Wall clock time and date at job start Mon Mar 8 2021 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38617 * 120.00190 * 2 1 4 4 N 1.29686 * 124.95330 * 179.97438 * 3 2 1 5 5 C 1.32116 * 116.86664 * 179.74047 * 4 3 2 6 6 C 1.33323 * 114.57835 * 0.48123 * 5 4 3 7 7 C 1.50707 * 125.94874 * 179.83213 * 6 5 4 8 8 O 1.42903 * 109.46442 * 244.68516 * 7 6 5 9 9 Si 1.86293 * 109.47256 * 4.68083 * 7 6 5 10 10 S 1.70965 * 124.94634 * 359.97438 * 3 2 1 11 11 C 1.46503 * 120.00076 * 179.97438 * 2 1 3 12 12 H 1.09000 * 112.84960 * 191.19371 * 11 2 1 13 13 C 1.53770 * 113.61578 * 322.50806 * 11 2 1 14 14 C 1.53777 * 87.08240 * 89.11353 * 13 11 2 15 15 H 1.09002 * 113.61656 * 270.88366 * 14 13 11 16 16 C 1.50703 * 113.69188 * 139.99263 * 14 13 11 17 17 C 1.38229 * 119.99814 * 322.18877 * 16 14 13 18 18 C 1.38243 * 119.99710 * 179.74567 * 17 16 14 19 19 C 1.38235 * 119.99985 * 0.55054 * 18 17 16 20 20 C 1.38232 * 120.00005 * 359.70637 * 19 18 17 21 21 C 1.38235 * 119.99756 * 142.46739 * 16 14 13 22 22 C 1.53782 * 113.61115 * 60.00832 * 11 2 1 23 23 H 1.09001 * 109.46502 * 90.00120 * 1 2 3 24 24 H 1.08996 * 109.46835 * 210.00080 * 1 2 3 25 25 H 1.08996 * 109.46766 * 330.00200 * 1 2 3 26 26 H 1.08005 * 122.70793 * 180.28267 * 5 4 3 27 27 H 1.08999 * 109.47345 * 124.68586 * 7 6 5 28 28 H 0.96700 * 114.00311 * 60.00230 * 8 7 6 29 29 H 1.48506 * 109.99973 * 180.02562 * 9 7 6 30 30 H 1.48493 * 110.00375 * 301.32185 * 9 7 6 31 31 H 1.09000 * 113.61714 * 203.65738 * 13 11 2 32 32 H 1.08998 * 113.61458 * 334.56442 * 13 11 2 33 33 H 1.07994 * 120.00305 * 0.02562 * 17 16 14 34 34 H 1.08007 * 119.99600 * 180.27807 * 18 17 16 35 35 H 1.07993 * 120.00000 * 179.72262 * 19 18 17 36 36 H 1.08001 * 120.00175 * 179.97438 * 20 19 18 37 37 H 1.07993 * 120.00725 * 359.97438 * 21 16 14 38 38 H 1.08998 * 113.61426 * 25.42719 * 22 11 2 39 39 H 1.08993 * 113.61454 * 156.33454 * 22 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1581 1.2004 0.0000 4 7 3.4501 1.3124 0.0005 5 6 3.9432 2.5380 -0.0049 6 6 3.0254 3.5051 -0.0001 7 6 3.3013 4.9867 -0.0008 8 8 2.8280 5.5597 1.2198 9 14 5.1352 5.2769 -0.1530 10 16 1.4342 2.7493 -0.0006 11 6 2.1975 -1.2687 0.0006 12 1 3.2625 -1.1425 0.1955 13 6 1.5374 -2.3608 0.8586 14 6 0.7442 -2.7580 -0.3975 15 1 -0.1982 -2.2212 -0.5067 16 6 0.5930 -4.2472 -0.5725 17 6 1.6377 -5.0911 -0.2450 18 6 1.4972 -6.4575 -0.4006 19 6 0.3160 -6.9791 -0.8943 20 6 -0.7268 -6.1347 -1.2267 21 6 -0.5883 -4.7687 -1.0658 22 6 1.8955 -2.1549 -1.2194 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 5.0042 2.7403 -0.0096 27 1 2.7887 5.4513 -0.8431 28 1 3.2418 5.1929 2.0130 29 1 5.4204 6.7343 -0.1542 30 1 5.8483 4.6213 0.9725 31 1 2.2321 -3.1294 1.1974 32 1 0.9146 -1.9678 1.6622 33 1 2.5620 -4.6833 0.1366 34 1 2.3118 -7.1172 -0.1405 35 1 0.2078 -8.0462 -1.0200 36 1 -1.6495 -6.5422 -1.6128 37 1 -1.4030 -4.1091 -1.3255 38 1 1.5618 -1.5956 -2.0934 39 1 2.6881 -2.8671 -1.4487 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14797358_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:33:05 Heat of formation + Delta-G solvation = 96.128564 kcal Electronic energy + Delta-G solvation = -21658.235143 eV Core-core repulsion = 18467.941266 eV Total energy + Delta-G solvation = -3190.293877 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.103 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65788 -40.57938 -39.32904 -37.98496 -35.91777 -32.06083 -31.81792 -31.51425 -28.72919 -26.87706 -26.70745 -25.27480 -24.38422 -23.50102 -22.26284 -21.30191 -19.72775 -19.32236 -18.19420 -17.75327 -17.33954 -16.73715 -16.62647 -16.22211 -15.94416 -15.78803 -15.67043 -15.04883 -14.86778 -14.49407 -14.35663 -14.16194 -14.03443 -13.84353 -13.67738 -13.18751 -13.04090 -12.86222 -12.66922 -12.38616 -12.10432 -11.95357 -11.78758 -11.56811 -11.18838 -10.92208 -10.67736 -10.52686 -10.17417 -9.80776 -9.55316 -8.62841 -4.90390 -0.10497 0.04535 0.44250 0.51113 0.70384 1.45001 1.62891 1.77168 1.89138 1.98302 2.84342 3.37089 3.42746 3.50305 3.66944 3.71612 3.86234 3.96493 4.02861 4.12027 4.16268 4.23374 4.30637 4.37943 4.43881 4.56322 4.59227 4.64537 4.66581 4.71472 4.74750 4.81390 4.93356 4.99388 5.07403 5.14212 5.18640 5.26662 5.59674 5.65225 5.66979 5.79217 5.98855 6.13720 6.43675 6.88217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.562 5.562 3 C 0.309 3.691 4 N -0.575 5.575 5 C 0.089 3.911 6 C -0.308 4.308 7 C -0.040 4.040 8 O -0.549 6.549 9 Si 0.785 3.215 10 S 0.125 5.875 11 C 0.134 3.866 12 H 0.097 0.903 13 C -0.135 4.135 14 C -0.072 4.072 15 H 0.113 0.887 16 C -0.078 4.078 17 C -0.127 4.127 18 C -0.130 4.130 19 C -0.139 4.139 20 C -0.131 4.131 21 C -0.129 4.129 22 C -0.134 4.134 23 H 0.073 0.927 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.189 0.811 27 H 0.123 0.877 28 H 0.386 0.614 29 H -0.295 1.295 30 H -0.278 1.278 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.068 0.932 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.397 -2.584 -1.409 3.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.279 5.279 3 C -0.060 4.060 4 N -0.301 5.301 5 C -0.062 4.062 6 C -0.431 4.431 7 C -0.151 4.151 8 O -0.357 6.357 9 Si 0.687 3.313 10 S 0.376 5.624 11 C 0.027 3.973 12 H 0.115 0.885 13 C -0.174 4.174 14 C -0.090 4.090 15 H 0.131 0.869 16 C -0.078 4.078 17 C -0.144 4.144 18 C -0.148 4.148 19 C -0.156 4.156 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.173 4.173 23 H 0.092 0.908 24 H 0.123 0.877 25 H 0.091 0.909 26 H 0.205 0.795 27 H 0.140 0.860 28 H 0.236 0.764 29 H -0.222 1.222 30 H -0.205 1.205 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.087 0.913 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.923 -2.175 -1.443 3.242 hybrid contribution 0.441 -0.077 1.121 1.207 sum -1.482 -2.252 -0.322 2.715 Atomic orbital electron populations 1.22259 0.76350 1.04733 1.03520 1.45793 1.05463 1.00248 1.76405 1.23896 0.91612 0.92689 0.97776 1.66435 1.09620 1.25885 1.28133 1.21586 1.01332 0.85056 0.98219 1.25990 0.94436 1.01221 1.21492 1.24638 1.14049 0.86855 0.89508 1.86570 1.67375 1.65486 1.16302 0.93818 0.70895 0.78365 0.88189 1.83997 1.09497 0.95915 1.73026 1.21949 0.96626 0.81449 0.97246 0.88510 1.23507 0.99691 0.97542 0.96631 1.21830 0.99283 0.91114 0.96796 0.86872 1.19872 0.93977 0.95320 0.98663 1.21227 0.99212 0.93445 1.00560 1.21432 0.98243 0.95756 0.99407 1.21442 0.93919 1.00695 0.99593 1.21437 0.99553 0.93913 0.99956 1.21319 0.97839 0.95629 0.99864 1.23445 0.98428 0.98274 0.97121 0.90840 0.87670 0.90898 0.79461 0.85969 0.76447 1.22208 1.20463 0.87785 0.90314 0.84985 0.84933 0.85084 0.84903 0.84869 0.91339 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.36 8.81 127.77 1.13 0.77 16 2 N -0.56 -0.20 3.19 -708.65 -2.26 -2.46 16 3 C 0.31 1.37 7.75 179.32 1.39 2.76 16 4 N -0.57 -3.94 9.70 -202.02 -1.96 -5.90 16 5 C 0.09 0.31 10.07 83.54 0.84 1.15 16 6 C -0.31 -0.80 5.92 24.58 0.15 -0.65 16 7 C -0.04 -0.03 3.08 71.24 0.22 0.19 16 8 O -0.55 -1.96 12.88 -148.98 -1.92 -3.88 16 9 Si 0.78 -1.48 30.50 68.60 2.09 0.61 16 10 S 0.13 0.34 21.68 -56.49 -1.22 -0.89 16 11 C 0.13 -0.08 4.55 45.51 0.21 0.13 16 12 H 0.10 0.28 7.44 -2.39 -0.02 0.26 16 13 C -0.14 0.47 6.67 31.12 0.21 0.67 16 14 C -0.07 0.26 3.31 -11.01 -0.04 0.22 16 15 H 0.11 -0.66 5.50 -2.39 -0.01 -0.68 16 16 C -0.08 0.03 5.29 -19.87 -0.11 -0.08 16 17 C -0.13 -0.01 8.60 22.27 0.19 0.18 16 18 C -0.13 -0.10 10.05 22.27 0.22 0.12 16 19 C -0.14 -0.14 10.05 22.27 0.22 0.08 16 20 C -0.13 -0.09 10.05 22.27 0.22 0.13 16 21 C -0.13 -0.01 9.71 22.27 0.22 0.21 16 22 C -0.13 0.26 7.21 31.12 0.22 0.49 16 23 H 0.07 -0.48 8.14 -2.39 -0.02 -0.50 16 24 H 0.11 -0.81 4.83 -2.39 -0.01 -0.82 16 25 H 0.07 -0.37 7.04 -2.39 -0.02 -0.38 16 26 H 0.19 -0.17 5.87 -2.91 -0.02 -0.19 16 27 H 0.12 -0.09 7.96 -2.39 -0.02 -0.11 16 28 H 0.39 -0.69 8.70 -74.06 -0.64 -1.33 16 29 H -0.29 -1.48 7.11 99.48 0.71 -0.77 16 30 H -0.28 -0.50 7.11 99.48 0.71 0.21 16 31 H 0.10 -0.42 6.33 -2.39 -0.02 -0.43 16 32 H 0.08 -0.28 7.36 -2.39 -0.02 -0.30 16 33 H 0.13 -0.37 6.68 -2.91 -0.02 -0.39 16 34 H 0.13 -0.32 8.06 -2.91 -0.02 -0.34 16 35 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 36 H 0.13 -0.34 8.06 -2.91 -0.02 -0.36 16 37 H 0.13 -0.46 8.05 -2.91 -0.02 -0.49 16 38 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.10 -0.17 7.71 -2.39 -0.02 -0.19 16 Total: 0.00 -13.78 327.22 0.50 -13.28 By element: Atomic # 1 Polarization: -7.63 SS G_CDS: 0.47 Total: -7.16 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 5.30 Total: 6.38 kcal Atomic # 7 Polarization: -4.14 SS G_CDS: -4.22 Total: -8.36 kcal Atomic # 8 Polarization: -1.96 SS G_CDS: -1.92 Total: -3.88 kcal Atomic # 14 Polarization: -1.48 SS G_CDS: 2.09 Total: 0.61 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.22 Total: -0.89 kcal Total: -13.78 0.50 -13.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14797358_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.410 kcal (2) G-P(sol) polarization free energy of solvation -13.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds