Wall clock time and date at job start Mon Mar 8 2021 05:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38409 * 120.00056 * 2 1 4 4 N 1.32490 * 119.21406 * 0.02562 * 3 2 1 5 5 C 1.32277 * 120.74084 * 179.97438 * 4 3 2 6 6 C 1.38601 * 119.19415 * 359.97438 * 5 4 3 7 7 C 1.50707 * 120.72043 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46442 * 65.00331 * 7 6 5 9 9 Si 1.86293 * 109.47256 * 184.99897 * 7 6 5 10 10 C 1.38603 * 118.56084 * 0.25196 * 6 5 4 11 11 N 1.32272 * 119.19766 * 359.51678 * 10 6 5 12 12 C 1.46501 * 120.00031 * 180.02562 * 2 1 3 13 13 H 1.09009 * 112.84657 * 191.19479 * 12 2 1 14 14 C 1.53784 * 113.61379 * 322.49559 * 12 2 1 15 15 C 1.53781 * 87.07855 * 89.11993 * 14 12 2 16 16 H 1.08998 * 113.69257 * 270.87749 * 15 14 12 17 17 C 1.50703 * 113.61372 * 139.98085 * 15 14 12 18 18 C 1.38232 * 119.99626 * 322.22838 * 17 15 14 19 19 C 1.38242 * 119.99485 * 179.76640 * 18 17 15 20 20 C 1.38238 * 120.00036 * 0.48397 * 19 18 17 21 21 C 1.38233 * 119.99835 * 359.79279 * 20 19 18 22 22 C 1.38237 * 119.99606 * 142.50170 * 17 15 14 23 23 C 1.53771 * 113.61783 * 59.99732 * 12 2 1 24 24 H 1.08996 * 109.47570 * 89.99514 * 1 2 3 25 25 H 1.09004 * 109.46790 * 209.99414 * 1 2 3 26 26 H 1.08995 * 109.47413 * 329.99381 * 1 2 3 27 27 H 1.08002 * 120.40129 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.47345 * 305.00401 * 7 6 5 29 29 H 0.96700 * 114.00311 * 60.00230 * 8 7 6 30 30 H 1.48506 * 109.99973 * 180.02562 * 9 7 6 31 31 H 1.48493 * 110.00375 * 301.32185 * 9 7 6 32 32 H 1.08002 * 120.39772 * 179.71895 * 10 6 5 33 33 H 1.09004 * 113.61129 * 203.66879 * 14 12 2 34 34 H 1.08998 * 113.61420 * 334.57342 * 14 12 2 35 35 H 1.07997 * 120.00344 * 0.02562 * 18 17 15 36 36 H 1.07998 * 119.99718 * 180.25480 * 19 18 17 37 37 H 1.07996 * 119.99923 * 179.76881 * 20 19 18 38 38 H 1.08005 * 119.99944 * 179.97438 * 21 20 19 39 39 H 1.07992 * 120.00351 * 0.02562 * 22 17 15 40 40 H 1.09005 * 113.62024 * 25.43057 * 23 12 2 41 41 H 1.09005 * 113.61911 * 156.25397 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1570 1.1987 0.0000 4 7 1.4789 2.3369 0.0005 5 6 2.1095 3.4996 0.0010 6 6 3.4954 3.5171 0.0016 7 6 4.2490 4.8222 0.0016 8 8 3.9935 5.5195 1.2225 9 14 6.0748 4.4852 -0.1506 10 6 4.1733 2.3081 -0.0038 11 7 3.4818 1.1806 0.0005 12 6 2.1975 -1.2687 -0.0006 13 1 3.2625 -1.1426 0.1945 14 6 1.5374 -2.3615 0.8568 15 6 0.7441 -2.7578 -0.3996 16 1 -0.1986 -2.2217 -0.5095 17 6 0.5942 -4.2472 -0.5741 18 6 1.6395 -5.0901 -0.2458 19 6 1.5003 -6.4566 -0.4013 20 6 0.3195 -6.9794 -0.8946 21 6 -0.7237 -6.1360 -1.2283 22 6 -0.5864 -4.7698 -1.0678 23 6 1.8954 -2.1540 -1.2211 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.5513 4.4242 0.0019 28 1 3.9205 5.4315 -0.8404 29 1 4.2614 5.0353 2.0155 30 1 6.8292 5.7644 -0.1512 31 1 6.5288 3.6289 0.9744 32 1 5.2531 2.2871 -0.0081 33 1 2.2323 -3.1303 1.1950 34 1 0.9147 -1.9691 1.6607 35 1 2.5633 -4.6814 0.1362 36 1 2.3154 -7.1155 -0.1409 37 1 0.2121 -8.0467 -1.0196 38 1 -1.6461 -6.5444 -1.6141 39 1 -1.4012 -4.1109 -1.3288 40 1 1.5615 -1.5941 -2.0948 41 1 2.6886 -2.8651 -1.4519 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14797358_12175864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:32:59 Heat of formation + Delta-G solvation = 108.263350 kcal Electronic energy + Delta-G solvation = -23277.468478 eV Core-core repulsion = 19933.122647 eV Total energy + Delta-G solvation = -3344.345831 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.26752 -41.27291 -39.37612 -38.09224 -35.98487 -34.75506 -32.73228 -31.88074 -31.53395 -28.75147 -26.97286 -26.70301 -25.57679 -25.00758 -23.61830 -23.08404 -21.84176 -20.44094 -19.15394 -18.51443 -18.04930 -17.84138 -16.80245 -16.72407 -16.29718 -16.10303 -15.90733 -15.77182 -15.59648 -14.93079 -14.64652 -14.54722 -14.33360 -14.14259 -14.03732 -13.96349 -13.50964 -13.17471 -13.05468 -12.96176 -12.61212 -12.27663 -12.07297 -11.91970 -11.79822 -11.71440 -11.55144 -11.18575 -11.05258 -10.67266 -10.02940 -9.80423 -9.55202 -8.91358 -4.90643 0.02708 0.13587 0.44787 0.51507 1.31976 1.54670 1.60348 1.97933 2.75120 2.85172 3.11685 3.41103 3.45513 3.53991 3.67999 3.70425 3.73414 3.75639 3.97579 4.04100 4.16535 4.20511 4.25097 4.27130 4.31112 4.54412 4.59957 4.61795 4.65045 4.69569 4.74820 4.76753 4.81637 4.91536 4.98088 5.00167 5.13826 5.18218 5.20101 5.34081 5.60111 5.65669 5.71594 5.81006 5.88504 6.14122 6.33452 6.49034 7.19387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.568 5.568 3 C 0.552 3.448 4 N -0.586 5.586 5 C 0.213 3.787 6 C -0.284 4.284 7 C -0.056 4.056 8 O -0.547 6.547 9 Si 0.759 3.241 10 C 0.192 3.808 11 N -0.578 5.578 12 C 0.132 3.868 13 H 0.108 0.892 14 C -0.135 4.135 15 C -0.074 4.074 16 H 0.108 0.892 17 C -0.078 4.078 18 C -0.125 4.125 19 C -0.129 4.129 20 C -0.138 4.138 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.133 4.133 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.183 0.817 28 H 0.131 0.869 29 H 0.385 0.615 30 H -0.299 1.299 31 H -0.279 1.279 32 H 0.186 0.814 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.063 0.937 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 -1.920 -1.323 2.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.282 5.282 3 C 0.197 3.803 4 N -0.308 5.308 5 C 0.046 3.954 6 C -0.293 4.293 7 C -0.166 4.166 8 O -0.355 6.355 9 Si 0.664 3.336 10 C 0.025 3.975 11 N -0.300 5.300 12 C 0.028 3.972 13 H 0.126 0.874 14 C -0.173 4.173 15 C -0.092 4.092 16 H 0.126 0.874 17 C -0.078 4.078 18 C -0.143 4.143 19 C -0.147 4.147 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.172 4.172 24 H 0.075 0.925 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.200 0.800 28 H 0.149 0.851 29 H 0.234 0.766 30 H -0.227 1.227 31 H -0.205 1.205 32 H 0.203 0.797 33 H 0.126 0.874 34 H 0.093 0.907 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.082 0.918 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.599 -2.470 -1.361 2.883 hybrid contribution -0.110 0.855 1.093 1.392 sum 0.489 -1.615 -0.267 1.708 Atomic orbital electron populations 1.21903 0.77042 1.03803 1.02247 1.45876 1.05977 1.00878 1.75505 1.19545 0.85656 0.86786 0.88351 1.68002 1.41355 0.98338 1.23092 1.23183 0.91688 0.95225 0.85343 1.21681 0.96708 0.97754 1.13129 1.24850 1.10492 0.91498 0.89783 1.86588 1.85243 1.47410 1.16234 0.94242 0.71894 0.79286 0.88185 1.23211 1.00809 0.86306 0.87150 1.67938 1.06917 1.32276 1.22897 1.21968 0.97023 0.81093 0.97147 0.87449 1.23506 0.99672 0.97653 0.96487 1.21819 0.99235 0.91141 0.96994 0.87417 1.19875 0.94023 0.95269 0.98646 1.21235 0.99193 0.93412 1.00484 1.21441 0.98231 0.95736 0.99317 1.21446 0.93913 1.00683 0.99596 1.21426 0.99592 0.93848 1.00000 1.21309 0.97866 0.95655 1.00013 1.23439 0.98425 0.98322 0.96969 0.92481 0.88952 0.90939 0.79968 0.85100 0.76587 1.22726 1.20515 0.79747 0.87407 0.90741 0.84725 0.84758 0.85016 0.84967 0.85183 0.91786 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.01 8.84 127.77 1.13 1.12 16 2 N -0.57 -1.74 3.18 -708.68 -2.26 -4.00 16 3 C 0.55 3.59 8.17 261.49 2.14 5.73 16 4 N -0.59 -3.72 9.11 -197.98 -1.80 -5.53 16 5 C 0.21 0.48 10.99 84.71 0.93 1.41 16 6 C -0.28 0.10 5.36 -19.69 -0.11 -0.01 16 7 C -0.06 0.16 2.83 71.24 0.20 0.37 16 8 O -0.55 -0.15 12.85 -148.98 -1.91 -2.07 16 9 Si 0.76 -3.03 29.94 68.60 2.05 -0.97 16 10 C 0.19 0.15 9.92 84.71 0.84 0.99 16 11 N -0.58 -3.14 9.00 -197.99 -1.78 -4.93 16 12 C 0.13 0.03 4.47 45.52 0.20 0.24 16 13 H 0.11 0.21 7.11 -2.38 -0.02 0.19 16 14 C -0.14 0.32 6.67 31.12 0.21 0.52 16 15 C -0.07 0.15 3.31 -11.01 -0.04 0.11 16 16 H 0.11 -0.32 5.51 -2.39 -0.01 -0.33 16 17 C -0.08 -0.05 5.29 -19.86 -0.11 -0.15 16 18 C -0.13 -0.04 8.60 22.27 0.19 0.15 16 19 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 20 C -0.14 -0.19 10.05 22.27 0.22 0.03 16 21 C -0.13 -0.19 10.05 22.27 0.22 0.03 16 22 C -0.13 -0.17 9.71 22.27 0.22 0.05 16 23 C -0.13 0.14 7.21 31.12 0.22 0.36 16 24 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.09 -0.31 4.83 -2.38 -0.01 -0.33 16 26 H 0.07 0.14 7.33 -2.39 -0.02 0.13 16 27 H 0.18 -0.29 8.06 -2.91 -0.02 -0.32 16 28 H 0.13 -0.68 7.96 -2.39 -0.02 -0.70 16 29 H 0.38 -1.79 8.70 -74.06 -0.64 -2.43 16 30 H -0.30 -1.18 7.11 99.48 0.71 -0.47 16 31 H -0.28 0.13 7.03 99.48 0.70 0.83 16 32 H 0.19 -0.81 5.01 -2.91 -0.01 -0.83 16 33 H 0.11 -0.41 6.32 -2.39 -0.02 -0.43 16 34 H 0.07 -0.12 7.36 -2.39 -0.02 -0.14 16 35 H 0.13 -0.41 6.67 -2.91 -0.02 -0.43 16 36 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 37 H 0.13 -0.24 8.06 -2.91 -0.02 -0.26 16 38 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 39 H 0.13 -0.22 8.05 -2.91 -0.02 -0.24 16 40 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 41 H 0.10 -0.19 7.72 -2.38 -0.02 -0.21 16 Total: 0.00 -14.47 330.85 1.45 -13.02 By element: Atomic # 1 Polarization: -7.04 SS G_CDS: 0.44 Total: -6.59 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 6.71 Total: 11.07 kcal Atomic # 7 Polarization: -8.61 SS G_CDS: -5.84 Total: -14.45 kcal Atomic # 8 Polarization: -0.15 SS G_CDS: -1.91 Total: -2.07 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.05 Total: -0.97 kcal Total: -14.47 1.45 -13.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14797358_12175864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.283 kcal (2) G-P(sol) polarization free energy of solvation -14.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds