Wall clock time and date at job start Mon Mar 8 2021 05:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38617 * 120.00190 * 2 1 4 4 N 1.29686 * 124.95330 * 179.97438 * 3 2 1 5 5 C 1.32116 * 116.86664 * 179.74047 * 4 3 2 6 6 C 1.33323 * 114.57835 * 0.48123 * 5 4 3 7 7 C 1.50707 * 125.94874 * 179.83213 * 6 5 4 8 8 O 1.42903 * 109.46442 * 244.68516 * 7 6 5 9 9 Si 1.86293 * 109.47256 * 4.68083 * 7 6 5 10 10 S 1.70965 * 124.94634 * 359.97438 * 3 2 1 11 11 C 1.46503 * 120.00076 * 179.97438 * 2 1 3 12 12 H 1.09000 * 112.84960 * 191.19371 * 11 2 1 13 13 C 1.53770 * 113.61578 * 322.50806 * 11 2 1 14 14 C 1.53777 * 87.08240 * 89.11353 * 13 11 2 15 15 H 1.09002 * 113.61656 * 270.88366 * 14 13 11 16 16 C 1.50703 * 113.69188 * 139.99263 * 14 13 11 17 17 C 1.38229 * 119.99814 * 322.18877 * 16 14 13 18 18 C 1.38243 * 119.99710 * 179.74567 * 17 16 14 19 19 C 1.38235 * 119.99985 * 0.55054 * 18 17 16 20 20 C 1.38232 * 120.00005 * 359.70637 * 19 18 17 21 21 C 1.38235 * 119.99756 * 142.46739 * 16 14 13 22 22 C 1.53782 * 113.61115 * 60.00832 * 11 2 1 23 23 H 1.09001 * 109.46502 * 90.00120 * 1 2 3 24 24 H 1.08996 * 109.46835 * 210.00080 * 1 2 3 25 25 H 1.08996 * 109.46766 * 330.00200 * 1 2 3 26 26 H 1.08005 * 122.70793 * 180.28267 * 5 4 3 27 27 H 1.08999 * 109.47345 * 124.68586 * 7 6 5 28 28 H 0.96700 * 114.00311 * 60.00230 * 8 7 6 29 29 H 1.48506 * 109.99973 * 180.02562 * 9 7 6 30 30 H 1.48493 * 110.00375 * 301.32185 * 9 7 6 31 31 H 1.09000 * 113.61714 * 203.65738 * 13 11 2 32 32 H 1.08998 * 113.61458 * 334.56442 * 13 11 2 33 33 H 1.07994 * 120.00305 * 0.02562 * 17 16 14 34 34 H 1.08007 * 119.99600 * 180.27807 * 18 17 16 35 35 H 1.07993 * 120.00000 * 179.72262 * 19 18 17 36 36 H 1.08001 * 120.00175 * 179.97438 * 20 19 18 37 37 H 1.07993 * 120.00725 * 359.97438 * 21 16 14 38 38 H 1.08998 * 113.61426 * 25.42719 * 22 11 2 39 39 H 1.08993 * 113.61454 * 156.33454 * 22 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1581 1.2004 0.0000 4 7 3.4501 1.3124 0.0005 5 6 3.9432 2.5380 -0.0049 6 6 3.0254 3.5051 -0.0001 7 6 3.3013 4.9867 -0.0008 8 8 2.8280 5.5597 1.2198 9 14 5.1352 5.2769 -0.1530 10 16 1.4342 2.7493 -0.0006 11 6 2.1975 -1.2687 0.0006 12 1 3.2625 -1.1425 0.1955 13 6 1.5374 -2.3608 0.8586 14 6 0.7442 -2.7580 -0.3975 15 1 -0.1982 -2.2212 -0.5067 16 6 0.5930 -4.2472 -0.5725 17 6 1.6377 -5.0911 -0.2450 18 6 1.4972 -6.4575 -0.4006 19 6 0.3160 -6.9791 -0.8943 20 6 -0.7268 -6.1347 -1.2267 21 6 -0.5883 -4.7687 -1.0658 22 6 1.8955 -2.1549 -1.2194 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 5.0042 2.7403 -0.0096 27 1 2.7887 5.4513 -0.8431 28 1 3.2418 5.1929 2.0130 29 1 5.4204 6.7343 -0.1542 30 1 5.8483 4.6213 0.9725 31 1 2.2321 -3.1294 1.1974 32 1 0.9146 -1.9678 1.6622 33 1 2.5620 -4.6833 0.1366 34 1 2.3118 -7.1172 -0.1405 35 1 0.2078 -8.0462 -1.0200 36 1 -1.6495 -6.5422 -1.6128 37 1 -1.4030 -4.1091 -1.3255 38 1 1.5618 -1.5956 -2.0934 39 1 2.6881 -2.8671 -1.4487 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14797358_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:33:06 Heat of formation + Delta-G solvation = 89.413780 kcal Electronic energy + Delta-G solvation = -21658.526318 eV Core-core repulsion = 18467.941266 eV Total energy + Delta-G solvation = -3190.585052 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.103 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70036 -40.52905 -39.36406 -37.92330 -35.94398 -32.07776 -31.83478 -31.52684 -28.80178 -26.89154 -26.76875 -25.26177 -24.38646 -23.53429 -22.27875 -21.32974 -19.67840 -19.33619 -18.23287 -17.70105 -17.34273 -16.77407 -16.59778 -16.25516 -15.95614 -15.80285 -15.66722 -15.03513 -14.87649 -14.49803 -14.40173 -14.24024 -14.09685 -13.83678 -13.72251 -13.26933 -13.12201 -12.84232 -12.72212 -12.30853 -12.16139 -11.89547 -11.84796 -11.64258 -11.23992 -10.91497 -10.64077 -10.42762 -10.08297 -9.83358 -9.58415 -8.60867 -4.95913 -0.02731 0.10402 0.41600 0.48579 0.76015 1.43902 1.60473 1.73977 1.98181 1.99065 2.81353 3.35265 3.36282 3.48125 3.59760 3.64505 3.87035 3.89308 3.94592 4.00243 4.08958 4.14285 4.22109 4.26546 4.40467 4.46028 4.51812 4.55998 4.63380 4.65467 4.66921 4.76054 4.86657 4.92981 5.03517 5.08787 5.12606 5.22906 5.56061 5.61311 5.63393 5.74106 6.00546 6.08575 6.38520 6.95157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.562 5.562 3 C 0.318 3.682 4 N -0.549 5.549 5 C 0.097 3.903 6 C -0.305 4.305 7 C -0.030 4.030 8 O -0.531 6.531 9 Si 0.699 3.301 10 S 0.123 5.877 11 C 0.136 3.864 12 H 0.113 0.887 13 C -0.143 4.143 14 C -0.082 4.082 15 H 0.102 0.898 16 C -0.072 4.072 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.139 4.139 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.174 0.826 27 H 0.117 0.883 28 H 0.377 0.623 29 H -0.253 1.253 30 H -0.256 1.256 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.988 -2.327 -1.296 2.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.280 5.280 3 C -0.050 4.050 4 N -0.273 5.273 5 C -0.055 4.055 6 C -0.428 4.428 7 C -0.142 4.142 8 O -0.337 6.337 9 Si 0.599 3.401 10 S 0.374 5.626 11 C 0.030 3.970 12 H 0.131 0.869 13 C -0.182 4.182 14 C -0.100 4.100 15 H 0.120 0.880 16 C -0.072 4.072 17 C -0.135 4.135 18 C -0.135 4.135 19 C -0.142 4.142 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.178 4.178 23 H 0.082 0.918 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.191 0.809 27 H 0.135 0.865 28 H 0.224 0.776 29 H -0.178 1.178 30 H -0.180 1.180 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.486 -1.889 -1.326 2.745 hybrid contribution 0.327 -0.150 1.073 1.131 sum -1.159 -2.039 -0.253 2.359 Atomic orbital electron populations 1.22074 0.77681 1.03956 1.02664 1.45578 1.04639 1.00656 1.77135 1.23661 0.91589 0.91871 0.97914 1.66407 1.08904 1.25052 1.26952 1.21335 1.00505 0.85307 0.98321 1.25892 0.94537 1.00925 1.21441 1.24367 1.12727 0.87375 0.89721 1.86604 1.66620 1.65046 1.15433 0.94850 0.73294 0.82072 0.89933 1.84076 1.09334 0.96239 1.72939 1.21963 0.97277 0.81311 0.96442 0.86921 1.23550 0.99806 0.98100 0.96715 1.21859 0.99044 0.91868 0.97181 0.87969 1.19693 0.94006 0.94659 0.98802 1.21015 0.98646 0.93335 1.00523 1.21186 0.97794 0.95274 0.99273 1.21199 0.93704 0.99939 0.99396 1.21187 0.98988 0.93598 0.99805 1.21062 0.97266 0.95333 0.99871 1.23505 0.98184 0.98546 0.97586 0.91777 0.89015 0.91098 0.80890 0.86507 0.77562 1.17794 1.18045 0.88128 0.90555 0.85997 0.86003 0.86085 0.86038 0.86214 0.90728 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.17 8.81 59.85 0.53 0.36 16 2 N -0.56 -0.10 3.19 -175.34 -0.56 -0.66 16 3 C 0.32 0.65 7.75 -87.67 -0.68 -0.03 16 4 N -0.55 -1.73 9.70 -15.21 -0.15 -1.87 16 5 C 0.10 0.16 10.07 -19.15 -0.19 -0.04 16 6 C -0.30 -0.37 5.92 -36.02 -0.21 -0.58 16 7 C -0.03 -0.01 3.08 36.01 0.11 0.10 16 8 O -0.53 -0.89 12.88 -35.23 -0.45 -1.34 16 9 Si 0.70 -0.67 30.50 -169.99 -5.18 -5.85 16 10 S 0.12 0.15 21.68 -107.50 -2.33 -2.18 16 11 C 0.14 -0.05 4.55 -67.12 -0.31 -0.36 16 12 H 0.11 0.11 7.44 -51.93 -0.39 -0.28 16 13 C -0.14 0.22 6.67 -25.93 -0.17 0.05 16 14 C -0.08 0.12 3.31 -90.96 -0.30 -0.18 16 15 H 0.10 -0.24 5.50 -51.93 -0.29 -0.52 16 16 C -0.07 0.00 5.29 -104.62 -0.55 -0.55 16 17 C -0.12 -0.01 8.60 -39.58 -0.34 -0.35 16 18 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 19 C -0.12 -0.06 10.05 -39.58 -0.40 -0.46 16 20 C -0.12 -0.05 10.05 -39.58 -0.40 -0.44 16 21 C -0.12 -0.03 9.71 -39.58 -0.38 -0.41 16 22 C -0.14 0.14 7.21 -25.92 -0.19 -0.05 16 23 H 0.06 -0.18 8.14 -51.93 -0.42 -0.60 16 24 H 0.09 -0.30 4.83 -51.93 -0.25 -0.55 16 25 H 0.07 -0.16 7.04 -51.93 -0.37 -0.53 16 26 H 0.17 -0.08 5.87 -52.48 -0.31 -0.39 16 27 H 0.12 -0.04 7.96 -51.93 -0.41 -0.45 16 28 H 0.38 -0.40 8.70 45.56 0.40 0.00 16 29 H -0.25 -0.53 7.11 56.52 0.40 -0.13 16 30 H -0.26 -0.23 7.11 56.52 0.40 0.17 16 31 H 0.10 -0.19 6.33 -51.93 -0.33 -0.52 16 32 H 0.08 -0.11 7.36 -51.93 -0.38 -0.49 16 33 H 0.12 -0.16 6.68 -52.49 -0.35 -0.51 16 34 H 0.12 -0.15 8.06 -52.48 -0.42 -0.57 16 35 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 36 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 37 H 0.12 -0.16 8.05 -52.49 -0.42 -0.58 16 38 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 39 H 0.10 -0.10 7.71 -51.93 -0.40 -0.50 16 LS Contribution 327.22 15.07 4.93 4.93 Total: 0.00 -5.92 327.22 -12.44 -18.36 By element: Atomic # 1 Polarization: -3.19 SS G_CDS: -4.81 Total: -8.00 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -3.88 Total: -3.38 kcal Atomic # 7 Polarization: -1.82 SS G_CDS: -0.71 Total: -2.53 kcal Atomic # 8 Polarization: -0.89 SS G_CDS: -0.45 Total: -1.34 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: -5.18 Total: -5.85 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.33 Total: -2.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -5.92 -12.44 -18.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14797358_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.770 kcal (2) G-P(sol) polarization free energy of solvation -5.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds