Wall clock time and date at job start Mon Mar 8 2021 07:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42107 * 108.57811 * 2 1 4 4 O 1.42101 * 108.57883 * 131.02348 * 2 1 3 5 5 C 1.81397 * 101.92362 * 245.51419 * 2 1 3 6 6 H 1.08995 * 109.47225 * 64.99593 * 5 2 1 7 7 C 1.53003 * 109.47568 * 184.99907 * 5 2 1 8 8 C 1.52999 * 109.47395 * 179.97438 * 7 5 2 9 9 C 1.52998 * 109.47020 * 300.00381 * 8 7 5 10 10 H 1.09002 * 109.47050 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.46993 * 299.99447 * 9 8 7 12 12 C 1.38411 * 120.00075 * 204.99933 * 11 9 8 13 13 N 1.32489 * 119.21775 * 359.73944 * 12 11 9 14 14 C 1.32271 * 120.74423 * 179.71700 * 13 12 11 15 15 C 1.38609 * 119.19239 * 0.54070 * 14 13 12 16 16 C 1.50702 * 120.72094 * 179.75830 * 15 14 13 17 17 O 1.42904 * 109.46974 * 244.97870 * 16 15 14 18 18 Si 1.86302 * 109.46959 * 4.97190 * 16 15 14 19 19 C 1.38605 * 118.55981 * 359.73061 * 15 14 13 20 20 N 1.32271 * 119.19398 * 0.02562 * 19 15 14 21 21 C 1.53001 * 109.47543 * 59.99926 * 9 8 7 22 22 C 1.52999 * 109.46988 * 299.99676 * 21 9 8 23 23 H 1.09001 * 109.46593 * 174.48790 * 1 2 3 24 24 H 1.09001 * 109.47186 * 294.48374 * 1 2 3 25 25 H 1.09000 * 109.47070 * 54.48793 * 1 2 3 26 26 H 1.08995 * 109.46876 * 300.00457 * 7 5 2 27 27 H 1.09000 * 109.46499 * 59.99952 * 7 5 2 28 28 H 1.09003 * 109.46871 * 60.00145 * 8 7 5 29 29 H 1.08990 * 109.46932 * 179.97438 * 8 7 5 30 30 H 0.96998 * 119.99858 * 25.00773 * 11 9 8 31 31 H 1.08000 * 120.41091 * 180.25224 * 14 13 12 32 32 H 1.08994 * 109.47425 * 124.97346 * 16 15 14 33 33 H 0.96702 * 114.00266 * 180.02562 * 17 16 15 34 34 H 1.48494 * 110.00128 * 300.00155 * 18 16 15 35 35 H 1.48496 * 110.00075 * 61.32678 * 18 16 15 36 36 H 1.08002 * 120.39895 * 180.02562 * 19 15 14 37 37 H 1.08992 * 109.46787 * 59.99910 * 21 9 8 38 38 H 1.08998 * 109.47032 * 180.02562 * 21 9 8 39 39 H 1.08995 * 109.47367 * 300.00262 * 22 21 9 40 40 H 1.08992 * 109.47418 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0162 5 6 2.1888 -0.7356 -1.6152 6 1 1.8389 -0.0726 -2.4064 7 6 3.7002 -0.9338 -1.7471 8 6 4.0162 -1.5549 -3.1092 9 6 3.3120 -2.9079 -3.2285 10 1 3.5375 -3.3506 -4.1988 11 7 3.7824 -3.7987 -2.1648 12 6 3.7214 -5.1711 -2.3339 13 7 3.2300 -5.6625 -3.4619 14 6 3.1628 -6.9689 -3.6577 15 6 3.6036 -7.8254 -2.6611 16 6 3.5378 -9.3196 -2.8455 17 8 2.6228 -9.8765 -1.8996 18 14 2.9575 -9.7072 -4.5729 19 6 4.1068 -7.2778 -1.4915 20 7 4.1506 -5.9622 -1.3617 21 6 1.8006 -2.7097 -3.0967 22 6 1.4846 -2.0888 -1.7345 23 1 -0.3632 -1.0230 -0.0987 24 1 -0.3633 0.4259 0.9353 25 1 -0.3633 0.5969 -0.8365 26 1 4.2018 0.0301 -1.6616 27 1 4.0500 -1.5969 -0.9559 28 1 3.6662 -0.8921 -3.9007 29 1 5.0928 -1.6956 -3.2033 30 1 4.1365 -3.4267 -1.3420 31 1 2.7649 -7.3635 -4.5809 32 1 4.5275 -9.7489 -2.6898 33 1 2.5303 -10.8372 -1.9603 34 1 1.6091 -9.1274 -4.7978 35 1 3.9174 -9.1610 -5.5657 36 1 4.4589 -7.9176 -0.6958 37 1 1.4507 -2.0470 -3.8881 38 1 1.2990 -3.6738 -3.1812 39 1 1.8346 -2.7515 -0.9431 40 1 0.4080 -1.9472 -1.6407 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14783810_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:01:01 Heat of formation + Delta-G solvation = -40.468869 kcal Electronic energy + Delta-G solvation = -24740.592791 eV Core-core repulsion = 21070.726112 eV Total energy + Delta-G solvation = -3669.866679 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.113 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.26478 -40.25325 -38.08611 -37.85853 -37.11605 -35.89680 -34.88642 -32.95789 -32.15890 -30.81247 -30.09661 -26.58671 -26.05183 -24.09185 -23.84725 -23.18455 -20.79364 -19.85295 -19.67080 -18.54925 -18.25036 -18.03765 -17.16312 -17.04980 -16.74766 -16.54179 -16.16336 -15.82896 -15.74771 -15.21066 -15.04940 -14.83824 -14.71115 -14.09673 -14.05112 -13.99936 -13.88619 -13.44122 -13.30247 -13.17730 -13.15143 -13.10253 -12.68351 -12.36086 -12.28929 -12.09669 -12.02915 -11.91361 -11.79123 -11.65497 -11.22954 -10.87005 -10.58899 -10.01854 -9.19135 -4.94064 -1.00226 -0.10348 0.00893 1.32029 1.66923 1.73528 1.77448 1.96715 2.64041 2.65518 2.95340 2.98196 3.35419 3.42785 3.45181 3.47939 3.63243 3.75374 3.87674 3.89758 4.00202 4.02644 4.11082 4.12674 4.18460 4.33810 4.38597 4.47399 4.54024 4.63939 4.70423 4.79895 4.85821 4.94012 5.00810 5.02796 5.07785 5.16801 5.22844 5.67208 5.91326 6.28737 6.96425 7.14153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.410 3.590 3 O -0.986 6.986 4 O -0.985 6.985 5 C -0.549 4.549 6 H 0.177 0.823 7 C -0.118 4.118 8 C -0.111 4.111 9 C 0.154 3.846 10 H 0.087 0.913 11 N -0.686 5.686 12 C 0.553 3.447 13 N -0.572 5.572 14 C 0.176 3.824 15 C -0.254 4.254 16 C -0.055 4.055 17 O -0.566 6.566 18 Si 0.771 3.229 19 C 0.217 3.783 20 N -0.589 5.589 21 C -0.119 4.119 22 C -0.114 4.114 23 H 0.149 0.851 24 H 0.132 0.868 25 H 0.158 0.842 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.415 0.585 31 H 0.163 0.837 32 H 0.100 0.900 33 H 0.405 0.595 34 H -0.293 1.293 35 H -0.287 1.287 36 H 0.191 0.809 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.625 -4.769 -5.339 7.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.599 3.401 3 O -0.983 6.983 4 O -0.983 6.983 5 C -0.661 4.661 6 H 0.194 0.806 7 C -0.157 4.157 8 C -0.150 4.150 9 C 0.050 3.950 10 H 0.105 0.895 11 N -0.323 5.323 12 C 0.196 3.804 13 N -0.295 5.295 14 C 0.009 3.991 15 C -0.262 4.262 16 C -0.167 4.167 17 O -0.376 6.376 18 Si 0.677 3.323 19 C 0.049 3.951 20 N -0.311 5.311 21 C -0.158 4.158 22 C -0.153 4.153 23 H 0.167 0.833 24 H 0.151 0.849 25 H 0.176 0.824 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.097 0.903 30 H 0.254 0.746 31 H 0.179 0.821 32 H 0.118 0.882 33 H 0.257 0.743 34 H -0.221 1.221 35 H -0.214 1.214 36 H 0.208 0.792 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.353 -2.321 -5.247 6.201 hybrid contribution -0.113 -0.593 0.204 0.638 sum -2.467 -2.915 -5.043 6.325 Atomic orbital electron populations 1.30165 1.22456 1.13639 1.13467 1.07898 0.79960 0.74213 0.78011 1.93555 1.80972 1.36452 1.87328 1.93546 1.80852 1.67486 1.56370 1.30065 1.04795 1.09164 1.22037 0.80579 1.21445 0.91310 1.03063 0.99840 1.21754 1.01255 0.94608 0.97341 1.21135 0.94205 0.89333 0.90353 0.89460 1.44530 1.67123 0.99232 1.21457 1.19651 0.87459 0.88052 0.85253 1.67890 1.23028 1.15333 1.23265 1.22872 0.90231 0.88140 0.97818 1.21055 1.09246 0.97657 0.98280 1.24445 0.97854 0.89063 1.05291 1.86442 1.64228 1.28621 1.58327 0.94097 0.76362 0.89528 0.72273 1.23249 0.87271 0.89215 0.95328 1.68035 1.24688 1.06607 1.31756 1.21851 0.95208 1.01319 0.97465 1.21545 1.01472 0.92577 0.99681 0.83279 0.84924 0.82396 0.89113 0.91425 0.87272 0.90350 0.74628 0.82086 0.88223 0.74327 1.22097 1.21422 0.79210 0.87952 0.92477 0.91756 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 5.44 10.01 113.37 1.14 6.58 16 2 S 2.41 -1.47 4.90 -56.49 -0.28 -1.75 16 3 O -0.99 -7.66 18.10 -127.37 -2.31 -9.96 16 4 O -0.99 -8.53 18.06 -127.37 -2.30 -10.83 16 5 C -0.55 3.56 2.62 30.60 0.08 3.64 16 6 H 0.18 -2.35 8.14 -2.39 -0.02 -2.37 16 7 C -0.12 0.44 5.03 30.59 0.15 0.59 16 8 C -0.11 0.60 5.61 30.59 0.17 0.77 16 9 C 0.15 -0.24 2.77 44.99 0.12 -0.11 16 10 H 0.09 0.06 7.51 -2.39 -0.02 0.04 16 11 N -0.69 -2.28 4.38 -330.43 -1.45 -3.73 16 12 C 0.55 4.65 8.40 261.49 2.20 6.85 16 13 N -0.57 -4.84 9.20 -197.99 -1.82 -6.66 16 14 C 0.18 1.15 9.92 84.72 0.84 1.99 16 15 C -0.25 -1.06 5.40 -19.69 -0.11 -1.17 16 16 C -0.06 0.16 2.82 71.24 0.20 0.36 16 17 O -0.57 1.50 12.82 -148.98 -1.91 -0.41 16 18 Si 0.77 -3.34 29.92 68.60 2.05 -1.29 16 19 C 0.22 1.19 10.99 84.71 0.93 2.12 16 20 N -0.59 -5.51 10.46 -197.99 -2.07 -7.58 16 21 C -0.12 0.47 5.62 30.59 0.17 0.64 16 22 C -0.11 0.63 4.75 30.60 0.15 0.78 16 23 H 0.15 -1.76 6.77 -2.39 -0.02 -1.78 16 24 H 0.13 -1.03 8.14 -2.39 -0.02 -1.05 16 25 H 0.16 -2.17 8.14 -2.39 -0.02 -2.19 16 26 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.07 -0.09 6.50 -2.39 -0.02 -0.10 16 28 H 0.11 -1.01 8.14 -2.39 -0.02 -1.03 16 29 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.41 1.20 6.98 -92.71 -0.65 0.55 16 31 H 0.16 0.65 5.04 -2.91 -0.01 0.64 16 32 H 0.10 -0.76 7.96 -2.39 -0.02 -0.77 16 33 H 0.41 -5.34 8.74 -74.06 -0.65 -5.99 16 34 H -0.29 -0.85 7.06 99.48 0.70 -0.15 16 35 H -0.29 -0.35 7.11 99.48 0.71 0.35 16 36 H 0.19 0.04 8.06 -2.91 -0.02 0.01 16 37 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 38 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.06 -0.06 7.60 -2.39 -0.02 -0.07 16 40 H 0.11 -1.17 6.39 -2.39 -0.02 -1.19 16 Total: 0.00 -31.70 332.64 -4.21 -35.92 By element: Atomic # 1 Polarization: -16.57 SS G_CDS: -0.18 Total: -16.75 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 6.05 Total: 23.05 kcal Atomic # 7 Polarization: -12.62 SS G_CDS: -5.34 Total: -17.96 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -6.52 Total: -21.21 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: 2.05 Total: -1.29 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -0.28 Total: -1.75 kcal Total: -31.70 -4.21 -35.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14783810_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.551 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds