Wall clock time and date at job start Mon Mar 8 2021 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42100 * 108.57825 * 2 1 4 4 O 1.42099 * 108.57946 * 228.97348 * 2 1 3 5 5 C 1.81396 * 101.91868 * 114.48532 * 2 1 3 6 6 H 1.09002 * 109.47587 * 64.99993 * 5 2 1 7 7 C 1.53002 * 109.47197 * 185.00266 * 5 2 1 8 8 C 1.53000 * 109.47233 * 180.02562 * 7 5 2 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 5 10 10 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.47289 * 300.00274 * 9 8 7 12 12 C 1.38994 * 120.00048 * 204.99800 * 11 9 8 13 13 N 1.32401 * 119.70426 * 179.97438 * 12 11 9 14 14 C 1.31976 * 121.62003 * 180.02562 * 13 12 11 15 15 C 1.38016 * 120.85881 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.33749 * 180.02562 * 15 14 13 17 17 O 1.42892 * 109.47284 * 245.00441 * 16 15 14 18 18 Si 1.86309 * 109.46678 * 5.00134 * 16 15 14 19 19 C 1.38885 * 119.33052 * 0.02690 * 15 14 13 20 20 C 1.38296 * 118.50604 * 359.72665 * 19 15 14 21 21 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 22 22 C 1.52997 * 109.47360 * 305.00085 * 5 2 1 23 23 H 1.08995 * 109.47634 * 305.51586 * 1 2 3 24 24 H 1.09005 * 109.47123 * 65.51875 * 1 2 3 25 25 H 1.08998 * 109.47520 * 185.51165 * 1 2 3 26 26 H 1.08992 * 109.47063 * 59.99974 * 7 5 2 27 27 H 1.09004 * 109.46733 * 299.99687 * 7 5 2 28 28 H 1.09002 * 109.47398 * 59.99826 * 8 7 5 29 29 H 1.09001 * 109.47194 * 180.02562 * 8 7 5 30 30 H 0.97004 * 119.99411 * 25.00097 * 11 9 8 31 31 H 1.08003 * 119.56535 * 180.02562 * 14 13 12 32 32 H 1.08999 * 109.47276 * 124.99554 * 16 15 14 33 33 H 0.96703 * 114.00602 * 179.97438 * 17 16 15 34 34 H 1.48506 * 109.99548 * 178.68257 * 18 16 15 35 35 H 1.48498 * 109.99796 * 299.99893 * 18 16 15 36 36 H 1.07994 * 120.74579 * 180.02562 * 19 15 14 37 37 H 1.07995 * 120.45552 * 180.28938 * 20 19 15 38 38 H 1.09000 * 109.47486 * 180.02562 * 21 9 8 39 39 H 1.09002 * 109.46716 * 60.00091 * 21 9 8 40 40 H 1.09002 * 109.47153 * 300.00180 * 22 5 2 41 41 H 1.09001 * 109.47289 * 60.00264 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1886 -0.7356 1.6152 6 1 1.8387 -1.7678 1.6345 7 6 3.7000 -0.7050 1.8514 8 6 4.0160 -1.3260 3.2135 9 6 3.3118 -0.5288 4.3133 10 1 3.5372 -0.9708 5.2837 11 7 3.7819 0.8585 4.2881 12 6 3.7206 1.6341 5.4399 13 7 4.1476 2.8871 5.4107 14 6 4.1073 3.6569 6.4819 15 6 3.6143 3.1789 7.6791 16 6 3.5733 4.0685 8.8949 17 8 4.4535 3.5503 9.8942 18 14 4.1123 5.7886 8.4241 19 6 3.1564 1.8698 7.7521 20 6 3.2063 1.0885 6.6121 21 6 1.8004 -0.5593 4.0772 22 6 1.4844 0.0620 2.7146 23 1 -0.3634 0.5970 0.8364 24 1 -0.3634 0.4259 -0.9353 25 1 -0.3634 -1.0229 0.0987 26 1 4.0498 0.3271 1.8323 27 1 4.2017 -1.2733 1.0682 28 1 3.6662 -2.3582 3.2323 29 1 5.0927 -1.3037 3.3820 30 1 4.1360 1.2358 3.4676 31 1 4.4641 4.6745 6.4205 32 1 2.5569 4.1009 9.2872 33 1 4.4782 4.0742 10.7066 34 1 4.0458 6.6834 9.6075 35 1 5.4967 5.7581 7.8876 36 1 2.7657 1.4723 8.6771 37 1 2.8542 0.0678 6.6321 38 1 1.2987 0.0090 4.8603 39 1 1.4506 -1.5915 4.0959 40 1 1.8343 1.0942 2.6955 41 1 0.4077 0.0402 2.5465 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14783810_13915762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:01:05 Heat of formation + Delta-G solvation = -52.491625 kcal Electronic energy + Delta-G solvation = -24532.461041 eV Core-core repulsion = 20927.498927 eV Total energy + Delta-G solvation = -3604.962114 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.54660 -40.17836 -38.02094 -37.89939 -37.04393 -35.78193 -33.51328 -32.56043 -31.94417 -30.67480 -30.18663 -26.27683 -25.01639 -24.12583 -23.89578 -22.59910 -20.68939 -19.85435 -18.87474 -18.48536 -18.15411 -17.94885 -17.15948 -16.98537 -16.58179 -16.46049 -16.10364 -15.80264 -15.38432 -15.02873 -14.94160 -14.85461 -14.30371 -14.27055 -14.07653 -14.02450 -13.90203 -13.82948 -13.50555 -13.43325 -13.10120 -13.00179 -12.81848 -12.48855 -12.28331 -12.10835 -12.00177 -11.89941 -11.76256 -11.20815 -10.99164 -10.67062 -10.53701 -10.24536 -8.67328 -4.94903 -1.09866 0.30539 0.48790 1.30609 1.60213 1.63347 1.97305 2.07758 2.54041 2.84191 2.86318 3.17665 3.25181 3.42355 3.49155 3.66597 3.66903 3.72623 3.80175 3.86790 3.89576 3.95077 3.99534 4.11304 4.14289 4.15938 4.26260 4.38066 4.43125 4.48123 4.54488 4.65889 4.68238 4.78613 4.79419 4.81174 4.92954 4.95173 5.07406 5.34538 5.55901 6.03668 6.45594 6.56353 7.22413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.417 3.583 3 O -0.933 6.933 4 O -0.939 6.939 5 C -0.570 4.570 6 H 0.141 0.859 7 C -0.108 4.108 8 C -0.118 4.118 9 C 0.151 3.849 10 H 0.089 0.911 11 N -0.718 5.718 12 C 0.409 3.591 13 N -0.537 5.537 14 C 0.159 3.841 15 C -0.189 4.189 16 C -0.060 4.060 17 O -0.538 6.538 18 Si 0.676 3.324 19 C -0.005 4.005 20 C -0.241 4.241 21 C -0.129 4.129 22 C -0.110 4.110 23 H 0.131 0.869 24 H 0.131 0.869 25 H 0.129 0.871 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.406 0.594 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.378 0.622 34 H -0.260 1.260 35 H -0.253 1.253 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 -2.352 2.946 6.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.600 3.400 3 O -0.930 6.930 4 O -0.936 6.936 5 C -0.679 4.679 6 H 0.159 0.841 7 C -0.147 4.147 8 C -0.156 4.156 9 C 0.046 3.954 10 H 0.106 0.894 11 N -0.352 5.352 12 C 0.173 3.827 13 N -0.254 5.254 14 C 0.002 3.998 15 C -0.194 4.194 16 C -0.170 4.170 17 O -0.346 6.346 18 Si 0.577 3.423 19 C -0.031 4.031 20 C -0.266 4.266 21 C -0.169 4.169 22 C -0.148 4.148 23 H 0.149 0.851 24 H 0.149 0.851 25 H 0.148 0.852 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.244 0.756 31 H 0.172 0.828 32 H 0.092 0.908 33 H 0.226 0.774 34 H -0.185 1.185 35 H -0.178 1.178 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.927 -1.732 1.158 4.445 hybrid contribution -0.565 -0.890 2.232 2.469 sum -4.492 -2.622 3.390 6.209 Atomic orbital electron populations 1.30303 1.26682 1.11686 1.12050 1.08088 0.78516 0.76021 0.77420 1.93616 1.78927 1.34161 1.86291 1.93617 1.79131 1.67134 1.53722 1.30241 1.05336 1.12594 1.19767 0.84132 1.21350 0.90487 1.03257 0.99603 1.21741 1.01479 0.99737 0.92691 1.21012 0.93349 0.81157 0.99903 0.89351 1.44683 1.68758 1.11398 1.10318 1.18398 0.89547 0.88010 0.86710 1.67194 1.22427 1.04532 1.31250 1.22207 0.92363 0.98168 0.87100 1.19900 1.07871 0.96549 0.95083 1.24516 0.96333 1.06694 0.89466 1.86598 1.66310 1.53840 1.27804 0.95168 0.85560 0.75406 0.86132 1.21159 0.92414 0.92035 0.97486 1.21448 1.10110 1.02016 0.92976 1.21983 0.96174 1.01947 0.96764 1.21460 0.99749 0.99937 0.93650 0.85090 0.85086 0.85244 0.90056 0.89557 0.89505 0.90079 0.75626 0.82826 0.90846 0.77375 1.18512 1.17772 0.84895 0.84869 0.90533 0.90257 0.89429 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.75 10.01 101.05 1.01 3.77 16 2 S 2.42 -3.05 4.90 -107.50 -0.53 -3.58 16 3 O -0.93 -2.48 18.06 -57.83 -1.04 -3.52 16 4 O -0.94 -2.65 18.10 -57.83 -1.05 -3.70 16 5 C -0.57 2.16 2.62 -26.73 -0.07 2.09 16 6 H 0.14 -0.87 8.14 -51.92 -0.42 -1.29 16 7 C -0.11 0.30 5.03 -26.73 -0.13 0.16 16 8 C -0.12 0.43 5.61 -26.73 -0.15 0.28 16 9 C 0.15 -0.46 2.47 -67.93 -0.17 -0.62 16 10 H 0.09 -0.29 6.46 -51.93 -0.34 -0.63 16 11 N -0.72 0.44 4.40 -53.93 -0.24 0.20 16 12 C 0.41 0.66 7.63 -155.02 -1.18 -0.52 16 13 N -0.54 -1.79 10.39 -12.44 -0.13 -1.92 16 14 C 0.16 0.35 9.84 -17.57 -0.17 0.18 16 15 C -0.19 -0.29 5.39 -104.46 -0.56 -0.85 16 16 C -0.06 0.00 2.81 36.01 0.10 0.10 16 17 O -0.54 -0.64 12.82 -35.23 -0.45 -1.09 16 18 Si 0.68 -0.46 29.88 -169.99 -5.08 -5.54 16 19 C -0.01 0.00 9.83 -39.32 -0.39 -0.39 16 20 C -0.24 -0.11 8.82 -39.22 -0.35 -0.45 16 21 C -0.13 0.51 5.52 -26.71 -0.15 0.37 16 22 C -0.11 0.43 4.75 -26.71 -0.13 0.30 16 23 H 0.13 -0.75 6.77 -51.93 -0.35 -1.10 16 24 H 0.13 -0.53 8.14 -51.92 -0.42 -0.95 16 25 H 0.13 -0.78 8.14 -51.93 -0.42 -1.20 16 26 H 0.08 -0.17 6.51 -51.93 -0.34 -0.51 16 27 H 0.09 -0.24 8.14 -51.93 -0.42 -0.66 16 28 H 0.09 -0.42 8.14 -51.93 -0.42 -0.84 16 29 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 30 H 0.41 -0.13 6.99 -40.82 -0.29 -0.41 16 31 H 0.16 0.08 4.87 -52.48 -0.26 -0.17 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 33 H 0.38 -1.05 8.74 45.56 0.40 -0.65 16 34 H -0.26 -0.31 7.11 56.52 0.40 0.09 16 35 H -0.25 -0.64 7.05 56.52 0.40 -0.24 16 36 H 0.13 -0.07 8.06 -52.49 -0.42 -0.49 16 37 H 0.13 -0.23 6.06 -52.49 -0.32 -0.55 16 38 H 0.08 -0.26 7.63 -51.93 -0.40 -0.65 16 39 H 0.08 -0.42 8.14 -51.93 -0.42 -0.84 16 40 H 0.09 -0.20 7.61 -51.93 -0.39 -0.60 16 41 H 0.08 -0.47 6.39 -51.93 -0.33 -0.80 16 LS Contribution 334.08 15.07 5.03 5.03 Total: 0.00 -12.03 334.08 -11.42 -23.45 By element: Atomic # 1 Polarization: -8.12 SS G_CDS: -5.60 Total: -13.73 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -2.34 Total: 4.40 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: -0.37 Total: -1.72 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -2.54 Total: -8.31 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: -5.08 Total: -5.54 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -0.53 Total: -3.58 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -12.03 -11.42 -23.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14783810_13915762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.040 kcal (2) G-P(sol) polarization free energy of solvation -12.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds