * 120.44362 * 180.27899 * 6 5 4 28 28 H 0.97005 * 119.99429 * 180.02562 * 8 7 6 29 29 H 1.08999 * 113.61778 * 254.52817 * 11 9 8 30 30 H 1.09005 * 113.62099 * 25.43436 * 11 9 8 31 31 H 1.08001 * 125.98491 * 180.02562 * 16 15 14 32 32 H 1.07994 * 126.59194 * 180.02562 * 17 16 15 33 33 H 0.96992 * 126.40391 * 0.02562 * 18 14 12 34 34 H 1.08999 * 113.60914 * 270.88321 * 19 12 11 35 35 H 1.08993 * 113.61750 * 139.97743 * 19 12 11 36 36 H 1.07996 * 119.57681 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5995 -2.0393 -1.4575 6 6 2.0808 -2.6541 -2.5995 7 6 2.8759 -1.9241 -3.4768 8 7 3.3667 -2.5296 -4.6278 9 6 3.0455 -3.9303 -4.9126 10 1 2.7927 -4.4972 -4.0166 11 6 2.0398 -4.1103 -6.0619 12 6 2.8916 -5.3078 -6.5150 13 1 2.5956 -6.2519 -6.0578 14 6 3.0501 -5.4045 -8.0105 15 7 3.5191 -6.4342 -8.6607 16 6 3.5161 -6.1664 -9.9749 17 6 3.0271 -4.9233 -10.1457 18 7 2.7249 -4.4421 -8.9003 19 6 4.0789 -4.6286 -5.8123 20 7 3.1695 -0.6576 -3.2254 21 6 2.7245 -0.0457 -2.1445 22 1 -0.3934 0.4417 -0.7650 23 1 1.7924 -0.5138 0.8900 24 1 1.5877 2.4586 -1.2243 25 1 1.5614 2.4679 1.2084 26 1 0.9796 -2.5807 -0.7583 27 1 1.8384 -3.6854 -2.8094 28 1 3.9219 -2.0246 -5.2424 29 1 1.0399 -4.3872 -5.7279 30 1 2.0360 -3.2836 -6.7724 31 1 3.8477 -6.8312 -10.7588 32 1 2.8934 -4.4075 -11.0850 33 1 2.3508 -3.5711 -8.6950 34 1 4.6325 -3.9436 -6.4544 35 1 4.7251 -5.3239 -5.2766 36 1 2.9840 0.9884 -1.9724 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14771900_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:33:30 Heat of formation + Delta-G solvation = 104.973006 kcal Electronic energy + Delta-G solvation = -19933.756722 eV Core-core repulsion = 16807.606059 eV Total energy + Delta-G solvation = -3126.150662 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.10671 -41.46214 -39.99776 -37.99991 -35.47407 -33.48146 -33.38496 -31.51811 -30.32977 -26.90182 -26.78997 -25.41308 -24.76662 -22.89917 -22.40014 -21.54816 -20.66666 -19.24726 -18.55215 -18.51267 -17.47327 -16.70456 -16.42365 -16.25261 -15.97081 -15.89722 -15.36274 -15.25176 -14.81984 -14.68027 -14.41615 -14.01305 -13.97615 -13.59749 -13.51319 -13.30835 -12.52429 -12.32279 -12.08881 -12.00686 -11.70471 -11.08679 -11.05543 -11.02738 -10.76401 -10.52877 -10.39163 -9.37023 -8.68896 -4.90907 0.23621 0.41770 1.07619 1.34421 1.60592 1.96818 2.03564 2.11867 2.24165 2.82344 3.31930 3.38980 3.45227 3.58200 3.63824 3.78636 3.79836 3.94287 4.03095 4.12186 4.23278 4.38297 4.46089 4.53971 4.60339 4.62856 4.65411 4.76756 4.78570 4.90372 4.98535 5.02426 5.08585 5.21255 5.35538 5.56145 5.77192 6.04003 6.46100 6.50709 6.54115 7.11802 7.15241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.062 4.062 3 Si 0.754 3.246 4 C -0.234 4.234 5 C -0.013 4.013 6 C -0.240 4.240 7 C 0.395 3.605 8 N -0.707 5.707 9 C 0.139 3.861 10 H 0.130 0.870 11 C -0.144 4.144 12 C -0.023 4.023 13 H 0.127 0.873 14 C 0.212 3.788 15 N -0.533 5.533 16 C -0.063 4.063 17 C -0.046 4.046 18 N -0.558 5.558 19 C -0.127 4.127 20 N -0.565 5.565 21 C 0.145 3.855 22 H 0.384 0.616 23 H 0.126 0.874 24 H -0.285 1.285 25 H -0.302 1.302 26 H 0.146 0.854 27 H 0.154 0.846 28 H 0.406 0.594 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.208 0.792 33 H 0.430 0.570 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 0.978 -0.774 1.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.172 4.172 3 Si 0.660 3.340 4 C -0.239 4.239 5 C -0.038 4.038 6 C -0.264 4.264 7 C 0.159 3.841 8 N -0.338 5.338 9 C 0.034 3.966 10 H 0.147 0.853 11 C -0.184 4.184 12 C -0.044 4.044 13 H 0.145 0.855 14 C -0.052 4.052 15 N -0.253 5.253 16 C -0.210 4.210 17 C -0.181 4.181 18 N -0.163 5.163 19 C -0.166 4.166 20 N -0.283 5.283 21 C -0.012 4.012 22 H 0.233 0.767 23 H 0.143 0.857 24 H -0.211 1.211 25 H -0.230 1.230 26 H 0.163 0.837 27 H 0.172 0.828 28 H 0.243 0.757 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.194 0.806 32 H 0.224 0.776 33 H 0.271 0.729 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.688 0.976 -0.535 1.309 hybrid contribution -1.732 0.705 -0.825 2.044 sum -1.044 1.681 -1.359 2.401 Atomic orbital electron populations 1.86563 1.18703 1.80253 1.50142 1.24875 0.83136 1.10961 0.98245 0.94254 0.90564 0.72717 0.76437 1.20966 1.05834 0.96794 1.00317 1.21410 0.93876 0.93278 0.95266 1.21704 1.04987 1.02631 0.97100 1.18674 0.89556 0.88405 0.87446 1.44563 1.55540 1.11748 1.21965 1.22551 0.95595 0.80733 0.97759 0.85282 1.23627 0.99849 0.96561 0.98344 1.20844 0.98766 1.00691 0.84109 0.85479 1.23262 1.01817 0.85572 0.94575 1.70183 1.21418 1.27458 1.06220 1.22743 1.07455 0.97166 0.93597 1.23271 1.07120 0.97665 0.89995 1.43275 1.49225 1.17214 1.06563 1.23374 0.96535 0.99194 0.97506 1.67153 1.28235 1.10022 1.22886 1.22440 0.91667 0.99277 0.87813 0.76651 0.85666 1.21136 1.22977 0.83651 0.82849 0.75747 0.88903 0.89565 0.80580 0.77562 0.72933 0.89765 0.89228 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.81 12.78 -148.98 -1.90 -2.72 16 2 C -0.06 0.09 2.84 71.23 0.20 0.29 16 3 Si 0.75 -1.50 29.82 68.60 2.05 0.54 16 4 C -0.23 0.06 5.40 -19.76 -0.11 -0.05 16 5 C -0.01 0.01 9.76 22.44 0.22 0.23 16 6 C -0.24 0.38 9.28 22.50 0.21 0.58 16 7 C 0.39 0.34 7.65 133.05 1.02 1.36 16 8 N -0.71 2.54 5.53 -322.07 -1.78 0.76 16 9 C 0.14 -1.04 4.03 45.52 0.18 -0.85 16 10 H 0.13 -1.23 6.10 -2.39 -0.01 -1.25 16 11 C -0.14 1.15 7.35 31.12 0.23 1.38 16 12 C -0.02 0.10 4.29 -11.01 -0.05 0.06 16 13 H 0.13 -0.61 8.14 -2.39 -0.02 -0.63 16 14 C 0.21 0.41 7.36 138.13 1.02 1.43 16 15 N -0.53 -4.60 11.25 -188.14 -2.12 -6.71 16 16 C -0.06 -0.31 11.87 83.52 0.99 0.68 16 17 C -0.05 0.04 12.04 83.09 1.00 1.04 16 18 N -0.56 1.30 5.94 -186.27 -1.11 0.19 16 19 C -0.13 0.74 7.38 31.12 0.23 0.97 16 20 N -0.57 -2.26 10.39 -193.26 -2.01 -4.27 16 21 C 0.14 0.19 9.84 84.64 0.83 1.02 16 22 H 0.38 -1.38 8.70 -74.06 -0.64 -2.02 16 23 H 0.13 -0.40 7.96 -2.39 -0.02 -0.42 16 24 H -0.28 -0.63 7.11 99.48 0.71 0.08 16 25 H -0.30 -1.72 7.11 99.48 0.71 -1.02 16 26 H 0.15 -0.46 8.06 -2.91 -0.02 -0.48 16 27 H 0.15 -0.97 6.04 -2.91 -0.02 -0.99 16 28 H 0.41 -1.53 8.85 -92.70 -0.82 -2.35 16 29 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 30 H 0.09 -0.74 6.64 -2.38 -0.02 -0.76 16 31 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 32 H 0.21 -1.63 8.06 -2.91 -0.02 -1.66 16 33 H 0.43 -3.49 7.53 -92.71 -0.70 -4.19 16 34 H 0.08 -0.39 8.07 -2.39 -0.02 -0.41 16 35 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.17 -0.38 4.88 -2.91 -0.01 -0.39 16 Total: 0.00 -19.77 302.38 -1.87 -21.64 By element: Atomic # 1 Polarization: -16.60 SS G_CDS: -0.98 Total: -17.57 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 5.98 Total: 8.14 kcal Atomic # 7 Polarization: -3.02 SS G_CDS: -7.01 Total: -10.03 kcal Atomic # 8 Polarization: -0.81 SS G_CDS: -1.90 Total: -2.72 kcal Atomic # 14 Polarization: -1.50 SS G_CDS: 2.05 Total: 0.54 kcal Total: -19.77 -1.87 -21.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14771900_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.618 kcal (2) G-P(sol) polarization free energy of solvation -19.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds