Wall clock time and date at job start Mon Mar 8 2021 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42100 * 108.57825 * 2 1 4 4 O 1.42099 * 108.57946 * 228.97348 * 2 1 3 5 5 C 1.81396 * 101.91868 * 114.48532 * 2 1 3 6 6 H 1.09002 * 109.47587 * 64.99993 * 5 2 1 7 7 C 1.53002 * 109.47197 * 185.00266 * 5 2 1 8 8 C 1.53000 * 109.47233 * 180.02562 * 7 5 2 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 5 10 10 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.47289 * 300.00274 * 9 8 7 12 12 C 1.38994 * 120.00048 * 204.99800 * 11 9 8 13 13 N 1.32401 * 119.70426 * 179.97438 * 12 11 9 14 14 C 1.31976 * 121.62003 * 180.02562 * 13 12 11 15 15 C 1.38016 * 120.85881 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.33749 * 180.02562 * 15 14 13 17 17 O 1.42892 * 109.47284 * 245.00441 * 16 15 14 18 18 Si 1.86309 * 109.46678 * 5.00134 * 16 15 14 19 19 C 1.38885 * 119.33052 * 0.02690 * 15 14 13 20 20 C 1.38296 * 118.50604 * 359.72665 * 19 15 14 21 21 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 22 22 C 1.52997 * 109.47360 * 305.00085 * 5 2 1 23 23 H 1.08995 * 109.47634 * 305.51586 * 1 2 3 24 24 H 1.09005 * 109.47123 * 65.51875 * 1 2 3 25 25 H 1.08998 * 109.47520 * 185.51165 * 1 2 3 26 26 H 1.08992 * 109.47063 * 59.99974 * 7 5 2 27 27 H 1.09004 * 109.46733 * 299.99687 * 7 5 2 28 28 H 1.09002 * 109.47398 * 59.99826 * 8 7 5 29 29 H 1.09001 * 109.47194 * 180.02562 * 8 7 5 30 30 H 0.97004 * 119.99411 * 25.00097 * 11 9 8 31 31 H 1.08003 * 119.56535 * 180.02562 * 14 13 12 32 32 H 1.08999 * 109.47276 * 124.99554 * 16 15 14 33 33 H 0.96703 * 114.00602 * 179.97438 * 17 16 15 34 34 H 1.48506 * 109.99548 * 178.68257 * 18 16 15 35 35 H 1.48498 * 109.99796 * 299.99893 * 18 16 15 36 36 H 1.07994 * 120.74579 * 180.02562 * 19 15 14 37 37 H 1.07995 * 120.45552 * 180.28938 * 20 19 15 38 38 H 1.09000 * 109.47486 * 180.02562 * 21 9 8 39 39 H 1.09002 * 109.46716 * 60.00091 * 21 9 8 40 40 H 1.09002 * 109.47153 * 300.00180 * 22 5 2 41 41 H 1.09001 * 109.47289 * 60.00264 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1886 -0.7356 1.6152 6 1 1.8387 -1.7678 1.6345 7 6 3.7000 -0.7050 1.8514 8 6 4.0160 -1.3260 3.2135 9 6 3.3118 -0.5288 4.3133 10 1 3.5372 -0.9708 5.2837 11 7 3.7819 0.8585 4.2881 12 6 3.7206 1.6341 5.4399 13 7 4.1476 2.8871 5.4107 14 6 4.1073 3.6569 6.4819 15 6 3.6143 3.1789 7.6791 16 6 3.5733 4.0685 8.8949 17 8 4.4535 3.5503 9.8942 18 14 4.1123 5.7886 8.4241 19 6 3.1564 1.8698 7.7521 20 6 3.2063 1.0885 6.6121 21 6 1.8004 -0.5593 4.0772 22 6 1.4844 0.0620 2.7146 23 1 -0.3634 0.5970 0.8364 24 1 -0.3634 0.4259 -0.9353 25 1 -0.3634 -1.0229 0.0987 26 1 4.0498 0.3271 1.8323 27 1 4.2017 -1.2733 1.0682 28 1 3.6662 -2.3582 3.2323 29 1 5.0927 -1.3037 3.3820 30 1 4.1360 1.2358 3.4676 31 1 4.4641 4.6745 6.4205 32 1 2.5569 4.1009 9.2872 33 1 4.4782 4.0742 10.7066 34 1 4.0458 6.6834 9.6075 35 1 5.4967 5.7581 7.8876 36 1 2.7657 1.4723 8.6771 37 1 2.8542 0.0678 6.6321 38 1 1.2987 0.0090 4.8603 39 1 1.4506 -1.5915 4.0959 40 1 1.8343 1.0942 2.6955 41 1 0.4077 0.0402 2.5465 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14783810_13915762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:01:05 Heat of formation + Delta-G solvation = -57.938914 kcal Electronic energy + Delta-G solvation = -24532.697254 eV Core-core repulsion = 20927.498927 eV Total energy + Delta-G solvation = -3605.198326 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51763 -40.00723 -38.04172 -37.90424 -37.06353 -35.68755 -33.54205 -32.33521 -31.79282 -30.48406 -29.96041 -26.26268 -24.96526 -23.93508 -23.66143 -22.57656 -20.49221 -19.75499 -18.81625 -18.47464 -18.03383 -17.89670 -17.06258 -16.90232 -16.57543 -16.31248 -15.97709 -15.67779 -15.36784 -14.96610 -14.83625 -14.62500 -14.14567 -14.00895 -13.94024 -13.90910 -13.86907 -13.76100 -13.29437 -13.17927 -13.09936 -13.05250 -12.64893 -12.30204 -12.20065 -12.03536 -11.93690 -11.71091 -11.55952 -11.05156 -10.86211 -10.66161 -10.56432 -10.27357 -8.64808 -4.92214 -0.94429 0.25434 0.44730 1.32655 1.58642 1.83420 1.95281 2.17094 2.70789 2.82133 3.03782 3.42612 3.48217 3.53247 3.61362 3.81453 3.87323 3.94933 4.04848 4.06736 4.09852 4.13699 4.20367 4.26101 4.36067 4.40908 4.45166 4.52668 4.60750 4.77868 4.79747 4.87762 4.90277 5.01115 5.06389 5.10309 5.13105 5.23407 5.25253 5.35844 5.58381 6.10628 6.54885 6.63897 7.18981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.404 3.596 3 O -0.987 6.987 4 O -0.991 6.991 5 C -0.547 4.547 6 H 0.176 0.824 7 C -0.119 4.119 8 C -0.112 4.112 9 C 0.146 3.854 10 H 0.096 0.904 11 N -0.716 5.716 12 C 0.396 3.604 13 N -0.571 5.571 14 C 0.142 3.858 15 C -0.200 4.200 16 C -0.062 4.062 17 O -0.560 6.560 18 Si 0.746 3.254 19 C -0.013 4.013 20 C -0.237 4.237 21 C -0.125 4.125 22 C -0.116 4.116 23 H 0.152 0.848 24 H 0.130 0.870 25 H 0.157 0.843 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.401 0.599 31 H 0.158 0.842 32 H 0.098 0.902 33 H 0.394 0.606 34 H -0.281 1.281 35 H -0.304 1.304 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.601 -4.169 4.272 9.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.594 3.406 3 O -0.984 6.984 4 O -0.988 6.988 5 C -0.658 4.658 6 H 0.193 0.807 7 C -0.158 4.158 8 C -0.151 4.151 9 C 0.041 3.959 10 H 0.114 0.886 11 N -0.349 5.349 12 C 0.160 3.840 13 N -0.288 5.288 14 C -0.015 4.015 15 C -0.205 4.205 16 C -0.172 4.172 17 O -0.369 6.369 18 Si 0.652 3.348 19 C -0.038 4.038 20 C -0.262 4.262 21 C -0.165 4.165 22 C -0.154 4.154 23 H 0.171 0.829 24 H 0.149 0.851 25 H 0.176 0.824 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.237 0.763 31 H 0.175 0.825 32 H 0.116 0.884 33 H 0.244 0.756 34 H -0.208 1.208 35 H -0.232 1.232 36 H 0.167 0.833 37 H 0.175 0.825 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.085 0.915 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.089 -3.544 2.458 7.462 hybrid contribution 0.132 -0.346 1.840 1.877 sum -5.958 -3.889 4.298 8.312 Atomic orbital electron populations 1.30151 1.22277 1.14065 1.13084 1.08026 0.80067 0.74526 0.77970 1.93547 1.80878 1.36677 1.87319 1.93548 1.81058 1.67663 1.56543 1.30031 1.04662 1.14139 1.16980 0.80664 1.21432 0.91446 1.02529 1.00354 1.21735 1.01162 1.00608 0.91569 1.21253 0.94371 0.79788 1.00466 0.88576 1.44883 1.68349 1.12166 1.09496 1.18691 0.89712 0.87818 0.87814 1.67161 1.23765 1.05766 1.32141 1.22360 0.93076 0.98537 0.87550 1.20087 1.07849 0.97312 0.95250 1.24604 0.97470 1.06113 0.88994 1.86549 1.66774 1.54785 1.28836 0.94340 0.82466 0.74221 0.83732 1.21431 0.92256 0.91871 0.98281 1.21678 1.09309 1.02939 0.92232 1.21995 0.94970 1.03335 0.96192 1.21572 1.01384 0.98761 0.93681 0.82946 0.85145 0.82424 0.91632 0.89877 0.87322 0.90811 0.76255 0.82548 0.88414 0.75570 1.20816 1.23179 0.83315 0.82536 0.90767 0.87748 0.91528 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.40 10.01 113.37 1.14 7.54 16 2 S 2.40 -3.90 4.90 -56.49 -0.28 -4.18 16 3 O -0.99 -7.81 18.06 -127.37 -2.30 -10.11 16 4 O -0.99 -7.30 18.10 -127.37 -2.30 -9.61 16 5 C -0.55 4.64 2.62 30.59 0.08 4.72 16 6 H 0.18 -2.70 8.14 -2.39 -0.02 -2.72 16 7 C -0.12 0.59 5.03 30.60 0.15 0.74 16 8 C -0.11 0.90 5.61 30.59 0.17 1.07 16 9 C 0.15 -1.04 2.47 44.99 0.11 -0.92 16 10 H 0.10 -0.81 6.46 -2.39 -0.02 -0.83 16 11 N -0.72 0.41 4.40 -324.54 -1.43 -1.02 16 12 C 0.40 1.56 7.63 133.07 1.02 2.57 16 13 N -0.57 -4.82 10.39 -193.26 -2.01 -6.82 16 14 C 0.14 0.85 9.84 84.62 0.83 1.69 16 15 C -0.20 -0.68 5.39 -19.76 -0.11 -0.79 16 16 C -0.06 0.02 2.81 71.24 0.20 0.22 16 17 O -0.56 -1.21 12.82 -148.98 -1.91 -3.12 16 18 Si 0.75 -0.36 29.88 68.60 2.05 1.69 16 19 C -0.01 -0.02 9.83 22.44 0.22 0.20 16 20 C -0.24 -0.07 8.82 22.50 0.20 0.13 16 21 C -0.13 1.29 5.52 30.61 0.17 1.46 16 22 C -0.12 1.07 4.75 30.61 0.15 1.22 16 23 H 0.15 -2.13 6.77 -2.39 -0.02 -2.15 16 24 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 25 H 0.16 -2.41 8.14 -2.39 -0.02 -2.43 16 26 H 0.07 -0.12 6.51 -2.39 -0.02 -0.13 16 27 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 28 H 0.11 -1.32 8.14 -2.39 -0.02 -1.33 16 29 H 0.07 -0.47 8.14 -2.39 -0.02 -0.48 16 30 H 0.40 0.53 6.99 -92.71 -0.65 -0.12 16 31 H 0.16 0.53 4.87 -2.91 -0.01 0.52 16 32 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 33 H 0.39 -2.32 8.74 -74.05 -0.65 -2.97 16 34 H -0.28 -0.81 7.11 99.48 0.71 -0.11 16 35 H -0.30 -2.36 7.05 99.48 0.70 -1.66 16 36 H 0.15 -0.36 8.06 -2.91 -0.02 -0.38 16 37 H 0.16 -0.83 6.06 -2.91 -0.02 -0.85 16 38 H 0.07 -0.66 7.63 -2.39 -0.02 -0.68 16 39 H 0.10 -1.54 8.14 -2.39 -0.02 -1.55 16 40 H 0.07 -0.28 7.61 -2.39 -0.02 -0.30 16 41 H 0.11 -1.60 6.39 -2.39 -0.02 -1.61 16 Total: 0.00 -31.15 334.08 -4.05 -35.20 By element: Atomic # 1 Polarization: -21.68 SS G_CDS: -0.20 Total: -21.87 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 4.33 Total: 19.85 kcal Atomic # 7 Polarization: -4.41 SS G_CDS: -3.44 Total: -7.85 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -6.51 Total: -22.84 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: 2.05 Total: 1.69 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -0.28 Total: -4.18 kcal Total: -31.15 -4.05 -35.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14783810_13915762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.738 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds