Wall clock time and date at job start Mon Mar 8 2021 07:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33334 * 125.95301 * 2 1 4 4 C 1.50700 * 122.70638 * 359.97438 * 3 2 1 5 5 O 1.42896 * 109.47362 * 329.99892 * 4 3 2 6 6 Si 1.86298 * 109.47053 * 209.99981 * 4 3 2 7 7 N 1.32120 * 114.58217 * 180.02562 * 3 2 1 8 8 C 1.29691 * 116.86276 * 359.97438 * 7 3 2 9 9 N 1.38615 * 124.94507 * 179.97438 * 8 7 3 10 10 C 1.46502 * 119.99601 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47150 * 35.00098 * 10 9 8 12 12 C 1.53008 * 109.46784 * 154.99915 * 10 9 8 13 13 C 1.52997 * 109.47033 * 59.99738 * 12 10 9 14 14 C 1.52998 * 109.47123 * 60.00106 * 13 12 10 15 15 H 1.09003 * 109.47598 * 59.99699 * 14 13 12 16 16 S 1.81399 * 109.47320 * 179.97438 * 14 13 12 17 17 C 1.81404 * 101.92308 * 180.02562 * 16 14 13 18 18 O 1.42102 * 108.57907 * 65.51234 * 16 14 13 19 19 O 1.42104 * 108.57735 * 294.48838 * 16 14 13 20 20 C 1.52998 * 109.47110 * 299.99849 * 14 13 12 21 21 C 1.52998 * 109.47163 * 274.99681 * 10 9 8 22 22 S 1.70958 * 110.10346 * 0.24401 * 8 7 3 23 23 H 1.08998 * 109.47345 * 90.00276 * 1 2 3 24 24 H 1.09004 * 109.47068 * 210.00196 * 1 2 3 25 25 H 1.09004 * 109.47569 * 329.99917 * 1 2 3 26 26 H 1.09002 * 109.47211 * 90.00292 * 4 3 2 27 27 H 0.96696 * 114.00058 * 179.97438 * 5 4 3 28 28 H 1.48502 * 110.00285 * 298.68586 * 6 4 3 29 29 H 1.48503 * 110.00193 * 60.00237 * 6 4 3 30 30 H 0.96997 * 119.99875 * 0.02562 * 9 8 7 31 31 H 1.09004 * 109.46698 * 299.99965 * 12 10 9 32 32 H 1.08994 * 109.46949 * 179.97438 * 12 10 9 33 33 H 1.08998 * 109.47655 * 300.00020 * 13 12 10 34 34 H 1.08997 * 109.46950 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.47124 * 299.99874 * 17 16 14 36 36 H 1.09001 * 109.46975 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.47147 * 59.99959 * 17 16 14 38 38 H 1.09007 * 109.47235 * 179.97438 * 20 14 13 39 39 H 1.09002 * 109.47408 * 299.99674 * 20 14 13 40 40 H 1.08997 * 109.46824 * 60.00156 * 21 10 9 41 41 H 1.08997 * 109.47116 * 180.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4815 2.5020 -0.6747 6 14 2.9325 3.6147 -0.8787 7 7 3.5850 0.8188 -0.0005 8 6 3.9314 -0.4309 -0.0005 9 7 5.2384 -0.8926 -0.0015 10 6 5.5065 -2.3329 -0.0007 11 1 4.7448 -2.8445 -0.5890 12 6 6.8845 -2.5954 -0.6117 13 6 7.9537 -1.8771 0.2141 14 6 7.9249 -2.4005 1.6515 15 1 8.1244 -3.4721 1.6521 16 16 9.1931 -1.5495 2.6303 17 6 8.9815 -2.3126 4.2624 18 8 8.8456 -0.1748 2.7243 19 8 10.4718 -1.9090 2.1253 20 6 6.5470 -2.1380 2.2624 21 6 5.4778 -2.8562 1.4367 22 16 2.5413 -1.4260 -0.0065 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5139 26 1 1.6088 2.8217 1.0270 27 1 0.0690 3.3757 -0.7129 28 1 4.2370 3.6285 -0.1691 29 1 3.1218 3.1637 -2.2808 30 1 5.9755 -0.2620 -0.0019 31 1 6.9049 -2.2225 -1.6357 32 1 7.0842 -3.6669 -0.6107 33 1 7.7542 -0.8056 0.2136 34 1 8.9354 -2.0646 -0.2209 35 1 7.9689 -2.1281 4.6213 36 1 9.6990 -1.8817 4.9607 37 1 9.1498 -3.3868 4.1858 38 1 6.5264 -2.5112 3.2863 39 1 6.3475 -1.0664 2.2619 40 1 4.4961 -2.6691 1.8718 41 1 5.6777 -3.9277 1.4373 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14783810_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:01:13 Heat of formation + Delta-G solvation = -56.391142 kcal Electronic energy + Delta-G solvation = -25250.131274 eV Core-core repulsion = 21578.614692 eV Total energy + Delta-G solvation = -3671.516582 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.24208 -40.30861 -38.11331 -37.68470 -37.13818 -35.80609 -33.05270 -32.21329 -31.12018 -30.19409 -29.05406 -25.70193 -24.60391 -24.23926 -23.81637 -21.05243 -20.47004 -19.84026 -19.17398 -18.14074 -18.01380 -17.50575 -17.20395 -17.02506 -16.59665 -16.39917 -16.03333 -15.64552 -15.32841 -15.11965 -14.78174 -14.35193 -14.20314 -14.02095 -14.01436 -13.90711 -13.76863 -13.53280 -13.43202 -13.34099 -13.19172 -13.12853 -12.92380 -12.79087 -12.39415 -12.32000 -12.08829 -11.84689 -11.81461 -11.65654 -11.15934 -10.93155 -10.75873 -10.35780 -10.07076 -8.70510 -5.00036 -1.02526 -0.09716 0.04653 0.64647 1.26015 1.65688 1.75558 1.76291 1.85356 2.19029 2.62782 2.94321 3.11275 3.31394 3.41457 3.63584 3.79607 3.89353 3.95669 4.01155 4.06404 4.10961 4.17599 4.26069 4.30068 4.32424 4.41238 4.46159 4.64046 4.69626 4.79129 4.83406 4.86166 4.91320 4.97296 5.00559 5.04777 5.08165 5.14276 5.32498 5.60410 6.14080 6.78925 6.93356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.245 4.245 3 C 0.072 3.928 4 C -0.032 4.032 5 O -0.550 6.550 6 Si 0.806 3.194 7 N -0.591 5.591 8 C 0.307 3.693 9 N -0.688 5.688 10 C 0.141 3.859 11 H 0.093 0.907 12 C -0.109 4.109 13 C -0.120 4.120 14 C -0.548 4.548 15 H 0.183 0.817 16 S 2.402 3.598 17 C -0.642 4.642 18 O -0.990 6.990 19 O -0.988 6.988 20 C -0.115 4.115 21 C -0.128 4.128 22 S 0.136 5.864 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.408 0.592 28 H -0.308 1.308 29 H -0.323 1.323 30 H 0.407 0.593 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.152 0.848 36 H 0.131 0.869 37 H 0.160 0.840 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -5.392 2.941 7.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.368 4.368 3 C -0.056 4.056 4 C -0.144 4.144 5 O -0.360 6.360 6 Si 0.715 3.285 7 N -0.320 5.320 8 C -0.064 4.064 9 N -0.329 5.329 10 C 0.037 3.963 11 H 0.111 0.889 12 C -0.148 4.148 13 C -0.158 4.158 14 C -0.660 4.660 15 H 0.200 0.800 16 S 2.592 3.408 17 C -0.794 4.794 18 O -0.987 6.987 19 O -0.985 6.985 20 C -0.154 4.154 21 C -0.167 4.167 22 S 0.385 5.615 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.112 0.888 26 H 0.118 0.882 27 H 0.260 0.740 28 H -0.236 1.236 29 H -0.253 1.253 30 H 0.246 0.754 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.170 0.830 36 H 0.149 0.851 37 H 0.178 0.822 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.128 -6.143 2.201 7.237 hybrid contribution 0.048 0.373 0.283 0.471 sum -3.080 -5.770 2.484 6.997 Atomic orbital electron populations 1.20114 0.84945 1.03246 1.02808 1.25531 1.02626 0.92885 1.15794 1.19419 0.86477 0.96688 1.03027 1.23894 0.93465 0.94600 1.02473 1.86417 1.32852 1.37913 1.78855 0.95460 0.76344 0.82810 0.73926 1.65772 1.18184 1.18459 1.29626 1.23577 0.93194 0.91319 0.98272 1.44464 1.00808 1.08221 1.79414 1.21460 0.99067 0.77680 0.98111 0.88929 1.21732 0.90702 1.03597 0.98733 1.21444 1.02022 1.00237 0.92136 1.30050 1.12050 1.15981 1.07877 0.79997 1.08071 0.76322 0.76290 0.80092 1.30135 1.13590 1.15807 1.19886 1.93550 1.85103 1.32992 1.87042 1.93553 1.39701 1.85239 1.79976 1.21533 0.90808 1.02052 1.00978 1.22022 0.98976 1.02244 0.93503 1.83560 0.94964 1.09209 1.73798 0.91213 0.91446 0.88841 0.88156 0.74020 1.23648 1.25259 0.75423 0.90440 0.86389 0.92141 0.89108 0.82999 0.85070 0.82196 0.87143 0.91965 0.91170 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.12 8.96 71.23 0.64 0.52 16 2 C -0.25 -1.73 6.50 24.57 0.16 -1.57 16 3 C 0.07 0.72 5.95 41.41 0.25 0.97 16 4 C -0.03 -0.11 2.81 71.24 0.20 0.09 16 5 O -0.55 0.28 9.86 -148.98 -1.47 -1.19 16 6 Si 0.81 4.26 32.08 68.60 2.20 6.46 16 7 N -0.59 -7.60 8.95 -189.86 -1.70 -9.30 16 8 C 0.31 2.30 8.22 179.32 1.47 3.77 16 9 N -0.69 -1.53 4.38 -330.39 -1.45 -2.98 16 10 C 0.14 -0.72 2.74 44.99 0.12 -0.60 16 11 H 0.09 -0.55 7.25 -2.39 -0.02 -0.56 16 12 C -0.11 0.82 5.61 30.60 0.17 1.00 16 13 C -0.12 0.54 5.04 30.59 0.15 0.70 16 14 C -0.55 4.43 2.58 30.59 0.08 4.51 16 15 H 0.18 -2.92 8.14 -2.39 -0.02 -2.94 16 16 S 2.40 -2.63 4.88 -56.49 -0.28 -2.90 16 17 C -0.64 6.21 10.17 113.37 1.15 7.36 16 18 O -0.99 -8.88 17.91 -127.37 -2.28 -11.16 16 19 O -0.99 -7.42 18.10 -127.37 -2.30 -9.72 16 20 C -0.12 0.90 4.80 30.59 0.15 1.05 16 21 C -0.13 1.09 5.62 30.59 0.17 1.26 16 22 S 0.14 0.47 21.70 -56.49 -1.23 -0.75 16 23 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 24 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 25 H 0.09 0.10 6.62 -2.38 -0.02 0.09 16 26 H 0.10 -0.05 7.96 -2.39 -0.02 -0.07 16 27 H 0.41 -4.66 8.74 -74.06 -0.65 -5.31 16 28 H -0.31 -4.46 7.11 99.48 0.71 -3.76 16 29 H -0.32 -4.85 7.11 99.48 0.71 -4.14 16 30 H 0.41 1.56 6.99 -92.71 -0.65 0.92 16 31 H 0.08 -0.47 8.14 -2.38 -0.02 -0.49 16 32 H 0.12 -1.47 8.14 -2.39 -0.02 -1.49 16 33 H 0.06 -0.05 6.51 -2.39 -0.02 -0.07 16 34 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.15 -2.07 6.87 -2.39 -0.02 -2.09 16 36 H 0.13 -1.12 8.14 -2.39 -0.02 -1.14 16 37 H 0.16 -2.45 8.14 -2.39 -0.02 -2.47 16 38 H 0.11 -1.52 6.56 -2.38 -0.02 -1.54 16 39 H 0.06 -0.12 7.52 -2.39 -0.02 -0.14 16 40 H 0.07 -0.44 8.06 -2.39 -0.02 -0.46 16 41 H 0.11 -1.61 8.14 -2.39 -0.02 -1.63 16 Total: 0.00 -36.10 347.43 -3.98 -40.08 By element: Atomic # 1 Polarization: -27.39 SS G_CDS: -0.19 Total: -27.58 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 4.72 Total: 19.05 kcal Atomic # 7 Polarization: -9.14 SS G_CDS: -3.15 Total: -12.28 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -6.06 Total: -22.08 kcal Atomic # 14 Polarization: 4.26 SS G_CDS: 2.20 Total: 6.46 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -1.50 Total: -3.65 kcal Total: -36.10 -3.98 -40.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14783810_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.308 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds