Wall clock time and date at job start Mon Mar 8 2021 07:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42093 * 108.57929 * 2 1 4 4 O 1.42103 * 108.57874 * 228.97624 * 2 1 3 5 5 C 1.81400 * 101.92219 * 114.48912 * 2 1 3 6 6 H 1.09005 * 109.47247 * 65.00041 * 5 2 1 7 7 C 1.52996 * 109.47011 * 184.99620 * 5 2 1 8 8 C 1.53002 * 109.47065 * 179.97438 * 7 5 2 9 9 C 1.53001 * 109.47147 * 300.00154 * 8 7 5 10 10 H 1.08999 * 109.46935 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.47193 * 299.99945 * 9 8 7 12 12 C 1.39142 * 119.99716 * 205.27811 * 11 9 8 13 13 N 1.32337 * 119.72251 * 359.71922 * 12 11 9 14 14 C 1.32004 * 121.64815 * 179.97438 * 13 12 11 15 15 C 1.37983 * 120.90205 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.32381 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.46904 * 120.00116 * 16 15 14 18 18 Si 1.86296 * 109.47463 * 0.02562 * 16 15 14 19 19 C 1.38903 * 119.34620 * 359.97438 * 15 14 13 20 20 C 1.38442 * 118.48495 * 359.74965 * 19 15 14 21 21 F 1.35103 * 120.47474 * 180.27021 * 20 19 15 22 22 C 1.52999 * 109.46944 * 60.00148 * 9 8 7 23 23 C 1.53001 * 109.46992 * 299.99510 * 22 9 8 24 24 H 1.09005 * 109.46727 * 305.50986 * 1 2 3 25 25 H 1.09003 * 109.47246 * 65.50802 * 1 2 3 26 26 H 1.08998 * 109.47361 * 185.51383 * 1 2 3 27 27 H 1.09005 * 109.47296 * 60.00173 * 7 5 2 28 28 H 1.08998 * 109.47864 * 299.99940 * 7 5 2 29 29 H 1.09004 * 109.47137 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47031 * 60.00519 * 8 7 5 31 31 H 0.97001 * 119.99790 * 24.99549 * 11 9 8 32 32 H 1.08004 * 119.54799 * 179.97438 * 14 13 12 33 33 H 1.08996 * 109.46913 * 239.99482 * 16 15 14 34 34 H 0.96705 * 113.99589 * 299.99875 * 17 16 15 35 35 H 1.48499 * 110.00219 * 180.02562 * 18 16 15 36 36 H 1.48500 * 109.99984 * 301.32193 * 18 16 15 37 37 H 1.08001 * 120.75621 * 180.02562 * 19 15 14 38 38 H 1.08996 * 109.47098 * 60.00014 * 22 9 8 39 39 H 1.09001 * 109.46823 * 179.97438 * 22 9 8 40 40 H 1.08996 * 109.47314 * 300.00650 * 23 22 9 41 41 H 1.08995 * 109.46927 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.8388 -1.7679 1.6343 7 6 3.7001 -0.7052 1.8512 8 6 4.0161 -1.3251 3.2138 9 6 3.3120 -0.5269 4.3129 10 1 3.5368 -0.9689 5.2836 11 7 3.7824 0.8602 4.2867 12 6 3.7266 1.6357 5.4406 13 7 3.2424 1.1163 6.5574 14 6 3.1722 1.8173 7.6737 15 6 3.6041 3.1271 7.7164 16 6 3.5175 3.9155 8.9979 17 8 4.8263 4.3371 9.3871 18 14 2.7864 2.8461 10.3368 19 6 4.1196 3.7117 6.5667 20 6 4.1864 2.9508 5.4120 21 9 4.6856 3.4774 4.2724 22 6 1.8007 -0.5576 4.0769 23 6 1.4846 0.0625 2.7143 24 1 -0.3633 0.5970 0.8366 25 1 -0.3634 0.4260 -0.9352 26 1 -0.3634 -1.0229 0.0987 27 1 4.0500 0.3270 1.8321 28 1 4.2018 -1.2734 1.0680 29 1 5.0928 -1.3030 3.3822 30 1 3.6662 -2.3573 3.2333 31 1 4.1366 1.2368 3.4659 32 1 2.7704 1.3596 8.5657 33 1 2.8848 4.7896 8.8445 34 1 5.4443 3.6095 9.5409 35 1 2.6951 3.6123 11.6056 36 1 1.4382 2.3744 9.9306 37 1 4.4646 4.7351 6.5745 38 1 1.4507 -1.5896 4.0965 39 1 1.2990 0.0107 4.8602 40 1 1.8347 1.0945 2.6948 41 1 0.4079 0.0411 2.5464 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14783810_17656566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:01:18 Heat of formation + Delta-G solvation = -99.516105 kcal Electronic energy + Delta-G solvation = -27196.673632 eV Core-core repulsion = 23120.218408 eV Total energy + Delta-G solvation = -4076.455224 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.109 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -49.83811 -41.56543 -40.24392 -38.05002 -37.94587 -37.06205 -35.81269 -33.26298 -32.51898 -32.17646 -30.61370 -30.15561 -26.52290 -25.24955 -24.02459 -23.92556 -23.02005 -20.78374 -19.87842 -19.52893 -18.46486 -18.24700 -18.08820 -17.58589 -17.15574 -17.01938 -16.97573 -16.47181 -16.07797 -16.05368 -15.94676 -15.41525 -15.26181 -14.95078 -14.65459 -14.36932 -14.32284 -14.16682 -14.06111 -13.97452 -13.68019 -13.45573 -13.31911 -13.11515 -13.02020 -12.78972 -12.61746 -12.46145 -12.14843 -12.10287 -12.00841 -11.80617 -11.31560 -10.98005 -10.71727 -10.64641 -10.47011 -8.77837 -5.11749 -1.11217 -0.07201 0.11836 1.20295 1.54499 1.61818 1.90709 1.93658 2.52318 2.55174 2.84252 3.05187 3.17045 3.24862 3.26574 3.39562 3.56710 3.59152 3.69135 3.72565 3.83055 3.85664 3.92152 3.96070 3.99370 4.14817 4.20038 4.28272 4.39625 4.46677 4.51465 4.54938 4.68170 4.69374 4.80056 4.80894 4.85450 4.96259 4.97550 5.04122 5.37893 5.94244 6.15129 6.50603 6.93251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.416 3.584 3 O -0.934 6.934 4 O -0.938 6.938 5 C -0.570 4.570 6 H 0.142 0.858 7 C -0.109 4.109 8 C -0.120 4.120 9 C 0.155 3.845 10 H 0.099 0.901 11 N -0.712 5.712 12 C 0.391 3.609 13 N -0.511 5.511 14 C 0.146 3.854 15 C -0.210 4.210 16 C -0.055 4.055 17 O -0.540 6.540 18 Si 0.687 3.313 19 C -0.038 4.038 20 C -0.020 4.020 21 F -0.132 7.132 22 C -0.122 4.122 23 C -0.111 4.111 24 H 0.130 0.870 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.412 0.588 32 H 0.162 0.838 33 H 0.115 0.885 34 H 0.380 0.620 35 H -0.252 1.252 36 H -0.254 1.254 37 H 0.149 0.851 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 -4.408 3.759 6.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.599 3.401 3 O -0.932 6.932 4 O -0.936 6.936 5 C -0.679 4.679 6 H 0.160 0.840 7 C -0.147 4.147 8 C -0.159 4.159 9 C 0.051 3.949 10 H 0.117 0.883 11 N -0.347 5.347 12 C 0.153 3.847 13 N -0.228 5.228 14 C -0.011 4.011 15 C -0.215 4.215 16 C -0.167 4.167 17 O -0.346 6.346 18 Si 0.588 3.412 19 C -0.064 4.064 20 C -0.046 4.046 21 F -0.111 7.111 22 C -0.162 4.162 23 C -0.150 4.150 24 H 0.149 0.851 25 H 0.149 0.851 26 H 0.148 0.852 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.251 0.749 32 H 0.179 0.821 33 H 0.132 0.868 34 H 0.227 0.773 35 H -0.176 1.176 36 H -0.179 1.179 37 H 0.167 0.833 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.458 -4.669 3.525 6.346 hybrid contribution -0.272 1.246 -0.525 1.379 sum -2.730 -3.423 3.000 5.308 Atomic orbital electron populations 1.30301 1.26668 1.11725 1.12016 1.08108 0.78529 0.76013 0.77469 1.93609 1.78968 1.34247 1.86341 1.93618 1.79117 1.67088 1.53735 1.30237 1.05324 1.12668 1.19643 0.84026 1.21353 0.90508 1.03013 0.99838 1.21792 1.01443 0.99990 0.92682 1.20954 0.93105 0.80745 1.00141 0.88312 1.44789 1.68251 1.12497 1.09145 1.18435 0.91466 0.86676 0.88170 1.67290 1.20430 1.37113 0.97986 1.22329 0.93849 0.90008 0.94921 1.20924 1.07106 0.96415 0.97098 1.24861 0.90045 1.03696 0.98061 1.86516 1.20996 1.36902 1.90153 0.94840 0.83210 0.84909 0.78218 1.21281 0.94781 1.00525 0.89823 1.18033 1.09027 0.92832 0.84731 1.91511 1.85621 1.86352 1.47633 1.21874 0.96381 1.01860 0.96089 1.21481 0.99726 0.99662 0.94101 0.85137 0.85089 0.85190 0.90397 0.89512 0.90194 0.89458 0.74941 0.82111 0.86755 0.77296 1.17647 1.17920 0.83330 0.90397 0.90431 0.89895 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.55 10.01 101.05 1.01 3.56 16 2 S 2.42 -2.50 4.90 -107.50 -0.53 -3.03 16 3 O -0.93 -2.62 18.06 -57.83 -1.04 -3.67 16 4 O -0.94 -2.78 18.10 -57.83 -1.05 -3.83 16 5 C -0.57 1.96 2.62 -26.73 -0.07 1.89 16 6 H 0.14 -0.82 8.14 -51.92 -0.42 -1.24 16 7 C -0.11 0.28 5.03 -26.73 -0.13 0.15 16 8 C -0.12 0.40 5.61 -26.73 -0.15 0.25 16 9 C 0.16 -0.35 2.80 -67.93 -0.19 -0.54 16 10 H 0.10 -0.16 7.54 -51.93 -0.39 -0.55 16 11 N -0.71 0.55 4.38 -53.85 -0.24 0.32 16 12 C 0.39 0.31 7.47 -154.86 -1.16 -0.85 16 13 N -0.51 -0.24 9.20 -12.36 -0.11 -0.35 16 14 C 0.15 -0.12 9.84 -17.57 -0.17 -0.30 16 15 C -0.21 0.15 5.40 -104.47 -0.56 -0.41 16 16 C -0.06 0.08 2.84 36.01 0.10 0.18 16 17 O -0.54 0.40 12.78 -35.23 -0.45 -0.05 16 18 Si 0.69 -1.61 29.82 -169.99 -5.07 -6.67 16 19 C -0.04 -0.02 9.75 -39.26 -0.38 -0.40 16 20 C -0.02 -0.03 7.35 -39.09 -0.29 -0.32 16 21 F -0.13 -0.34 16.65 2.25 0.04 -0.30 16 22 C -0.12 0.35 5.62 -26.73 -0.15 0.20 16 23 C -0.11 0.37 4.75 -26.73 -0.13 0.24 16 24 H 0.13 -0.70 6.77 -51.92 -0.35 -1.05 16 25 H 0.13 -0.49 8.14 -51.92 -0.42 -0.91 16 26 H 0.13 -0.74 8.14 -51.93 -0.42 -1.17 16 27 H 0.08 -0.17 6.50 -51.93 -0.34 -0.50 16 28 H 0.09 -0.24 8.14 -51.93 -0.42 -0.66 16 29 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 30 H 0.09 -0.38 8.14 -51.93 -0.42 -0.80 16 31 H 0.41 -0.38 6.34 -40.82 -0.26 -0.64 16 32 H 0.16 -0.49 4.88 -52.48 -0.26 -0.75 16 33 H 0.12 -0.11 7.96 -51.93 -0.41 -0.53 16 34 H 0.38 -1.72 8.70 45.56 0.40 -1.32 16 35 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 36 H -0.25 0.07 7.11 56.52 0.40 0.47 16 37 H 0.15 -0.02 8.06 -52.49 -0.42 -0.44 16 38 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 39 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 40 H 0.08 -0.16 7.60 -51.93 -0.39 -0.56 16 41 H 0.08 -0.41 6.39 -51.93 -0.33 -0.74 16 LS Contribution 343.05 15.07 5.17 5.17 Total: 0.00 -11.12 343.05 -10.89 -22.01 By element: Atomic # 1 Polarization: -7.91 SS G_CDS: -5.34 Total: -13.25 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -2.27 Total: 3.65 kcal Atomic # 7 Polarization: 0.32 SS G_CDS: -0.35 Total: -0.03 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -2.54 Total: -7.54 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.04 Total: -0.30 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: -5.07 Total: -6.67 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -0.53 Total: -3.03 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -11.12 -10.89 -22.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14783810_17656566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.506 kcal (2) G-P(sol) polarization free energy of solvation -11.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds