Wall clock time and date at job start Mon Mar 8 2021 05:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50694 * 109.47118 * 120.00721 * 2 1 3 5 5 C 1.33319 * 125.95672 * 64.99779 * 4 2 1 6 6 N 1.32122 * 114.58209 * 179.97438 * 5 4 2 7 7 C 1.29686 * 116.86713 * 359.97438 * 6 5 4 8 8 N 1.38611 * 124.94952 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99839 * 359.97438 * 8 7 6 10 10 H 1.08996 * 112.84983 * 336.19751 * 9 8 7 11 11 C 1.53778 * 113.61324 * 107.50500 * 9 8 7 12 12 C 1.53783 * 87.08393 * 139.97893 * 11 9 8 13 13 H 1.08993 * 113.61205 * 89.11316 * 12 11 9 14 14 C 1.50695 * 113.69300 * 220.00906 * 12 11 9 15 15 N 1.30502 * 125.65341 * 192.22418 * 14 12 11 16 16 C 1.34124 * 109.25687 * 179.89436 * 15 14 12 17 17 C 1.34668 * 108.02404 * 0.37200 * 16 15 14 18 18 N 1.35044 * 125.64873 * 12.53272 * 14 12 11 19 19 C 1.53784 * 113.61028 * 205.00265 * 9 8 7 20 20 S 1.70973 * 110.09880 * 359.72571 * 7 6 5 21 21 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 22 22 H 1.09004 * 109.46690 * 240.00803 * 2 1 3 23 23 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 24 24 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 25 25 H 1.08008 * 122.71023 * 359.97438 * 5 4 2 26 26 H 0.97000 * 119.99705 * 179.97438 * 8 7 6 27 27 H 1.09002 * 113.61723 * 254.52571 * 11 9 8 28 28 H 1.08999 * 113.61593 * 25.42760 * 11 9 8 29 29 H 1.08004 * 125.98687 * 180.11658 * 16 15 14 30 30 H 1.08003 * 126.59470 * 179.82155 * 17 16 15 31 31 H 0.96996 * 126.40079 * 359.97438 * 18 14 12 32 32 H 1.08999 * 113.61341 * 334.56172 * 19 9 8 33 33 H 1.08996 * 113.61369 * 105.38883 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 1.7622 -2.0026 1.5120 6 7 2.2983 -2.3906 2.6555 7 6 2.9126 -1.4853 3.3519 8 7 3.5332 -1.7069 4.5713 9 6 3.5245 -3.0462 5.1649 10 1 2.6976 -3.6611 4.8099 11 6 4.8889 -3.7535 5.1092 12 6 4.5922 -4.2672 6.5280 13 1 4.0581 -5.2171 6.5456 14 6 5.7917 -4.2534 7.4402 15 7 5.8685 -4.8374 8.6047 16 6 7.0822 -4.6165 9.1311 17 6 7.7814 -3.8602 8.2635 18 7 6.9632 -3.6297 7.1906 19 6 3.6770 -3.0427 6.6952 20 16 2.8525 0.0196 2.5426 21 1 -0.3934 0.4418 -0.7650 22 1 1.7923 -0.5137 -0.8901 23 1 1.5616 2.4678 1.2086 24 1 3.5346 1.7703 -0.0322 25 1 1.2300 -2.6777 0.8581 26 1 3.9733 -0.9751 5.0315 27 1 4.9407 -4.5440 4.3606 28 1 5.7347 -3.0676 5.0612 29 1 7.4353 -4.9779 10.0857 30 1 8.7934 -3.5047 8.3895 31 1 7.1836 -3.1143 6.3989 32 1 4.1915 -2.1625 7.0806 33 1 2.7501 -3.2579 7.2268 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14771900_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:33:34 Heat of formation + Delta-G solvation = 113.542206 kcal Electronic energy + Delta-G solvation = -18543.123621 eV Core-core repulsion = 15506.496793 eV Total energy + Delta-G solvation = -3036.626828 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.11372 -40.94451 -39.93445 -37.81996 -35.52861 -33.44427 -31.56900 -30.51207 -27.13915 -26.92957 -25.93331 -24.29288 -22.74894 -21.87660 -21.03597 -20.69890 -19.40039 -18.98860 -18.48612 -17.64302 -16.77705 -16.58221 -15.92670 -15.91434 -15.64580 -15.39177 -14.95834 -14.77415 -14.55790 -14.28567 -14.13200 -13.78083 -13.71820 -12.90687 -12.56302 -12.42231 -12.22526 -12.07625 -11.88869 -11.18365 -10.98887 -10.96880 -10.67153 -10.33832 -10.19106 -9.36385 -8.80800 -5.24245 -0.09374 0.05229 0.62250 1.05209 1.19869 1.54622 1.89334 1.96536 1.99828 2.13107 2.17574 3.17051 3.23938 3.41287 3.44677 3.61071 3.67928 3.83338 3.95522 4.09253 4.34949 4.37562 4.43327 4.46745 4.51675 4.65428 4.72195 4.74777 4.80802 4.93689 5.11569 5.19914 5.76099 5.78757 5.95153 6.34057 6.56596 6.94001 7.14079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.017 4.017 3 Si 0.668 3.332 4 C -0.259 4.259 5 C 0.123 3.877 6 N -0.545 5.545 7 C 0.329 3.671 8 N -0.682 5.682 9 C 0.143 3.857 10 H 0.126 0.874 11 C -0.151 4.151 12 C -0.021 4.021 13 H 0.126 0.874 14 C 0.220 3.780 15 N -0.485 5.485 16 C -0.026 4.026 17 C -0.057 4.057 18 N -0.566 5.566 19 C -0.134 4.134 20 S 0.068 5.932 21 H 0.383 0.617 22 H 0.082 0.918 23 H -0.238 1.238 24 H -0.243 1.243 25 H 0.179 0.821 26 H 0.414 0.586 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.172 0.828 30 H 0.178 0.822 31 H 0.416 0.584 32 H 0.087 0.913 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 3.536 -4.092 5.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.131 4.131 3 Si 0.568 3.432 4 C -0.381 4.381 5 C -0.027 4.027 6 N -0.270 5.270 7 C -0.041 4.041 8 N -0.321 5.321 9 C 0.036 3.964 10 H 0.144 0.856 11 C -0.191 4.191 12 C -0.042 4.042 13 H 0.144 0.856 14 C -0.044 4.044 15 N -0.204 5.204 16 C -0.174 4.174 17 C -0.190 4.190 18 N -0.170 5.170 19 C -0.174 4.174 20 S 0.317 5.683 21 H 0.231 0.769 22 H 0.100 0.900 23 H -0.162 1.162 24 H -0.167 1.167 25 H 0.196 0.804 26 H 0.251 0.749 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.189 0.811 30 H 0.195 0.805 31 H 0.255 0.745 32 H 0.105 0.895 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.200 3.640 -2.194 4.786 hybrid contribution 0.768 -0.072 -0.809 1.118 sum 2.968 3.567 -3.004 5.528 Atomic orbital electron populations 1.86526 1.17142 1.81739 1.49768 1.23681 0.85506 1.09290 0.94642 0.95122 0.81706 0.78159 0.88225 1.24282 1.14505 0.96837 1.02525 1.21361 0.96292 0.93043 0.92045 1.66452 1.18840 1.33100 1.08611 1.23839 0.95305 0.92935 0.92032 1.44066 1.58948 1.11739 1.17322 1.22555 0.98401 0.83053 0.92389 0.85590 1.23629 0.98425 1.00718 0.96376 1.20739 0.91179 1.00657 0.91584 0.85570 1.22851 0.88587 0.97852 0.95138 1.70252 1.20738 1.22446 1.07011 1.22429 0.90926 1.02653 1.01393 1.22826 0.98770 1.07330 0.90094 1.43271 1.12983 1.42117 1.18625 1.23471 1.00742 0.97729 0.95422 1.84125 1.55462 1.12515 1.16192 0.76892 0.89987 1.16221 1.16748 0.80393 0.74885 0.89470 0.90248 0.81113 0.80469 0.74529 0.89487 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.01 12.86 -35.23 -0.45 -0.47 16 2 C -0.02 0.00 2.98 36.00 0.11 0.11 16 3 Si 0.67 -0.64 31.06 -169.99 -5.28 -5.92 16 4 C -0.26 -0.63 5.76 -36.03 -0.21 -0.84 16 5 C 0.12 0.35 11.24 -19.14 -0.22 0.14 16 6 N -0.54 -1.92 9.83 -15.20 -0.15 -2.07 16 7 C 0.33 0.68 8.09 -87.68 -0.71 -0.02 16 8 N -0.68 0.45 5.51 -54.99 -0.30 0.15 16 9 C 0.14 -0.19 4.36 -67.12 -0.29 -0.48 16 10 H 0.13 0.00 7.66 -51.93 -0.40 -0.40 16 11 C -0.15 0.31 7.36 -25.92 -0.19 0.12 16 12 C -0.02 0.02 4.29 -90.95 -0.39 -0.37 16 13 H 0.13 -0.12 8.14 -51.93 -0.42 -0.54 16 14 C 0.22 0.32 7.37 -155.42 -1.14 -0.83 16 15 N -0.49 -2.08 11.25 -10.82 -0.12 -2.20 16 16 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 17 C -0.06 0.00 12.04 -16.56 -0.20 -0.20 16 18 N -0.57 0.32 5.94 -10.23 -0.06 0.26 16 19 C -0.13 0.23 7.38 -25.91 -0.19 0.04 16 20 S 0.07 0.14 20.59 -107.50 -2.21 -2.07 16 21 H 0.38 -1.98 8.74 45.56 0.40 -1.58 16 22 H 0.08 -0.17 7.96 -51.93 -0.41 -0.59 16 23 H -0.24 -0.54 7.11 56.52 0.40 -0.14 16 24 H -0.24 -0.33 7.11 56.52 0.40 0.07 16 25 H 0.18 0.19 8.06 -52.48 -0.42 -0.23 16 26 H 0.41 -1.09 8.85 -40.82 -0.36 -1.45 16 27 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 28 H 0.08 -0.24 6.65 -51.93 -0.35 -0.59 16 29 H 0.17 0.07 8.06 -52.48 -0.42 -0.35 16 30 H 0.18 -0.54 8.06 -52.48 -0.42 -0.96 16 31 H 0.42 -1.38 7.54 -40.82 -0.31 -1.69 16 32 H 0.09 -0.17 8.07 -51.93 -0.42 -0.59 16 33 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 LS Contribution 298.04 15.07 4.49 4.49 Total: 0.00 -9.27 298.04 -11.32 -20.59 By element: Atomic # 1 Polarization: -6.58 SS G_CDS: -3.58 Total: -10.16 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -3.64 Total: -2.60 kcal Atomic # 7 Polarization: -3.23 SS G_CDS: -0.64 Total: -3.86 kcal Atomic # 8 Polarization: -0.01 SS G_CDS: -0.45 Total: -0.47 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: -5.28 Total: -5.92 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.21 Total: -2.07 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -9.27 -11.32 -20.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14771900_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.131 kcal (2) G-P(sol) polarization free energy of solvation -9.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds