Wall clock time and date at job start Mon Mar 8 2021 05:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38999 * 119.99611 * 2 1 4 4 N 1.32408 * 119.70761 * 349.39322 * 3 2 1 5 5 C 1.31976 * 121.62098 * 179.73102 * 4 3 2 6 6 C 1.38015 * 120.85570 * 0.54009 * 5 4 3 7 7 C 1.50701 * 120.33730 * 179.72152 * 6 5 4 8 8 O 1.42894 * 109.47810 * 244.72954 * 7 6 5 9 9 Si 1.86305 * 109.46704 * 4.72757 * 7 6 5 10 10 C 1.38889 * 119.33264 * 359.45330 * 6 5 4 11 11 C 1.38294 * 118.50174 * 0.27666 * 10 6 5 12 12 C 1.46492 * 120.00170 * 180.02562 * 2 1 3 13 13 H 1.09003 * 112.84789 * 175.85431 * 12 2 1 14 14 C 1.53786 * 113.61289 * 307.04757 * 12 2 1 15 15 C 1.53788 * 87.07811 * 89.12096 * 14 12 2 16 16 H 1.09000 * 113.61007 * 270.79407 * 15 14 12 17 17 C 1.50693 * 113.61273 * 139.98284 * 15 14 12 18 18 C 1.38242 * 120.00130 * 299.72122 * 17 15 14 19 19 C 1.38235 * 119.99853 * 179.77118 * 18 17 15 20 20 C 1.38238 * 120.00260 * 0.48280 * 19 18 17 21 21 C 1.38238 * 119.99667 * 359.79415 * 20 19 18 22 22 C 1.38232 * 120.00420 * 359.95312 * 21 20 19 23 23 C 1.53775 * 87.08171 * 25.42938 * 15 14 12 24 24 H 1.08995 * 109.47209 * 96.06948 * 1 2 3 25 25 H 1.09006 * 109.46823 * 216.06673 * 1 2 3 26 26 H 1.09004 * 109.47335 * 336.06497 * 1 2 3 27 27 H 1.07994 * 119.56826 * 180.28965 * 5 4 3 28 28 H 1.09001 * 109.47170 * 124.72402 * 7 6 5 29 29 H 0.96704 * 113.99760 * 59.99592 * 8 7 6 30 30 H 1.48500 * 110.00035 * 179.97438 * 9 7 6 31 31 H 1.48494 * 110.00160 * 301.31827 * 9 7 6 32 32 H 1.07999 * 120.74593 * 180.24949 * 10 6 5 33 33 H 1.08004 * 120.45241 * 179.97438 * 11 10 6 34 34 H 1.09002 * 113.61556 * 203.66209 * 14 12 2 35 35 H 1.08988 * 113.61649 * 334.48769 * 14 12 2 36 36 H 1.07997 * 119.99528 * 0.02562 * 18 17 15 37 37 H 1.07997 * 119.99766 * 180.25300 * 19 18 17 38 38 H 1.07995 * 120.00250 * 179.77163 * 20 19 18 39 39 H 1.07999 * 119.99933 * 179.97438 * 21 20 19 40 40 H 1.07991 * 120.00544 * 180.02562 * 22 21 20 41 41 H 1.09001 * 113.61642 * 220.01418 * 23 15 14 42 42 H 1.09007 * 113.61455 * 89.11790 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2038 0.0000 4 7 1.5090 2.3372 -0.2117 5 6 2.1301 3.5017 -0.2146 6 6 3.4923 3.5779 -0.0063 7 6 4.1906 4.9133 -0.0183 8 8 5.1025 4.9644 -1.1173 9 14 2.9286 6.2724 -0.1951 10 6 4.2123 2.4120 0.2200 11 6 3.5334 1.2072 0.2227 12 6 2.1975 -1.2686 -0.0006 13 1 3.2768 -1.1342 -0.0731 14 6 1.7704 -2.2271 1.1237 15 6 0.7149 -2.7749 0.1484 16 1 -0.2359 -2.2436 0.1906 17 6 0.5524 -4.2716 0.2131 18 6 1.6265 -5.0962 -0.0651 19 6 1.4785 -6.4691 -0.0011 20 6 0.2540 -7.0177 0.3314 21 6 -0.8216 -6.1931 0.6040 22 6 -0.6724 -4.8202 0.5451 23 6 1.6359 -2.3038 -0.9894 24 1 -0.3633 -0.1087 -1.0218 25 1 -0.3633 -0.8308 0.6051 26 1 -0.3634 0.9393 0.4169 27 1 1.5657 4.4063 -0.3862 28 1 4.7384 5.0453 0.9148 29 1 4.6832 4.8538 -1.9817 30 1 3.6044 7.5946 -0.2076 31 1 2.1533 6.0858 -1.4478 32 1 5.2783 2.4455 0.3896 33 1 4.0621 0.2813 0.3950 34 1 2.5364 -2.9547 1.3917 35 1 1.3451 -1.7214 1.9904 36 1 2.5822 -4.6677 -0.3284 37 1 2.3187 -7.1133 -0.2144 38 1 0.1375 -8.0903 0.3778 39 1 -1.7784 -6.6217 0.8634 40 1 -1.5124 -4.1760 0.7585 41 1 1.1008 -1.8602 -1.8290 42 1 2.3653 -3.0524 -1.2990 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14797358_13915762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:33:02 Heat of formation + Delta-G solvation = 94.288582 kcal Electronic energy + Delta-G solvation = -23120.531419 eV Core-core repulsion = 19841.005508 eV Total energy + Delta-G solvation = -3279.525911 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.87747 -40.96152 -39.33195 -37.97285 -35.77187 -33.45507 -32.15469 -31.85553 -31.43791 -28.51527 -26.79223 -26.69544 -25.10766 -24.12931 -23.59291 -22.87233 -21.68369 -20.25785 -18.75691 -18.37674 -17.76471 -17.49473 -16.67137 -16.39958 -16.27180 -16.18709 -15.78561 -15.69983 -15.49630 -14.78570 -14.38969 -14.31592 -14.27772 -14.09792 -14.06403 -13.95756 -13.32927 -13.26729 -13.17586 -13.01215 -12.57210 -12.47002 -12.07999 -12.00508 -11.76178 -11.43048 -11.12559 -10.91177 -10.71263 -10.53908 -10.35775 -9.81040 -9.54670 -8.54761 -4.91239 0.20678 0.39569 0.44689 0.50950 1.33653 1.60055 1.82598 1.96174 2.78926 2.85105 3.38384 3.46464 3.56065 3.69135 3.70598 3.78619 3.91729 3.95903 4.03908 4.05761 4.15651 4.19878 4.26759 4.29843 4.43108 4.47434 4.61077 4.62690 4.65855 4.67765 4.77311 4.78597 4.83924 4.94655 4.95437 5.03430 5.04516 5.15605 5.19375 5.25117 5.34006 5.56959 5.59825 5.65236 5.73342 6.00394 6.13756 6.35306 6.50084 7.10425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.593 5.593 3 C 0.394 3.606 4 N -0.560 5.560 5 C 0.143 3.857 6 C -0.231 4.231 7 C -0.062 4.062 8 O -0.549 6.549 9 Si 0.756 3.244 10 C -0.012 4.012 11 C -0.238 4.238 12 C 0.128 3.872 13 H 0.113 0.887 14 C -0.133 4.133 15 C -0.080 4.080 16 H 0.109 0.891 17 C -0.078 4.078 18 C -0.125 4.125 19 C -0.129 4.129 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.132 4.132 23 C -0.138 4.138 24 H 0.046 0.954 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.165 0.835 28 H 0.126 0.874 29 H 0.384 0.616 30 H -0.300 1.300 31 H -0.284 1.284 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.286 -2.711 1.963 3.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.305 5.305 3 C 0.160 3.840 4 N -0.277 5.277 5 C -0.014 4.014 6 C -0.236 4.236 7 C -0.172 4.172 8 O -0.357 6.357 9 Si 0.662 3.338 10 C -0.037 4.037 11 C -0.263 4.263 12 C 0.023 3.977 13 H 0.131 0.869 14 C -0.172 4.172 15 C -0.098 4.098 16 H 0.126 0.874 17 C -0.078 4.078 18 C -0.143 4.143 19 C -0.147 4.147 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.150 4.150 23 C -0.177 4.177 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.182 0.818 28 H 0.144 0.856 29 H 0.233 0.767 30 H -0.228 1.228 31 H -0.211 1.211 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.084 0.916 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.155 -2.162 1.818 3.052 hybrid contribution 1.059 -0.429 -1.048 1.550 sum -0.096 -2.591 0.771 2.705 Atomic orbital electron populations 1.21850 0.78718 1.03272 1.01476 1.46126 1.05654 1.01356 1.77340 1.18604 0.88901 0.86289 0.90255 1.67178 1.40933 0.98181 1.21418 1.22497 0.91586 0.94629 0.92689 1.20967 0.95123 0.97238 1.10316 1.24893 1.00008 0.99475 0.92854 1.86565 1.36681 1.94665 1.17772 0.94196 0.78787 0.74109 0.86733 1.21415 1.00697 0.90691 0.90934 1.21727 0.93396 1.00471 1.10674 1.22049 0.96932 0.81616 0.97094 0.86916 1.23474 0.98777 0.98110 0.96850 1.21927 0.99485 0.90890 0.97453 0.87369 1.19906 0.93624 0.95406 0.98853 1.21242 0.99240 0.93435 1.00396 1.21445 0.98042 0.95640 0.99612 1.21444 0.93478 1.00696 1.00104 1.21421 0.99583 0.93955 0.99935 1.21312 0.97642 0.95461 1.00575 1.23501 0.99407 0.98074 0.96670 0.93504 0.89570 0.91266 0.81820 0.85616 0.76669 1.22835 1.21088 0.83476 0.83111 0.87811 0.91109 0.84538 0.84756 0.85080 0.85053 0.85285 0.91561 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.01 9.10 127.77 1.16 1.15 16 2 N -0.59 -0.52 3.20 -701.71 -2.25 -2.77 16 3 C 0.39 1.61 7.32 133.06 0.97 2.58 16 4 N -0.56 -3.48 9.15 -193.27 -1.77 -5.24 16 5 C 0.14 0.41 9.84 84.62 0.83 1.24 16 6 C -0.23 -0.25 5.36 -19.76 -0.11 -0.35 16 7 C -0.06 0.03 2.82 71.24 0.20 0.23 16 8 O -0.55 -1.36 12.84 -148.98 -1.91 -3.28 16 9 Si 0.76 -0.98 29.90 68.60 2.05 1.07 16 10 C -0.01 -0.01 9.84 22.44 0.22 0.21 16 11 C -0.24 -0.26 9.29 22.50 0.21 -0.05 16 12 C 0.13 -0.41 4.34 45.52 0.20 -0.22 16 13 H 0.11 -0.60 5.77 -2.39 -0.01 -0.61 16 14 C -0.13 0.54 6.92 31.12 0.22 0.75 16 15 C -0.08 0.24 3.33 -11.02 -0.04 0.21 16 16 H 0.11 -0.36 5.04 -2.39 -0.01 -0.37 16 17 C -0.08 0.01 5.29 -19.86 -0.11 -0.10 16 18 C -0.13 0.07 8.62 22.27 0.19 0.27 16 19 C -0.13 -0.04 10.05 22.27 0.22 0.19 16 20 C -0.14 -0.15 10.05 22.27 0.22 0.07 16 21 C -0.13 -0.17 10.05 22.27 0.22 0.06 16 22 C -0.13 -0.13 9.71 22.27 0.22 0.09 16 23 C -0.14 0.48 6.86 31.12 0.21 0.70 16 24 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.09 -0.28 4.88 -2.38 -0.01 -0.29 16 26 H 0.07 0.16 7.36 -2.38 -0.02 0.14 16 27 H 0.17 -0.11 4.85 -2.91 -0.01 -0.12 16 28 H 0.13 -0.32 7.96 -2.39 -0.02 -0.34 16 29 H 0.38 -0.95 8.70 -74.05 -0.64 -1.59 16 30 H -0.30 -1.85 7.11 99.48 0.71 -1.14 16 31 H -0.28 -0.80 7.02 99.48 0.70 -0.11 16 32 H 0.15 -0.30 8.06 -2.91 -0.02 -0.33 16 33 H 0.15 -0.48 5.99 -2.91 -0.02 -0.50 16 34 H 0.10 -0.55 7.73 -2.39 -0.02 -0.57 16 35 H 0.07 -0.16 8.13 -2.39 -0.02 -0.18 16 36 H 0.14 -0.61 6.64 -2.91 -0.02 -0.63 16 37 H 0.13 -0.43 8.06 -2.91 -0.02 -0.45 16 38 H 0.13 -0.26 8.06 -2.91 -0.02 -0.29 16 39 H 0.13 -0.24 8.06 -2.91 -0.02 -0.26 16 40 H 0.13 -0.24 8.05 -2.92 -0.02 -0.26 16 41 H 0.07 -0.06 8.09 -2.39 -0.02 -0.08 16 42 H 0.11 -0.57 6.30 -2.38 -0.02 -0.59 16 Total: 0.00 -13.38 333.86 1.61 -11.77 By element: Atomic # 1 Polarization: -9.01 SS G_CDS: 0.43 Total: -8.58 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 5.06 Total: 7.03 kcal Atomic # 7 Polarization: -4.00 SS G_CDS: -4.02 Total: -8.02 kcal Atomic # 8 Polarization: -1.36 SS G_CDS: -1.91 Total: -3.28 kcal Atomic # 14 Polarization: -0.98 SS G_CDS: 2.05 Total: 1.07 kcal Total: -13.38 1.61 -11.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14797358_13915762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.059 kcal (2) G-P(sol) polarization free energy of solvation -13.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds