Wall clock time and date at job start Mon Mar 8 2021 07:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42107 * 108.57811 * 2 1 4 4 O 1.42101 * 108.57883 * 131.02348 * 2 1 3 5 5 C 1.81397 * 101.92362 * 245.51419 * 2 1 3 6 6 H 1.08995 * 109.47225 * 64.99593 * 5 2 1 7 7 C 1.53003 * 109.47568 * 184.99907 * 5 2 1 8 8 C 1.52999 * 109.47395 * 179.97438 * 7 5 2 9 9 C 1.52998 * 109.47020 * 300.00381 * 8 7 5 10 10 H 1.09002 * 109.47050 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.46993 * 299.99447 * 9 8 7 12 12 C 1.38411 * 120.00075 * 204.99933 * 11 9 8 13 13 N 1.32489 * 119.21775 * 359.73944 * 12 11 9 14 14 C 1.32271 * 120.74423 * 179.71700 * 13 12 11 15 15 C 1.38609 * 119.19239 * 0.54070 * 14 13 12 16 16 C 1.50702 * 120.72094 * 179.75830 * 15 14 13 17 17 O 1.42904 * 109.46974 * 244.97870 * 16 15 14 18 18 Si 1.86302 * 109.46959 * 4.97190 * 16 15 14 19 19 C 1.38605 * 118.55981 * 359.73061 * 15 14 13 20 20 N 1.32271 * 119.19398 * 0.02562 * 19 15 14 21 21 C 1.53001 * 109.47543 * 59.99926 * 9 8 7 22 22 C 1.52999 * 109.46988 * 299.99676 * 21 9 8 23 23 H 1.09001 * 109.46593 * 174.48790 * 1 2 3 24 24 H 1.09001 * 109.47186 * 294.48374 * 1 2 3 25 25 H 1.09000 * 109.47070 * 54.48793 * 1 2 3 26 26 H 1.08995 * 109.46876 * 300.00457 * 7 5 2 27 27 H 1.09000 * 109.46499 * 59.99952 * 7 5 2 28 28 H 1.09003 * 109.46871 * 60.00145 * 8 7 5 29 29 H 1.08990 * 109.46932 * 179.97438 * 8 7 5 30 30 H 0.96998 * 119.99858 * 25.00773 * 11 9 8 31 31 H 1.08000 * 120.41091 * 180.25224 * 14 13 12 32 32 H 1.08994 * 109.47425 * 124.97346 * 16 15 14 33 33 H 0.96702 * 114.00266 * 180.02562 * 17 16 15 34 34 H 1.48494 * 110.00128 * 300.00155 * 18 16 15 35 35 H 1.48496 * 110.00075 * 61.32678 * 18 16 15 36 36 H 1.08002 * 120.39895 * 180.02562 * 19 15 14 37 37 H 1.08992 * 109.46787 * 59.99910 * 21 9 8 38 38 H 1.08998 * 109.47032 * 180.02562 * 21 9 8 39 39 H 1.08995 * 109.47367 * 300.00262 * 22 21 9 40 40 H 1.08992 * 109.47418 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0162 5 6 2.1888 -0.7356 -1.6152 6 1 1.8389 -0.0726 -2.4064 7 6 3.7002 -0.9338 -1.7471 8 6 4.0162 -1.5549 -3.1092 9 6 3.3120 -2.9079 -3.2285 10 1 3.5375 -3.3506 -4.1988 11 7 3.7824 -3.7987 -2.1648 12 6 3.7214 -5.1711 -2.3339 13 7 3.2300 -5.6625 -3.4619 14 6 3.1628 -6.9689 -3.6577 15 6 3.6036 -7.8254 -2.6611 16 6 3.5378 -9.3196 -2.8455 17 8 2.6228 -9.8765 -1.8996 18 14 2.9575 -9.7072 -4.5729 19 6 4.1068 -7.2778 -1.4915 20 7 4.1506 -5.9622 -1.3617 21 6 1.8006 -2.7097 -3.0967 22 6 1.4846 -2.0888 -1.7345 23 1 -0.3632 -1.0230 -0.0987 24 1 -0.3633 0.4259 0.9353 25 1 -0.3633 0.5969 -0.8365 26 1 4.2018 0.0301 -1.6616 27 1 4.0500 -1.5969 -0.9559 28 1 3.6662 -0.8921 -3.9007 29 1 5.0928 -1.6956 -3.2033 30 1 4.1365 -3.4267 -1.3420 31 1 2.7649 -7.3635 -4.5809 32 1 4.5275 -9.7489 -2.6898 33 1 2.5303 -10.8372 -1.9603 34 1 1.6091 -9.1274 -4.7978 35 1 3.9174 -9.1610 -5.5657 36 1 4.4589 -7.9176 -0.6958 37 1 1.4507 -2.0470 -3.8881 38 1 1.2990 -3.6738 -3.1812 39 1 1.8346 -2.7515 -0.9431 40 1 0.4080 -1.9472 -1.6407 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14783810_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:01:01 Heat of formation + Delta-G solvation = -35.278266 kcal Electronic energy + Delta-G solvation = -24740.367710 eV Core-core repulsion = 21070.726112 eV Total energy + Delta-G solvation = -3669.641598 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.113 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.14174 -40.34291 -38.02534 -37.93888 -37.04412 -35.90812 -34.71485 -32.97245 -32.31027 -30.88825 -30.29623 -26.58077 -25.91571 -24.18220 -24.01404 -23.13523 -20.87002 -19.87065 -19.59724 -18.55886 -18.30046 -18.10716 -17.20903 -17.07853 -16.73589 -16.51545 -16.17426 -15.78510 -15.75734 -15.29314 -15.11202 -14.93021 -14.72922 -14.30318 -14.17497 -14.09922 -13.99620 -13.57419 -13.45403 -13.17668 -13.09927 -13.00229 -12.76731 -12.47230 -12.26738 -12.13751 -12.02071 -11.88077 -11.83394 -11.69564 -11.28780 -10.96756 -10.59876 -9.95569 -9.11572 -5.08278 -1.09536 0.05232 0.16257 1.19072 1.55308 1.63387 1.79017 1.85990 2.53921 2.78734 2.85878 3.08658 3.19451 3.27261 3.36206 3.56061 3.59214 3.65505 3.73009 3.75539 3.85929 3.87708 3.93549 3.97624 4.09102 4.15751 4.20498 4.30980 4.45458 4.49275 4.56019 4.69349 4.72785 4.78933 4.80704 4.85214 4.96123 5.03733 5.23213 5.77399 5.99541 6.39295 6.56920 7.28922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.417 3.583 3 O -0.938 6.938 4 O -0.934 6.934 5 C -0.570 4.570 6 H 0.142 0.858 7 C -0.109 4.109 8 C -0.119 4.119 9 C 0.158 3.842 10 H 0.098 0.902 11 N -0.690 5.690 12 C 0.568 3.432 13 N -0.561 5.561 14 C 0.193 3.807 15 C -0.249 4.249 16 C -0.050 4.050 17 O -0.548 6.548 18 Si 0.680 3.320 19 C 0.227 3.773 20 N -0.566 5.566 21 C -0.123 4.123 22 C -0.112 4.112 23 H 0.130 0.870 24 H 0.131 0.869 25 H 0.129 0.871 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.415 0.585 31 H 0.157 0.843 32 H 0.076 0.924 33 H 0.383 0.617 34 H -0.249 1.249 35 H -0.253 1.253 36 H 0.172 0.828 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 -4.412 -4.375 6.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.600 3.400 3 O -0.936 6.936 4 O -0.931 6.931 5 C -0.679 4.679 6 H 0.160 0.840 7 C -0.147 4.147 8 C -0.158 4.158 9 C 0.053 3.947 10 H 0.116 0.884 11 N -0.328 5.328 12 C 0.211 3.789 13 N -0.283 5.283 14 C 0.026 3.974 15 C -0.257 4.257 16 C -0.162 4.162 17 O -0.354 6.354 18 Si 0.582 3.418 19 C 0.059 3.941 20 N -0.287 5.287 21 C -0.162 4.162 22 C -0.150 4.150 23 H 0.149 0.851 24 H 0.149 0.851 25 H 0.148 0.852 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.254 0.746 31 H 0.174 0.826 32 H 0.094 0.906 33 H 0.231 0.769 34 H -0.174 1.174 35 H -0.178 1.178 36 H 0.189 0.811 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.406 -1.950 -4.326 4.949 hybrid contribution -0.362 -0.678 -0.045 0.770 sum -1.768 -2.628 -4.371 5.398 Atomic orbital electron populations 1.30300 1.26664 1.11728 1.12019 1.08091 0.78528 0.75707 0.77723 1.93618 1.79130 1.34360 1.86445 1.93613 1.78958 1.66867 1.53649 1.30245 1.05316 1.09020 1.23334 0.84031 1.21355 0.90522 1.03051 0.99782 1.21782 1.01442 0.95386 0.97197 1.20986 0.93259 0.89054 0.91406 0.88430 1.44373 1.67556 0.99793 1.21063 1.19383 0.87081 0.87221 0.85173 1.67891 1.22530 1.14809 1.23093 1.22600 0.89784 0.87934 0.97090 1.20717 1.10163 0.95903 0.98896 1.24302 0.96402 0.90849 1.04695 1.86496 1.64189 1.26448 1.58286 0.95038 0.80715 0.91244 0.74844 1.22838 0.87370 0.89384 0.94516 1.68009 1.23848 1.05674 1.31195 1.21878 0.96199 1.01739 0.96424 1.21483 0.99777 0.92979 1.00730 0.85136 0.85068 0.85200 0.89442 0.90240 0.89343 0.90136 0.74593 0.82628 0.90633 0.76867 1.17374 1.17756 0.81086 0.90254 0.90557 0.89780 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.26 10.01 101.05 1.01 3.27 16 2 S 2.42 -1.47 4.90 -107.50 -0.53 -2.00 16 3 O -0.94 -3.09 18.10 -57.83 -1.05 -4.14 16 4 O -0.93 -3.05 18.06 -57.83 -1.04 -4.09 16 5 C -0.57 1.63 2.62 -26.72 -0.07 1.56 16 6 H 0.14 -0.75 8.14 -51.93 -0.42 -1.17 16 7 C -0.11 0.22 5.03 -26.73 -0.13 0.09 16 8 C -0.12 0.31 5.61 -26.73 -0.15 0.16 16 9 C 0.16 -0.16 2.77 -67.93 -0.19 -0.35 16 10 H 0.10 -0.01 7.51 -51.93 -0.39 -0.40 16 11 N -0.69 -0.61 4.38 -55.79 -0.24 -0.85 16 12 C 0.57 1.90 8.40 -322.81 -2.71 -0.81 16 13 N -0.56 -1.92 9.20 -13.93 -0.13 -2.04 16 14 C 0.19 0.50 9.92 -17.23 -0.17 0.33 16 15 C -0.25 -0.44 5.40 -104.35 -0.56 -1.00 16 16 C -0.05 0.06 2.82 36.01 0.10 0.16 16 17 O -0.55 0.49 12.82 -35.23 -0.45 0.04 16 18 Si 0.68 -1.46 29.92 -169.99 -5.09 -6.55 16 19 C 0.23 0.53 10.99 -17.23 -0.19 0.34 16 20 N -0.57 -2.19 10.46 -13.93 -0.15 -2.34 16 21 C -0.12 0.21 5.62 -26.73 -0.15 0.06 16 22 C -0.11 0.27 4.75 -26.73 -0.13 0.14 16 23 H 0.13 -0.63 6.77 -51.92 -0.35 -0.98 16 24 H 0.13 -0.44 8.14 -51.92 -0.42 -0.87 16 25 H 0.13 -0.69 8.14 -51.92 -0.42 -1.11 16 26 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 27 H 0.08 -0.13 6.50 -51.93 -0.34 -0.46 16 28 H 0.09 -0.33 8.14 -51.93 -0.42 -0.75 16 29 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 30 H 0.41 0.16 6.98 -40.82 -0.28 -0.12 16 31 H 0.16 0.20 5.04 -52.49 -0.26 -0.07 16 32 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 33 H 0.38 -2.25 8.74 45.56 0.40 -1.85 16 34 H -0.25 -0.22 7.06 56.52 0.40 0.18 16 35 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 36 H 0.17 -0.01 8.06 -52.49 -0.42 -0.43 16 37 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 38 H 0.08 0.01 8.14 -51.93 -0.42 -0.42 16 39 H 0.08 -0.08 7.60 -51.93 -0.39 -0.47 16 40 H 0.08 -0.35 6.39 -51.93 -0.33 -0.68 16 LS Contribution 332.64 15.07 5.01 5.01 Total: 0.00 -12.48 332.64 -12.38 -24.85 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: -5.37 Total: -11.85 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -3.34 Total: 3.95 kcal Atomic # 7 Polarization: -4.72 SS G_CDS: -0.52 Total: -5.23 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -2.54 Total: -8.19 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: -5.09 Total: -6.55 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -0.53 Total: -2.00 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -12.48 -12.38 -24.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14783810_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.425 kcal (2) G-P(sol) polarization free energy of solvation -12.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds