Wall clock time and date at job start Mon Mar 8 2021 05:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50694 * 109.47118 * 120.00721 * 2 1 3 5 5 C 1.33319 * 125.95672 * 64.99779 * 4 2 1 6 6 N 1.32122 * 114.58209 * 179.97438 * 5 4 2 7 7 C 1.29686 * 116.86713 * 359.97438 * 6 5 4 8 8 N 1.38611 * 124.94952 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99839 * 359.97438 * 8 7 6 10 10 H 1.08996 * 112.84983 * 336.19751 * 9 8 7 11 11 C 1.53778 * 113.61324 * 107.50500 * 9 8 7 12 12 C 1.53783 * 87.08393 * 139.97893 * 11 9 8 13 13 H 1.08993 * 113.61205 * 89.11316 * 12 11 9 14 14 C 1.50695 * 113.69300 * 220.00906 * 12 11 9 15 15 N 1.30502 * 125.65341 * 192.22418 * 14 12 11 16 16 C 1.34124 * 109.25687 * 179.89436 * 15 14 12 17 17 C 1.34668 * 108.02404 * 0.37200 * 16 15 14 18 18 N 1.35044 * 125.64873 * 12.53272 * 14 12 11 19 19 C 1.53784 * 113.61028 * 205.00265 * 9 8 7 20 20 S 1.70973 * 110.09880 * 359.72571 * 7 6 5 21 21 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 22 22 H 1.09004 * 109.46690 * 240.00803 * 2 1 3 23 23 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 24 24 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 25 25 H 1.08008 * 122.71023 * 359.97438 * 5 4 2 26 26 H 0.97000 * 119.99705 * 179.97438 * 8 7 6 27 27 H 1.09002 * 113.61723 * 254.52571 * 11 9 8 28 28 H 1.08999 * 113.61593 * 25.42760 * 11 9 8 29 29 H 1.08004 * 125.98687 * 180.11658 * 16 15 14 30 30 H 1.08003 * 126.59470 * 179.82155 * 17 16 15 31 31 H 0.96996 * 126.40079 * 359.97438 * 18 14 12 32 32 H 1.08999 * 113.61341 * 334.56172 * 19 9 8 33 33 H 1.08996 * 113.61369 * 105.38883 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 1.7622 -2.0026 1.5120 6 7 2.2983 -2.3906 2.6555 7 6 2.9126 -1.4853 3.3519 8 7 3.5332 -1.7069 4.5713 9 6 3.5245 -3.0462 5.1649 10 1 2.6976 -3.6611 4.8099 11 6 4.8889 -3.7535 5.1092 12 6 4.5922 -4.2672 6.5280 13 1 4.0581 -5.2171 6.5456 14 6 5.7917 -4.2534 7.4402 15 7 5.8685 -4.8374 8.6047 16 6 7.0822 -4.6165 9.1311 17 6 7.7814 -3.8602 8.2635 18 7 6.9632 -3.6297 7.1906 19 6 3.6770 -3.0427 6.6952 20 16 2.8525 0.0196 2.5426 21 1 -0.3934 0.4418 -0.7650 22 1 1.7923 -0.5137 -0.8901 23 1 1.5616 2.4678 1.2086 24 1 3.5346 1.7703 -0.0322 25 1 1.2300 -2.6777 0.8581 26 1 3.9733 -0.9751 5.0315 27 1 4.9407 -4.5440 4.3606 28 1 5.7347 -3.0676 5.0612 29 1 7.4353 -4.9779 10.0857 30 1 8.7934 -3.5047 8.3895 31 1 7.1836 -3.1143 6.3989 32 1 4.1915 -2.1625 7.0806 33 1 2.7501 -3.2579 7.2268 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14771900_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:33:33 Heat of formation + Delta-G solvation = 112.543585 kcal Electronic energy + Delta-G solvation = -18543.166924 eV Core-core repulsion = 15506.496793 eV Total energy + Delta-G solvation = -3036.670131 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.13779 -41.00561 -39.93166 -37.77028 -35.54281 -33.50282 -31.61819 -30.53357 -27.15211 -26.84065 -25.95322 -24.35320 -22.76278 -21.92161 -21.02243 -20.75383 -19.43590 -18.97474 -18.42263 -17.68917 -16.75906 -16.54414 -15.99787 -15.95621 -15.68487 -15.41368 -14.96573 -14.80845 -14.59780 -14.32346 -14.11168 -13.72431 -13.61002 -12.93494 -12.61424 -12.42662 -12.17480 -12.12309 -11.83190 -11.18572 -11.08478 -11.05689 -10.78824 -10.41599 -10.23223 -9.39577 -8.87143 -5.18720 -0.20811 -0.05349 0.50645 1.04603 1.23988 1.56734 1.84655 1.91919 1.99517 2.08883 2.18810 3.23240 3.29719 3.48756 3.54740 3.64399 3.72414 3.91197 3.98198 4.20387 4.43533 4.47665 4.50062 4.52867 4.58830 4.63731 4.71779 4.81267 4.90091 4.93259 5.08261 5.21646 5.73239 5.74924 6.00800 6.43417 6.83834 6.92629 7.09435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.024 4.024 3 Si 0.755 3.245 4 C -0.273 4.273 5 C 0.110 3.890 6 N -0.568 5.568 7 C 0.328 3.672 8 N -0.672 5.672 9 C 0.145 3.855 10 H 0.113 0.887 11 C -0.139 4.139 12 C -0.021 4.021 13 H 0.122 0.878 14 C 0.212 3.788 15 N -0.532 5.532 16 C -0.063 4.063 17 C -0.043 4.043 18 N -0.557 5.557 19 C -0.124 4.124 20 S 0.052 5.948 21 H 0.405 0.595 22 H 0.107 0.893 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.190 0.810 26 H 0.423 0.577 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.178 0.822 30 H 0.210 0.790 31 H 0.430 0.570 32 H 0.093 0.907 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.454 4.107 -4.999 6.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.137 4.137 3 Si 0.659 3.341 4 C -0.395 4.395 5 C -0.040 4.040 6 N -0.294 5.294 7 C -0.043 4.043 8 N -0.311 5.311 9 C 0.037 3.963 10 H 0.131 0.869 11 C -0.179 4.179 12 C -0.042 4.042 13 H 0.140 0.860 14 C -0.052 4.052 15 N -0.252 5.252 16 C -0.210 4.210 17 C -0.177 4.177 18 N -0.162 5.162 19 C -0.164 4.164 20 S 0.300 5.700 21 H 0.256 0.744 22 H 0.124 0.876 23 H -0.212 1.212 24 H -0.201 1.201 25 H 0.207 0.793 26 H 0.263 0.737 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.195 0.805 30 H 0.227 0.773 31 H 0.271 0.729 32 H 0.112 0.888 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.760 4.215 -3.132 5.933 hybrid contribution 0.604 -0.230 -0.477 0.803 sum 3.365 3.986 -3.608 6.343 Atomic orbital electron populations 1.86472 1.17106 1.82329 1.51519 1.23845 0.85697 1.09685 0.94445 0.94178 0.78487 0.75827 0.85598 1.24649 1.14569 0.96999 1.03299 1.21609 0.96564 0.93567 0.92216 1.66466 1.19836 1.33829 1.09300 1.24007 0.95097 0.92628 0.92556 1.44142 1.58168 1.12348 1.16441 1.22491 0.98559 0.82667 0.92549 0.86880 1.23566 0.98302 1.00592 0.95412 1.20748 0.90709 1.00823 0.91880 0.86004 1.23112 0.89586 0.97726 0.94807 1.70181 1.22184 1.24186 1.08654 1.22759 0.91147 1.04405 1.02657 1.23293 0.99610 1.05629 0.89208 1.43259 1.12279 1.41632 1.19003 1.23408 1.00494 0.97601 0.94888 1.84146 1.55978 1.12998 1.16863 0.74351 0.87557 1.21206 1.20082 0.79311 0.73716 0.89703 0.88799 0.80493 0.77334 0.72872 0.88807 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.40 12.86 -148.98 -1.92 -1.52 16 2 C -0.02 0.02 2.98 71.23 0.21 0.23 16 3 Si 0.75 -1.49 31.06 68.60 2.13 0.64 16 4 C -0.27 -1.40 5.76 24.57 0.14 -1.26 16 5 C 0.11 0.68 11.24 83.54 0.94 1.61 16 6 N -0.57 -4.36 9.83 -202.02 -1.99 -6.35 16 7 C 0.33 1.51 8.09 179.32 1.45 2.97 16 8 N -0.67 0.88 5.51 -327.90 -1.81 -0.93 16 9 C 0.14 -0.35 4.36 45.52 0.20 -0.15 16 10 H 0.11 0.09 7.66 -2.39 -0.02 0.07 16 11 C -0.14 0.62 7.36 31.12 0.23 0.85 16 12 C -0.02 0.03 4.29 -11.01 -0.05 -0.01 16 13 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 14 C 0.21 0.66 7.37 138.13 1.02 1.67 16 15 N -0.53 -5.09 11.25 -188.14 -2.12 -7.21 16 16 C -0.06 -0.33 11.87 83.52 0.99 0.66 16 17 C -0.04 0.03 12.04 83.09 1.00 1.03 16 18 N -0.56 1.10 5.94 -186.27 -1.11 -0.01 16 19 C -0.12 0.42 7.38 31.13 0.23 0.65 16 20 S 0.05 0.25 20.59 -56.49 -1.16 -0.91 16 21 H 0.40 -4.70 8.74 -74.05 -0.65 -5.35 16 22 H 0.11 -0.62 7.96 -2.38 -0.02 -0.63 16 23 H -0.29 -1.63 7.11 99.48 0.71 -0.93 16 24 H -0.27 -0.84 7.11 99.48 0.71 -0.13 16 25 H 0.19 0.46 8.06 -2.91 -0.02 0.44 16 26 H 0.42 -2.38 8.85 -92.71 -0.82 -3.20 16 27 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.09 -0.69 6.65 -2.39 -0.02 -0.71 16 29 H 0.18 0.35 8.06 -2.91 -0.02 0.32 16 30 H 0.21 -1.70 8.06 -2.91 -0.02 -1.73 16 31 H 0.43 -3.50 7.54 -92.71 -0.70 -4.19 16 32 H 0.09 -0.42 8.07 -2.39 -0.02 -0.44 16 33 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 Total: 0.00 -22.61 298.04 -2.56 -25.17 By element: Atomic # 1 Polarization: -16.19 SS G_CDS: -0.95 Total: -17.15 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 6.36 Total: 8.25 kcal Atomic # 7 Polarization: -7.47 SS G_CDS: -7.02 Total: -14.49 kcal Atomic # 8 Polarization: 0.40 SS G_CDS: -1.92 Total: -1.52 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: 2.13 Total: 0.64 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -1.16 Total: -0.91 kcal Total: -22.61 -2.56 -25.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14771900_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.710 kcal (2) G-P(sol) polarization free energy of solvation -22.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds