Wall clock time and date at job start Mon Mar 8 2021 07:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42093 * 108.58084 * 2 1 4 4 O 1.42102 * 108.57802 * 228.96872 * 2 1 3 5 5 C 1.81409 * 101.91949 * 114.48786 * 2 1 3 6 6 H 1.08993 * 109.47018 * 64.99425 * 5 2 1 7 7 C 1.52999 * 109.46821 * 185.00056 * 5 2 1 8 8 C 1.53006 * 109.46626 * 179.97438 * 7 5 2 9 9 C 1.52997 * 109.47127 * 299.99539 * 8 7 5 10 10 H 1.09002 * 109.47153 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.47473 * 300.00373 * 9 8 7 12 12 C 1.38604 * 120.00179 * 205.00058 * 11 9 8 13 13 N 1.29691 * 124.95153 * 0.02562 * 12 11 9 14 14 C 1.32120 * 116.86893 * 179.97438 * 13 12 11 15 15 C 1.33330 * 114.57574 * 359.97438 * 14 13 12 16 16 C 1.50697 * 125.94540 * 179.97438 * 15 14 13 17 17 O 1.42894 * 109.47550 * 299.99966 * 16 15 14 18 18 Si 1.86308 * 109.46981 * 180.02562 * 16 15 14 19 19 S 1.70965 * 124.94886 * 179.71845 * 12 11 9 20 20 C 1.53002 * 109.46817 * 60.00361 * 9 8 7 21 21 C 1.52996 * 109.46972 * 299.99733 * 20 9 8 22 22 H 1.09001 * 109.47051 * 305.52087 * 1 2 3 23 23 H 1.09006 * 109.47000 * 65.51386 * 1 2 3 24 24 H 1.08994 * 109.47899 * 185.51336 * 1 2 3 25 25 H 1.08993 * 109.47839 * 59.99872 * 7 5 2 26 26 H 1.09000 * 109.47160 * 299.99434 * 7 5 2 27 27 H 1.09001 * 109.46801 * 59.99811 * 8 7 5 28 28 H 1.09001 * 109.46998 * 179.97438 * 8 7 5 29 29 H 0.97006 * 119.99630 * 24.99365 * 11 9 8 30 30 H 1.07995 * 122.70632 * 179.97438 * 14 13 12 31 31 H 1.09006 * 109.47448 * 60.00631 * 16 15 14 32 32 H 0.96699 * 114.00538 * 180.02562 * 17 16 15 33 33 H 1.48503 * 109.99763 * 298.68011 * 18 16 15 34 34 H 1.48502 * 109.99881 * 60.00064 * 18 16 15 35 35 H 1.08996 * 109.47407 * 60.00219 * 20 9 8 36 36 H 1.09000 * 109.46986 * 179.97438 * 20 9 8 37 37 H 1.09001 * 109.46993 * 180.02562 * 21 20 9 38 38 H 1.09000 * 109.47380 * 299.99696 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1886 -0.7357 1.6153 6 1 1.8387 -1.7678 1.6344 7 6 3.7000 -0.7051 1.8514 8 6 4.0159 -1.3251 3.2141 9 6 3.3118 -0.5268 4.3131 10 1 3.5372 -0.9682 5.2839 11 7 3.7822 0.8604 4.2868 12 6 3.7212 1.6348 5.4348 13 7 3.2678 1.2303 6.5806 14 6 3.2843 2.1042 7.5714 15 6 3.7745 3.3010 7.2472 16 6 3.9108 4.4817 8.1736 17 8 2.6223 4.8482 8.6710 18 14 4.6487 5.9181 7.2446 19 16 4.2395 3.2600 5.5485 20 6 1.8004 -0.5574 4.0770 21 6 1.4845 0.0625 2.7143 22 1 -0.3633 0.5971 0.8364 23 1 -0.3633 0.4260 -0.9353 24 1 -0.3635 -1.0228 0.0987 25 1 4.0500 0.3270 1.8323 26 1 4.2017 -1.2734 1.0682 27 1 3.6659 -2.3571 3.2336 28 1 5.0927 -1.3037 3.3821 29 1 4.1364 1.2369 3.4660 30 1 2.9293 1.8681 8.5636 31 1 4.5602 4.2159 9.0078 32 1 2.6340 5.6033 9.2749 33 1 6.0023 5.5608 6.7490 34 1 3.7723 6.2900 6.1049 35 1 1.4504 -1.5894 4.0966 36 1 1.2988 0.0109 4.8602 37 1 0.4078 0.0411 2.5463 38 1 1.8345 1.0946 2.6948 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14783810_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:01:09 Heat of formation + Delta-G solvation = -45.302500 kcal Electronic energy + Delta-G solvation = -23116.080102 eV Core-core repulsion = 19600.581979 eV Total energy + Delta-G solvation = -3515.498124 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.074 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.09168 -39.96767 -38.05665 -37.78750 -37.09182 -35.72057 -32.51180 -31.96319 -30.86615 -30.34462 -26.58028 -24.91458 -24.06576 -23.98571 -21.67193 -20.12594 -19.85585 -19.55589 -18.47609 -18.18333 -17.55726 -17.24953 -17.10270 -16.49455 -16.43873 -15.75861 -15.59620 -15.47465 -15.11953 -14.94933 -14.54688 -14.33868 -14.26076 -14.18762 -14.04708 -13.58161 -13.48549 -13.14797 -13.05117 -12.91454 -12.72718 -12.51387 -12.39605 -12.16397 -12.07369 -12.02652 -11.78777 -11.25121 -10.98230 -10.60311 -10.32361 -10.12368 -8.74049 -5.20605 -1.13788 -0.02836 0.11154 0.68028 1.24206 1.59014 1.59122 1.94710 2.03850 2.10252 2.49494 2.81781 3.14394 3.23477 3.44467 3.52531 3.63682 3.67671 3.70864 3.82611 3.89299 3.93810 3.98891 4.10827 4.17058 4.27832 4.41890 4.45523 4.52941 4.65593 4.73614 4.76660 4.78828 4.81873 4.90128 5.02776 5.15911 5.82955 6.01695 6.58666 6.99548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.416 3.584 3 O -0.936 6.936 4 O -0.938 6.938 5 C -0.571 4.571 6 H 0.143 0.857 7 C -0.108 4.108 8 C -0.120 4.120 9 C 0.159 3.841 10 H 0.097 0.903 11 N -0.688 5.688 12 C 0.331 3.669 13 N -0.546 5.546 14 C 0.123 3.877 15 C -0.262 4.262 16 C -0.016 4.016 17 O -0.545 6.545 18 Si 0.666 3.334 19 S 0.069 5.931 20 C -0.123 4.123 21 C -0.111 4.111 22 H 0.131 0.869 23 H 0.131 0.869 24 H 0.130 0.870 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.413 0.587 30 H 0.178 0.822 31 H 0.081 0.919 32 H 0.383 0.617 33 H -0.242 1.242 34 H -0.239 1.239 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 0.152 3.744 3.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.599 3.401 3 O -0.933 6.933 4 O -0.935 6.935 5 C -0.680 4.680 6 H 0.161 0.839 7 C -0.147 4.147 8 C -0.159 4.159 9 C 0.052 3.948 10 H 0.115 0.885 11 N -0.329 5.329 12 C -0.039 4.039 13 N -0.272 5.272 14 C -0.028 4.028 15 C -0.384 4.384 16 C -0.130 4.130 17 O -0.352 6.352 18 Si 0.566 3.434 19 S 0.318 5.682 20 C -0.163 4.163 21 C -0.149 4.149 22 H 0.149 0.851 23 H 0.150 0.850 24 H 0.149 0.851 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.252 0.748 30 H 0.195 0.805 31 H 0.099 0.901 32 H 0.231 0.769 33 H -0.166 1.166 34 H -0.162 1.162 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.086 0.225 1.252 1.275 hybrid contribution -0.956 -0.920 1.125 1.740 sum -0.870 -0.695 2.377 2.625 Atomic orbital electron populations 1.30295 1.26525 1.11791 1.12072 1.08102 0.78588 0.75990 0.77441 1.93602 1.79040 1.34280 1.86355 1.93619 1.79142 1.67050 1.53698 1.30251 1.05254 1.12782 1.19684 0.83931 1.21352 0.90600 1.02897 0.99828 1.21796 1.01467 1.00052 0.92562 1.21040 0.93316 0.80187 1.00261 0.88460 1.44291 1.68610 1.12050 1.07965 1.23806 0.96099 0.93069 0.90963 1.66476 1.27034 1.35212 0.98452 1.21328 0.96036 0.86994 0.98396 1.24280 1.18351 1.00137 0.95676 1.23663 0.89952 1.00115 0.99250 1.86507 1.27343 1.54191 1.67158 0.95195 0.80385 0.84263 0.83598 1.84189 1.64367 1.10474 1.09209 1.21881 0.96168 1.02017 0.96243 1.21478 0.99876 0.99572 0.93999 0.85083 0.85047 0.85145 0.90510 0.89388 0.89264 0.90107 0.74807 0.80531 0.90088 0.76901 1.16607 1.16226 0.90248 0.90289 0.90198 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.48 10.01 101.05 1.01 3.49 16 2 S 2.42 -2.46 4.90 -107.50 -0.53 -2.99 16 3 O -0.94 -2.51 18.06 -57.83 -1.04 -3.55 16 4 O -0.94 -2.77 18.10 -57.83 -1.05 -3.82 16 5 C -0.57 1.90 2.62 -26.73 -0.07 1.82 16 6 H 0.14 -0.80 8.14 -51.93 -0.42 -1.23 16 7 C -0.11 0.28 5.03 -26.73 -0.13 0.15 16 8 C -0.12 0.37 5.61 -26.73 -0.15 0.22 16 9 C 0.16 -0.23 2.91 -67.93 -0.20 -0.43 16 10 H 0.10 -0.02 7.76 -51.93 -0.40 -0.42 16 11 N -0.69 0.12 4.38 -55.78 -0.24 -0.13 16 12 C 0.33 0.78 8.06 -87.68 -0.71 0.07 16 13 N -0.55 -1.89 9.90 -15.21 -0.15 -2.04 16 14 C 0.12 0.37 11.22 -19.14 -0.21 0.15 16 15 C -0.26 -0.72 5.78 -36.02 -0.21 -0.92 16 16 C -0.02 0.00 2.98 36.00 0.11 0.10 16 17 O -0.55 -0.08 12.84 -35.23 -0.45 -0.53 16 18 Si 0.67 -0.33 31.05 -169.99 -5.28 -5.61 16 19 S 0.07 0.19 20.57 -107.50 -2.21 -2.03 16 20 C -0.12 0.25 5.62 -26.73 -0.15 0.10 16 21 C -0.11 0.32 4.75 -26.73 -0.13 0.20 16 22 H 0.13 -0.68 6.77 -51.92 -0.35 -1.03 16 23 H 0.13 -0.49 8.14 -51.92 -0.42 -0.91 16 24 H 0.13 -0.73 8.14 -51.93 -0.42 -1.15 16 25 H 0.08 -0.19 6.50 -51.93 -0.34 -0.53 16 26 H 0.09 -0.25 8.14 -51.93 -0.42 -0.68 16 27 H 0.09 -0.36 8.14 -51.93 -0.42 -0.79 16 28 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 29 H 0.41 -0.55 6.99 -40.82 -0.29 -0.84 16 30 H 0.18 0.23 8.06 -52.49 -0.42 -0.19 16 31 H 0.08 -0.14 7.96 -51.93 -0.41 -0.56 16 32 H 0.38 -1.92 8.74 45.56 0.40 -1.52 16 33 H -0.24 -0.45 7.11 56.52 0.40 -0.05 16 34 H -0.24 -0.68 7.11 56.52 0.40 -0.28 16 35 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 36 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 37 H 0.08 -0.39 6.39 -51.93 -0.33 -0.72 16 38 H 0.08 -0.15 7.60 -51.93 -0.39 -0.54 16 LS Contribution 330.53 15.07 4.98 4.98 Total: 0.00 -12.03 330.53 -11.94 -23.97 By element: Atomic # 1 Polarization: -8.09 SS G_CDS: -5.12 Total: -13.22 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -0.84 Total: 4.95 kcal Atomic # 7 Polarization: -1.77 SS G_CDS: -0.40 Total: -2.17 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -2.54 Total: -7.90 kcal Atomic # 14 Polarization: -0.33 SS G_CDS: -5.28 Total: -5.61 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -2.74 Total: -5.01 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -12.03 -11.94 -23.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14783810_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.333 kcal (2) G-P(sol) polarization free energy of solvation -12.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds