Wall clock time and date at job start Mon Mar 8 2021 05:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33328 * 125.94966 * 2 1 4 4 C 1.50697 * 122.71308 * 359.96789 * 3 2 1 5 5 O 1.42898 * 109.47317 * 113.27664 * 4 3 2 6 6 Si 1.86306 * 109.47277 * 233.27926 * 4 3 2 7 7 N 1.32126 * 114.58091 * 179.69349 * 3 2 1 8 8 C 1.29686 * 116.86421 * 0.27141 * 7 3 2 9 9 N 1.38608 * 124.95127 * 179.97438 * 8 7 3 10 10 C 1.46499 * 120.00191 * 179.97438 * 9 8 7 11 11 H 1.09004 * 112.84922 * 25.33897 * 10 9 8 12 12 C 1.53786 * 113.61461 * 156.53238 * 10 9 8 13 13 C 1.53776 * 87.07904 * 139.98246 * 12 10 9 14 14 H 1.09002 * 113.61207 * 89.20634 * 13 12 10 15 15 C 1.50701 * 113.61220 * 220.01842 * 13 12 10 16 16 N 1.30499 * 125.64951 * 264.69235 * 15 13 12 17 17 C 1.34132 * 109.25619 * 179.89229 * 16 15 13 18 18 C 1.34667 * 108.01833 * 0.37708 * 17 16 15 19 19 N 1.35047 * 125.64958 * 85.00636 * 15 13 12 20 20 C 1.53777 * 113.61508 * 254.14057 * 10 9 8 21 21 S 1.70971 * 110.10103 * 359.97438 * 8 7 3 22 22 H 1.09001 * 109.46651 * 84.91570 * 1 2 3 23 23 H 1.09001 * 109.46679 * 204.90915 * 1 2 3 24 24 H 1.09000 * 109.47158 * 324.91454 * 1 2 3 25 25 H 1.09005 * 109.46984 * 353.27862 * 4 3 2 26 26 H 0.96705 * 114.00308 * 179.97438 * 5 4 3 27 27 H 1.48498 * 109.99663 * 299.99851 * 6 4 3 28 28 H 1.48505 * 109.99559 * 61.31741 * 6 4 3 29 29 H 0.97004 * 119.99809 * 0.02562 * 9 8 7 30 30 H 1.08997 * 113.61306 * 254.53848 * 12 10 9 31 31 H 1.09000 * 113.61333 * 25.43396 * 12 10 9 32 32 H 1.08005 * 125.98950 * 180.11624 * 17 16 15 33 33 H 1.08000 * 126.58746 * 179.74742 * 18 17 16 34 34 H 0.96998 * 126.39471 * 359.97438 * 19 15 13 35 35 H 1.08997 * 113.61929 * 334.56395 * 20 10 9 36 36 H 1.08994 * 113.61437 * 105.47482 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 -0.0007 5 8 2.0634 3.1208 1.2368 6 14 2.4943 3.4432 -1.4086 7 7 3.5850 0.8189 0.0064 8 6 3.9315 -0.4308 0.0064 9 7 5.2384 -0.8925 0.0121 10 6 5.5066 -2.3327 0.0119 11 1 4.6936 -2.9146 -0.4224 12 6 6.8927 -2.7012 -0.5431 13 6 6.9759 -3.7501 0.5784 14 1 6.5661 -4.7209 0.2995 15 6 8.3401 -3.8506 1.2108 16 7 9.2694 -4.7060 0.8827 17 6 10.3491 -4.5030 1.6522 18 6 10.0755 -3.4885 2.4945 19 7 8.8012 -3.0742 2.2150 20 6 5.9915 -2.8692 1.3691 21 16 2.5413 -1.4260 -0.0017 22 1 -0.3633 0.0911 -1.0237 23 1 -0.3633 -0.9321 0.4328 24 1 -0.3633 0.8409 0.5907 25 1 0.6586 2.4500 -0.1215 26 1 1.7410 4.0299 1.3064 27 1 3.9704 3.4954 -1.2556 28 1 2.1400 2.8079 -2.7033 29 1 5.9755 -0.2619 0.0169 30 1 6.8617 -3.1330 -1.5434 31 1 7.6275 -1.9017 -0.4486 32 1 11.2741 -5.0588 1.6073 33 1 10.7348 -3.0805 3.2464 34 1 8.3193 -2.3571 2.6559 35 1 6.4796 -2.1158 1.9873 36 1 5.2343 -3.4364 1.9101 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14771900_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:33:36 Heat of formation + Delta-G solvation = 105.375914 kcal Electronic energy + Delta-G solvation = -20505.754602 eV Core-core repulsion = 17313.236038 eV Total energy + Delta-G solvation = -3192.518564 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.15441 -41.16724 -40.23483 -37.59071 -35.76162 -33.52021 -33.03043 -30.63516 -29.12384 -26.95744 -26.32759 -25.59533 -24.26602 -22.80520 -21.87770 -21.15177 -19.99951 -19.49533 -18.87041 -18.35446 -17.60340 -16.75487 -16.56177 -16.22448 -15.88822 -15.65575 -15.35883 -15.01682 -14.74549 -14.38761 -14.31081 -14.15328 -14.07527 -13.68110 -13.59509 -13.51239 -13.03962 -12.53341 -12.36850 -12.16440 -12.01119 -11.77408 -11.12599 -11.09741 -11.06999 -10.74112 -10.41395 -10.12023 -9.41585 -8.77420 -5.05802 -0.16684 0.03597 0.59193 1.02806 1.22508 1.57351 1.74389 1.80745 2.06665 2.12533 2.16024 3.15670 3.25829 3.40554 3.42697 3.64805 3.70125 3.81167 3.99992 4.14090 4.17867 4.30518 4.39121 4.47964 4.48967 4.52254 4.66747 4.70677 4.76932 4.81468 4.85344 4.88515 5.01286 5.12127 5.19681 5.55714 5.73374 6.15767 6.40810 6.80071 6.92715 7.07096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.255 4.255 3 C 0.078 3.922 4 C -0.039 4.039 5 O -0.560 6.560 6 Si 0.797 3.203 7 N -0.576 5.576 8 C 0.297 3.703 9 N -0.679 5.679 10 C 0.131 3.869 11 H 0.121 0.879 12 C -0.123 4.123 13 C -0.019 4.019 14 H 0.131 0.869 15 C 0.211 3.789 16 N -0.529 5.529 17 C -0.062 4.062 18 C -0.045 4.045 19 N -0.559 5.559 20 C -0.143 4.143 21 S 0.140 5.860 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.404 0.596 27 H -0.312 1.312 28 H -0.303 1.303 29 H 0.412 0.588 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.179 0.821 33 H 0.208 0.792 34 H 0.430 0.570 35 H 0.090 0.910 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 2.248 1.808 5.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.378 4.378 3 C -0.051 4.051 4 C -0.151 4.151 5 O -0.370 6.370 6 Si 0.704 3.296 7 N -0.303 5.303 8 C -0.074 4.074 9 N -0.319 5.319 10 C 0.026 3.974 11 H 0.139 0.861 12 C -0.162 4.162 13 C -0.040 4.040 14 H 0.149 0.851 15 C -0.054 4.054 16 N -0.249 5.249 17 C -0.208 4.208 18 C -0.179 4.179 19 N -0.163 5.163 20 C -0.183 4.183 21 S 0.389 5.611 22 H 0.104 0.896 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.127 0.873 26 H 0.256 0.744 27 H -0.240 1.240 28 H -0.231 1.231 29 H 0.251 0.749 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.196 0.804 33 H 0.225 0.775 34 H 0.270 0.730 35 H 0.109 0.891 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.144 0.166 0.642 3.213 hybrid contribution 0.558 1.336 0.986 1.752 sum -2.586 1.503 1.628 3.405 Atomic orbital electron populations 1.20337 0.84603 1.04386 1.03842 1.25632 1.02811 0.93250 1.16143 1.19438 0.86672 0.96303 1.02684 1.24367 1.03508 0.90556 0.96630 1.86472 1.82014 1.33292 1.35206 0.95293 0.77407 0.84523 0.72380 1.66132 1.18663 1.17936 1.27551 1.23701 0.93255 0.91620 0.98818 1.44093 1.00997 1.07268 1.79514 1.22710 0.98512 0.78536 0.97627 0.86106 1.23362 0.95096 0.98004 0.99741 1.20820 0.86407 1.00684 0.96056 0.85100 1.23150 0.97810 0.92041 0.92369 1.70181 1.01950 1.24839 1.27978 1.22758 0.99217 1.01205 0.97665 1.23290 0.87680 1.01460 1.05458 1.43287 1.13718 1.29970 1.29350 1.23674 0.98808 0.98701 0.97133 1.83629 0.95166 1.08989 1.73330 0.89557 0.90182 0.89058 0.87320 0.74447 1.24047 1.23082 0.74940 0.88728 0.89302 0.80429 0.77496 0.72972 0.89143 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.16 9.71 71.24 0.69 0.86 16 2 C -0.25 -1.21 6.57 24.57 0.16 -1.05 16 3 C 0.08 0.68 5.22 41.40 0.22 0.90 16 4 C -0.04 -0.11 2.82 71.23 0.20 0.10 16 5 O -0.56 -1.76 12.86 -148.98 -1.92 -3.68 16 6 Si 0.80 2.27 32.62 68.60 2.24 4.50 16 7 N -0.58 -6.86 9.77 -189.86 -1.85 -8.72 16 8 C 0.30 1.94 8.24 179.32 1.48 3.42 16 9 N -0.68 -0.57 5.52 -327.89 -1.81 -2.37 16 10 C 0.13 -0.56 4.20 45.52 0.19 -0.37 16 11 H 0.12 -0.66 7.11 -2.38 -0.02 -0.68 16 12 C -0.12 0.51 7.38 31.12 0.23 0.74 16 13 C -0.02 0.06 4.29 -10.96 -0.05 0.01 16 14 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 15 C 0.21 0.56 7.36 138.13 1.02 1.58 16 16 N -0.53 -4.79 11.25 -188.12 -2.12 -6.90 16 17 C -0.06 -0.32 11.87 83.52 0.99 0.67 16 18 C -0.04 0.01 12.04 83.09 1.00 1.01 16 19 N -0.56 0.82 5.94 -186.27 -1.11 -0.29 16 20 C -0.14 0.85 7.37 31.18 0.23 1.08 16 21 S 0.14 0.36 21.71 -56.49 -1.23 -0.87 16 22 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 23 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 24 H 0.09 -0.39 7.18 -2.39 -0.02 -0.40 16 25 H 0.11 -0.42 6.34 -2.38 -0.02 -0.44 16 26 H 0.40 -3.46 8.74 -74.05 -0.65 -4.11 16 27 H -0.31 -4.24 7.11 99.48 0.71 -3.53 16 28 H -0.30 -2.68 7.11 99.48 0.71 -1.97 16 29 H 0.41 0.21 8.84 -92.70 -0.82 -0.61 16 30 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.09 -0.29 8.06 -2.39 -0.02 -0.31 16 32 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 33 H 0.21 -1.52 8.06 -2.91 -0.02 -1.55 16 34 H 0.43 -3.00 7.54 -92.71 -0.70 -3.70 16 35 H 0.09 -0.61 6.65 -2.39 -0.02 -0.63 16 36 H 0.10 -0.69 8.14 -2.39 -0.02 -0.70 16 Total: 0.00 -27.00 318.23 -2.41 -29.41 By element: Atomic # 1 Polarization: -19.05 SS G_CDS: -0.98 Total: -20.03 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 6.36 Total: 8.94 kcal Atomic # 7 Polarization: -11.39 SS G_CDS: -6.89 Total: -18.28 kcal Atomic # 8 Polarization: -1.76 SS G_CDS: -1.92 Total: -3.68 kcal Atomic # 14 Polarization: 2.27 SS G_CDS: 2.24 Total: 4.50 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -1.23 Total: -0.87 kcal Total: -27.00 -2.41 -29.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14771900_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.785 kcal (2) G-P(sol) polarization free energy of solvation -26.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds