Wall clock time and date at job start Mon Mar 8 2021 07:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33334 * 125.95301 * 2 1 4 4 C 1.50700 * 122.70638 * 359.97438 * 3 2 1 5 5 O 1.42896 * 109.47362 * 329.99892 * 4 3 2 6 6 Si 1.86298 * 109.47053 * 209.99981 * 4 3 2 7 7 N 1.32120 * 114.58217 * 180.02562 * 3 2 1 8 8 C 1.29691 * 116.86276 * 359.97438 * 7 3 2 9 9 N 1.38615 * 124.94507 * 179.97438 * 8 7 3 10 10 C 1.46502 * 119.99601 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47150 * 35.00098 * 10 9 8 12 12 C 1.53008 * 109.46784 * 154.99915 * 10 9 8 13 13 C 1.52997 * 109.47033 * 59.99738 * 12 10 9 14 14 C 1.52998 * 109.47123 * 60.00106 * 13 12 10 15 15 H 1.09003 * 109.47598 * 59.99699 * 14 13 12 16 16 S 1.81399 * 109.47320 * 179.97438 * 14 13 12 17 17 C 1.81404 * 101.92308 * 180.02562 * 16 14 13 18 18 O 1.42102 * 108.57907 * 65.51234 * 16 14 13 19 19 O 1.42104 * 108.57735 * 294.48838 * 16 14 13 20 20 C 1.52998 * 109.47110 * 299.99849 * 14 13 12 21 21 C 1.52998 * 109.47163 * 274.99681 * 10 9 8 22 22 S 1.70958 * 110.10346 * 0.24401 * 8 7 3 23 23 H 1.08998 * 109.47345 * 90.00276 * 1 2 3 24 24 H 1.09004 * 109.47068 * 210.00196 * 1 2 3 25 25 H 1.09004 * 109.47569 * 329.99917 * 1 2 3 26 26 H 1.09002 * 109.47211 * 90.00292 * 4 3 2 27 27 H 0.96696 * 114.00058 * 179.97438 * 5 4 3 28 28 H 1.48502 * 110.00285 * 298.68586 * 6 4 3 29 29 H 1.48503 * 110.00193 * 60.00237 * 6 4 3 30 30 H 0.96997 * 119.99875 * 0.02562 * 9 8 7 31 31 H 1.09004 * 109.46698 * 299.99965 * 12 10 9 32 32 H 1.08994 * 109.46949 * 179.97438 * 12 10 9 33 33 H 1.08998 * 109.47655 * 300.00020 * 13 12 10 34 34 H 1.08997 * 109.46950 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.47124 * 299.99874 * 17 16 14 36 36 H 1.09001 * 109.46975 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.47147 * 59.99959 * 17 16 14 38 38 H 1.09007 * 109.47235 * 179.97438 * 20 14 13 39 39 H 1.09002 * 109.47408 * 299.99674 * 20 14 13 40 40 H 1.08997 * 109.46824 * 60.00156 * 21 10 9 41 41 H 1.08997 * 109.47116 * 180.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4815 2.5020 -0.6747 6 14 2.9325 3.6147 -0.8787 7 7 3.5850 0.8188 -0.0005 8 6 3.9314 -0.4309 -0.0005 9 7 5.2384 -0.8926 -0.0015 10 6 5.5065 -2.3329 -0.0007 11 1 4.7448 -2.8445 -0.5890 12 6 6.8845 -2.5954 -0.6117 13 6 7.9537 -1.8771 0.2141 14 6 7.9249 -2.4005 1.6515 15 1 8.1244 -3.4721 1.6521 16 16 9.1931 -1.5495 2.6303 17 6 8.9815 -2.3126 4.2624 18 8 8.8456 -0.1748 2.7243 19 8 10.4718 -1.9090 2.1253 20 6 6.5470 -2.1380 2.2624 21 6 5.4778 -2.8562 1.4367 22 16 2.5413 -1.4260 -0.0065 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5139 26 1 1.6088 2.8217 1.0270 27 1 0.0690 3.3757 -0.7129 28 1 4.2370 3.6285 -0.1691 29 1 3.1218 3.1637 -2.2808 30 1 5.9755 -0.2620 -0.0019 31 1 6.9049 -2.2225 -1.6357 32 1 7.0842 -3.6669 -0.6107 33 1 7.7542 -0.8056 0.2136 34 1 8.9354 -2.0646 -0.2209 35 1 7.9689 -2.1281 4.6213 36 1 9.6990 -1.8817 4.9607 37 1 9.1498 -3.3868 4.1858 38 1 6.5264 -2.5112 3.2863 39 1 6.3475 -1.0664 2.2619 40 1 4.4961 -2.6691 1.8718 41 1 5.6777 -3.9277 1.4373 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14783810_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:01:14 Heat of formation + Delta-G solvation = -50.342311 kcal Electronic energy + Delta-G solvation = -25249.868977 eV Core-core repulsion = 21578.614692 eV Total energy + Delta-G solvation = -3671.254285 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.090 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.16627 -40.39260 -38.07041 -37.67009 -37.09790 -35.84088 -33.01792 -32.44739 -31.21553 -30.45426 -28.98724 -25.59267 -24.57764 -24.40988 -23.98145 -21.17145 -20.38839 -19.91536 -19.10732 -18.24753 -18.03171 -17.46003 -17.25880 -17.07869 -16.58205 -16.47575 -16.01752 -15.59998 -15.43752 -15.10167 -15.00616 -14.39289 -14.28597 -14.20837 -14.04383 -13.86737 -13.75645 -13.68885 -13.58816 -13.35393 -13.15050 -13.05801 -12.93470 -12.82666 -12.58436 -12.17598 -12.09498 -12.00705 -11.85656 -11.67031 -11.23033 -11.03977 -10.57647 -10.26388 -9.95138 -8.59362 -4.78678 -1.15930 0.07598 0.18717 0.80737 1.42386 1.57555 1.80230 1.94305 1.98634 2.40988 2.47978 2.77912 3.09208 3.12061 3.17904 3.39753 3.56161 3.64888 3.68991 3.79838 3.88522 3.98978 4.00978 4.06029 4.15113 4.23543 4.35428 4.41340 4.45213 4.48391 4.53130 4.61587 4.68928 4.71460 4.80509 4.84947 4.90198 4.96294 5.16706 5.38754 5.58502 6.24342 6.64314 6.94436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.227 4.227 3 C 0.101 3.899 4 C -0.035 4.035 5 O -0.544 6.544 6 Si 0.710 3.290 7 N -0.548 5.548 8 C 0.321 3.679 9 N -0.691 5.691 10 C 0.149 3.851 11 H 0.088 0.912 12 C -0.116 4.116 13 C -0.109 4.109 14 C -0.572 4.572 15 H 0.142 0.858 16 S 2.416 3.584 17 C -0.657 4.657 18 O -0.933 6.933 19 O -0.937 6.937 20 C -0.110 4.110 21 C -0.130 4.130 22 S 0.098 5.902 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.385 0.615 28 H -0.251 1.251 29 H -0.264 1.264 30 H 0.412 0.588 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 -3.003 1.899 5.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.349 4.349 3 C -0.028 4.028 4 C -0.148 4.148 5 O -0.351 6.351 6 Si 0.610 3.390 7 N -0.275 5.275 8 C -0.051 4.051 9 N -0.333 5.333 10 C 0.044 3.956 11 H 0.106 0.894 12 C -0.154 4.154 13 C -0.148 4.148 14 C -0.681 4.681 15 H 0.160 0.840 16 S 2.599 3.401 17 C -0.806 4.806 18 O -0.930 6.930 19 O -0.934 6.934 20 C -0.148 4.148 21 C -0.170 4.170 22 S 0.346 5.654 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.233 0.767 28 H -0.175 1.175 29 H -0.189 1.189 30 H 0.252 0.748 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.721 -3.796 1.160 4.327 hybrid contribution -0.443 -0.291 0.642 0.832 sum -2.164 -4.088 1.801 4.964 Atomic orbital electron populations 1.20097 0.86208 1.02444 1.02805 1.25159 1.01507 0.92349 1.15934 1.18940 0.86417 0.95091 1.02351 1.23950 0.93090 0.96262 1.01463 1.86460 1.33807 1.35709 1.79089 0.96192 0.79073 0.84624 0.79128 1.65715 1.17188 1.16883 1.27729 1.23231 0.91906 0.91200 0.98737 1.44155 1.01741 1.06972 1.80442 1.21157 0.98347 0.79343 0.96779 0.89385 1.21728 0.91950 1.02285 0.99483 1.21356 1.01552 1.00874 0.90980 1.30251 1.13732 1.14458 1.09630 0.83965 1.08117 0.76625 0.76842 0.78560 1.30290 1.12195 1.14523 1.23629 1.93620 1.84535 1.29007 1.85848 1.93620 1.36640 1.84832 1.78336 1.21434 0.90978 1.03240 0.99136 1.21993 0.99475 1.00687 0.94879 1.83875 0.96543 1.10651 1.74313 0.90941 0.92528 0.89350 0.90147 0.76677 1.17542 1.18913 0.74848 0.89859 0.89029 0.90325 0.89123 0.85130 0.85014 0.85166 0.90093 0.89438 0.90471 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.08 8.96 36.00 0.32 0.24 16 2 C -0.23 -0.77 6.50 -36.03 -0.23 -1.00 16 3 C 0.10 0.45 5.95 -84.18 -0.50 -0.05 16 4 C -0.04 -0.06 2.81 36.01 0.10 0.05 16 5 O -0.54 0.01 9.86 -35.23 -0.35 -0.34 16 6 Si 0.71 1.16 32.08 -169.99 -5.45 -4.30 16 7 N -0.55 -2.94 8.95 -11.36 -0.10 -3.04 16 8 C 0.32 0.98 8.22 -87.67 -0.72 0.26 16 9 N -0.69 -0.30 4.38 -55.78 -0.24 -0.55 16 10 C 0.15 -0.34 2.74 -67.93 -0.19 -0.53 16 11 H 0.09 -0.21 7.25 -51.93 -0.38 -0.59 16 12 C -0.12 0.40 5.61 -26.73 -0.15 0.25 16 13 C -0.11 0.28 5.04 -26.73 -0.13 0.14 16 14 C -0.57 2.05 2.58 -26.73 -0.07 1.98 16 15 H 0.14 -0.90 8.14 -51.92 -0.42 -1.32 16 16 S 2.42 -2.46 4.88 -107.50 -0.52 -2.99 16 17 C -0.66 2.64 10.17 101.05 1.03 3.66 16 18 O -0.93 -2.86 17.91 -57.83 -1.04 -3.89 16 19 O -0.94 -2.73 18.10 -57.83 -1.05 -3.77 16 20 C -0.11 0.37 4.80 -26.73 -0.13 0.24 16 21 C -0.13 0.43 5.62 -26.73 -0.15 0.28 16 22 S 0.10 0.17 21.70 -107.50 -2.33 -2.16 16 23 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 24 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 25 H 0.09 0.08 6.62 -51.93 -0.34 -0.26 16 26 H 0.08 0.00 7.96 -51.93 -0.41 -0.42 16 27 H 0.39 -1.97 8.74 45.56 0.40 -1.57 16 28 H -0.25 -1.34 7.11 56.52 0.40 -0.94 16 29 H -0.26 -1.52 7.11 56.52 0.40 -1.12 16 30 H 0.41 0.24 6.99 -40.82 -0.29 -0.05 16 31 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 32 H 0.09 -0.45 8.14 -51.93 -0.42 -0.87 16 33 H 0.08 -0.14 6.51 -51.93 -0.34 -0.48 16 34 H 0.09 -0.25 8.14 -51.93 -0.42 -0.68 16 35 H 0.13 -0.72 6.87 -51.92 -0.36 -1.08 16 36 H 0.13 -0.51 8.14 -51.92 -0.42 -0.93 16 37 H 0.13 -0.77 8.14 -51.92 -0.42 -1.20 16 38 H 0.08 -0.44 6.56 -51.93 -0.34 -0.78 16 39 H 0.09 -0.13 7.52 -51.93 -0.39 -0.52 16 40 H 0.08 -0.19 8.06 -51.93 -0.42 -0.61 16 41 H 0.08 -0.42 8.14 -51.93 -0.42 -0.85 16 LS Contribution 347.43 15.07 5.24 5.24 Total: 0.00 -13.39 347.43 -12.54 -25.93 By element: Atomic # 1 Polarization: -9.78 SS G_CDS: -5.87 Total: -15.65 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -0.82 Total: 5.52 kcal Atomic # 7 Polarization: -3.24 SS G_CDS: -0.35 Total: -3.59 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -2.43 Total: -8.00 kcal Atomic # 14 Polarization: 1.16 SS G_CDS: -5.45 Total: -4.30 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.86 Total: -5.15 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -13.39 -12.54 -25.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14783810_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.410 kcal (2) G-P(sol) polarization free energy of solvation -13.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds