Wall clock time and date at job start Mon Mar 8 2021 07:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42093 * 108.57929 * 2 1 4 4 O 1.42103 * 108.57874 * 228.97624 * 2 1 3 5 5 C 1.81400 * 101.92219 * 114.48912 * 2 1 3 6 6 H 1.09005 * 109.47247 * 65.00041 * 5 2 1 7 7 C 1.52996 * 109.47011 * 184.99620 * 5 2 1 8 8 C 1.53002 * 109.47065 * 179.97438 * 7 5 2 9 9 C 1.53001 * 109.47147 * 300.00154 * 8 7 5 10 10 H 1.08999 * 109.46935 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.47193 * 299.99945 * 9 8 7 12 12 C 1.39142 * 119.99716 * 205.27811 * 11 9 8 13 13 N 1.32337 * 119.72251 * 359.71922 * 12 11 9 14 14 C 1.32004 * 121.64815 * 179.97438 * 13 12 11 15 15 C 1.37983 * 120.90205 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.32381 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.46904 * 120.00116 * 16 15 14 18 18 Si 1.86296 * 109.47463 * 0.02562 * 16 15 14 19 19 C 1.38903 * 119.34620 * 359.97438 * 15 14 13 20 20 C 1.38442 * 118.48495 * 359.74965 * 19 15 14 21 21 F 1.35103 * 120.47474 * 180.27021 * 20 19 15 22 22 C 1.52999 * 109.46944 * 60.00148 * 9 8 7 23 23 C 1.53001 * 109.46992 * 299.99510 * 22 9 8 24 24 H 1.09005 * 109.46727 * 305.50986 * 1 2 3 25 25 H 1.09003 * 109.47246 * 65.50802 * 1 2 3 26 26 H 1.08998 * 109.47361 * 185.51383 * 1 2 3 27 27 H 1.09005 * 109.47296 * 60.00173 * 7 5 2 28 28 H 1.08998 * 109.47864 * 299.99940 * 7 5 2 29 29 H 1.09004 * 109.47137 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47031 * 60.00519 * 8 7 5 31 31 H 0.97001 * 119.99790 * 24.99549 * 11 9 8 32 32 H 1.08004 * 119.54799 * 179.97438 * 14 13 12 33 33 H 1.08996 * 109.46913 * 239.99482 * 16 15 14 34 34 H 0.96705 * 113.99589 * 299.99875 * 17 16 15 35 35 H 1.48499 * 110.00219 * 180.02562 * 18 16 15 36 36 H 1.48500 * 109.99984 * 301.32193 * 18 16 15 37 37 H 1.08001 * 120.75621 * 180.02562 * 19 15 14 38 38 H 1.08996 * 109.47098 * 60.00014 * 22 9 8 39 39 H 1.09001 * 109.46823 * 179.97438 * 22 9 8 40 40 H 1.08996 * 109.47314 * 300.00650 * 23 22 9 41 41 H 1.08995 * 109.46927 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.8388 -1.7679 1.6343 7 6 3.7001 -0.7052 1.8512 8 6 4.0161 -1.3251 3.2138 9 6 3.3120 -0.5269 4.3129 10 1 3.5368 -0.9689 5.2836 11 7 3.7824 0.8602 4.2867 12 6 3.7266 1.6357 5.4406 13 7 3.2424 1.1163 6.5574 14 6 3.1722 1.8173 7.6737 15 6 3.6041 3.1271 7.7164 16 6 3.5175 3.9155 8.9979 17 8 4.8263 4.3371 9.3871 18 14 2.7864 2.8461 10.3368 19 6 4.1196 3.7117 6.5667 20 6 4.1864 2.9508 5.4120 21 9 4.6856 3.4774 4.2724 22 6 1.8007 -0.5576 4.0769 23 6 1.4846 0.0625 2.7143 24 1 -0.3633 0.5970 0.8366 25 1 -0.3634 0.4260 -0.9352 26 1 -0.3634 -1.0229 0.0987 27 1 4.0500 0.3270 1.8321 28 1 4.2018 -1.2734 1.0680 29 1 5.0928 -1.3030 3.3822 30 1 3.6662 -2.3573 3.2333 31 1 4.1366 1.2368 3.4659 32 1 2.7704 1.3596 8.5657 33 1 2.8848 4.7896 8.8445 34 1 5.4443 3.6095 9.5409 35 1 2.6951 3.6123 11.6056 36 1 1.4382 2.3744 9.9306 37 1 4.4646 4.7351 6.5745 38 1 1.4507 -1.5896 4.0965 39 1 1.2990 0.0107 4.8602 40 1 1.8347 1.0945 2.6948 41 1 0.4079 0.0411 2.5464 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14783810_17656566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:01:18 Heat of formation + Delta-G solvation = -103.481326 kcal Electronic energy + Delta-G solvation = -27196.845577 eV Core-core repulsion = 23120.218408 eV Total energy + Delta-G solvation = -4076.627169 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.95548 -41.51565 -40.07393 -38.07354 -37.87427 -37.09817 -35.70634 -33.23472 -32.35557 -31.99562 -30.42423 -29.96568 -26.44967 -25.19158 -23.80671 -23.75427 -22.98363 -20.60664 -19.80041 -19.48453 -18.41215 -18.21561 -17.98149 -17.54869 -17.07922 -17.03764 -16.93535 -16.36584 -16.02835 -15.90455 -15.85679 -15.39792 -15.10760 -14.71153 -14.60241 -14.33706 -14.09661 -14.00298 -13.94076 -13.79577 -13.56382 -13.27085 -13.20356 -13.11341 -13.08175 -12.64239 -12.51816 -12.23161 -12.11031 -12.04231 -11.76288 -11.64482 -11.15897 -10.81250 -10.70022 -10.64030 -10.39293 -8.73477 -4.95666 -0.97968 -0.07019 0.11901 1.33459 1.67228 1.79504 2.01508 2.01852 2.56203 2.67039 2.99908 3.04844 3.30302 3.40718 3.50180 3.51507 3.67857 3.83172 3.87440 3.94111 4.01935 4.03617 4.10004 4.19815 4.22544 4.39458 4.44036 4.45385 4.48289 4.60354 4.71792 4.77450 4.84436 4.96071 4.98302 5.01589 5.08194 5.11247 5.20290 5.27506 5.43564 6.03864 6.18478 6.79638 6.95321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.406 3.594 3 O -0.987 6.987 4 O -0.988 6.988 5 C -0.547 4.547 6 H 0.176 0.824 7 C -0.119 4.119 8 C -0.113 4.113 9 C 0.152 3.848 10 H 0.095 0.905 11 N -0.711 5.711 12 C 0.386 3.614 13 N -0.518 5.518 14 C 0.149 3.851 15 C -0.208 4.208 16 C -0.062 4.062 17 O -0.557 6.557 18 Si 0.779 3.221 19 C -0.042 4.042 20 C -0.045 4.045 21 F -0.145 7.145 22 C -0.119 4.119 23 C -0.116 4.116 24 H 0.150 0.850 25 H 0.131 0.869 26 H 0.158 0.842 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.410 0.590 32 H 0.185 0.815 33 H 0.108 0.892 34 H 0.396 0.604 35 H -0.299 1.299 36 H -0.276 1.276 37 H 0.149 0.851 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.073 -6.139 4.838 8.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.596 3.404 3 O -0.984 6.984 4 O -0.985 6.985 5 C -0.659 4.659 6 H 0.193 0.807 7 C -0.157 4.157 8 C -0.152 4.152 9 C 0.048 3.952 10 H 0.113 0.887 11 N -0.344 5.344 12 C 0.147 3.853 13 N -0.235 5.235 14 C -0.008 4.008 15 C -0.213 4.213 16 C -0.172 4.172 17 O -0.365 6.365 18 Si 0.684 3.316 19 C -0.068 4.068 20 C -0.072 4.072 21 F -0.124 7.124 22 C -0.158 4.158 23 C -0.154 4.154 24 H 0.169 0.831 25 H 0.149 0.851 26 H 0.176 0.824 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.248 0.752 32 H 0.202 0.798 33 H 0.126 0.874 34 H 0.246 0.754 35 H -0.227 1.227 36 H -0.202 1.202 37 H 0.166 0.834 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.722 -6.404 4.540 8.688 hybrid contribution 0.102 1.809 -0.777 1.972 sum -3.620 -4.595 3.763 6.956 Atomic orbital electron populations 1.30161 1.22442 1.14058 1.13026 1.07990 0.79993 0.74534 0.77910 1.93542 1.80856 1.36672 1.87310 1.93552 1.80986 1.67612 1.56397 1.30043 1.04817 1.14127 1.16904 0.80674 1.21447 0.91291 1.02517 1.00492 1.21771 1.01309 1.00628 0.91480 1.21096 0.93916 0.79866 1.00338 0.88662 1.44932 1.67830 1.13038 1.08641 1.18559 0.91359 0.86619 0.88745 1.67367 1.20729 1.37253 0.98131 1.22719 0.92902 0.89885 0.95299 1.20973 1.06874 0.96578 0.96897 1.25042 0.90041 1.03795 0.98308 1.86480 1.21542 1.38380 1.90135 0.93782 0.80896 0.82851 0.74090 1.21397 0.94765 1.00589 0.90045 1.18248 1.10555 0.93614 0.84733 1.91469 1.86001 1.86599 1.48369 1.21858 0.95483 1.02906 0.95586 1.21571 1.01348 0.98641 0.93882 0.83137 0.85071 0.82419 0.91642 0.89535 0.90464 0.87531 0.75181 0.79829 0.87416 0.75437 1.22723 1.20249 0.83350 0.88252 0.91636 0.91712 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 5.97 10.01 113.37 1.14 7.10 16 2 S 2.41 -3.15 4.90 -56.49 -0.28 -3.43 16 3 O -0.99 -7.83 18.06 -127.37 -2.30 -10.13 16 4 O -0.99 -7.32 18.10 -127.37 -2.31 -9.62 16 5 C -0.55 4.22 2.62 30.59 0.08 4.30 16 6 H 0.18 -2.52 8.14 -2.39 -0.02 -2.54 16 7 C -0.12 0.57 5.03 30.59 0.15 0.73 16 8 C -0.11 0.83 5.61 30.60 0.17 1.00 16 9 C 0.15 -0.76 2.80 44.99 0.13 -0.64 16 10 H 0.10 -0.38 7.54 -2.39 -0.02 -0.40 16 11 N -0.71 0.48 4.38 -324.28 -1.42 -0.94 16 12 C 0.39 0.93 7.47 133.09 0.99 1.92 16 13 N -0.52 -0.41 9.20 -193.03 -1.78 -2.19 16 14 C 0.15 -0.33 9.84 84.61 0.83 0.50 16 15 C -0.21 0.27 5.40 -19.76 -0.11 0.17 16 16 C -0.06 0.17 2.84 71.24 0.20 0.37 16 17 O -0.56 0.85 12.78 -148.98 -1.90 -1.06 16 18 Si 0.78 -4.08 29.82 68.60 2.05 -2.03 16 19 C -0.04 -0.08 9.75 22.48 0.22 0.13 16 20 C -0.05 -0.20 7.35 22.59 0.17 -0.03 16 21 F -0.15 -1.08 16.65 44.97 0.75 -0.33 16 22 C -0.12 0.86 5.62 30.59 0.17 1.03 16 23 C -0.12 0.89 4.75 30.59 0.15 1.04 16 24 H 0.15 -1.96 6.77 -2.39 -0.02 -1.97 16 25 H 0.13 -1.10 8.14 -2.39 -0.02 -1.12 16 26 H 0.16 -2.29 8.14 -2.39 -0.02 -2.31 16 27 H 0.06 -0.15 6.50 -2.38 -0.02 -0.16 16 28 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.08 -0.50 8.14 -2.38 -0.02 -0.52 16 30 H 0.11 -1.16 8.14 -2.38 -0.02 -1.18 16 31 H 0.41 -0.02 6.34 -92.71 -0.59 -0.61 16 32 H 0.19 -1.41 4.88 -2.91 -0.01 -1.42 16 33 H 0.11 -0.17 7.96 -2.39 -0.02 -0.19 16 34 H 0.40 -3.76 8.70 -74.05 -0.64 -4.40 16 35 H -0.30 -0.86 7.11 99.48 0.71 -0.15 16 36 H -0.28 0.42 7.11 99.48 0.71 1.13 16 37 H 0.15 0.19 8.06 -2.91 -0.02 0.17 16 38 H 0.10 -1.11 8.14 -2.39 -0.02 -1.13 16 39 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.06 -0.22 7.60 -2.39 -0.02 -0.24 16 41 H 0.10 -1.37 6.39 -2.39 -0.02 -1.39 16 Total: 0.00 -28.23 343.05 -3.01 -31.23 By element: Atomic # 1 Polarization: -19.03 SS G_CDS: -0.11 Total: -19.14 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 4.29 Total: 17.64 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -3.20 Total: -3.12 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -6.51 Total: -20.81 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.75 Total: -0.33 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.05 Total: -2.03 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -0.28 Total: -3.43 kcal Total: -28.23 -3.01 -31.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14783810_17656566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.247 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds