Wall clock time and date at job start Mon Mar 8 2021 05:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33324 * 125.95095 * 2 1 4 4 C 1.50702 * 122.70846 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47348 * 330.00300 * 4 3 2 6 6 Si 1.86299 * 109.47251 * 210.00133 * 4 3 2 7 7 N 1.32114 * 114.58100 * 179.75460 * 3 2 1 8 8 C 1.29689 * 116.86638 * 0.47055 * 7 3 2 9 9 N 1.38603 * 124.95003 * 179.81407 * 8 7 3 10 10 C 1.46504 * 120.00243 * 359.72419 * 9 8 7 11 11 C 1.46506 * 120.00246 * 179.72003 * 9 8 7 12 12 H 1.08998 * 112.84435 * 65.04155 * 11 9 8 13 13 C 1.53780 * 113.61579 * 196.34872 * 11 9 8 14 14 C 1.53784 * 87.07991 * 89.11619 * 13 11 9 15 15 H 1.08999 * 113.61575 * 270.88358 * 14 13 11 16 16 C 1.50699 * 113.61262 * 139.97744 * 14 13 11 17 17 C 1.38232 * 120.00093 * 322.23107 * 16 14 13 18 18 C 1.38234 * 120.00121 * 179.78566 * 17 16 14 19 19 C 1.38241 * 119.99734 * 0.46562 * 18 17 16 20 20 C 1.38230 * 120.00009 * 359.76595 * 19 18 17 21 21 C 1.38236 * 120.00229 * 0.02562 * 20 19 18 22 22 C 1.53782 * 113.61189 * 293.84918 * 11 9 8 23 23 S 1.70965 * 110.09916 * 359.54989 * 8 7 3 24 24 H 1.09001 * 109.46615 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47156 * 300.02453 * 1 2 3 26 26 H 1.08992 * 109.47278 * 60.02655 * 1 2 3 27 27 H 1.09002 * 109.47058 * 90.00057 * 4 3 2 28 28 H 0.96702 * 114.00452 * 179.97438 * 5 4 3 29 29 H 1.48496 * 109.99840 * 60.00204 * 6 4 3 30 30 H 1.48506 * 109.99901 * 181.32266 * 6 4 3 31 31 H 1.09003 * 109.47027 * 264.61326 * 10 9 8 32 32 H 1.08999 * 109.46851 * 24.61269 * 10 9 8 33 33 H 1.09000 * 109.47400 * 144.61139 * 10 9 8 34 34 H 1.09003 * 113.61115 * 203.66383 * 13 11 9 35 35 H 1.08999 * 113.61394 * 334.56830 * 13 11 9 36 36 H 1.08005 * 120.00162 * 359.97438 * 17 16 14 37 37 H 1.07999 * 120.00288 * 180.25082 * 18 17 16 38 38 H 1.08004 * 119.99842 * 179.78778 * 19 18 17 39 39 H 1.08001 * 120.00239 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.00295 * 179.97438 * 21 20 19 41 41 H 1.08996 * 113.61308 * 25.42806 * 22 11 9 42 42 H 1.09003 * 113.61104 * 156.33062 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 0.4815 2.5019 -0.6746 6 14 2.9325 3.6147 -0.8787 7 7 3.5850 0.8188 0.0051 8 6 3.9315 -0.4309 0.0000 9 7 5.2384 -0.8925 0.0004 10 6 6.3517 0.0599 0.0009 11 6 5.5067 -2.3328 0.0004 12 1 5.1678 -2.8263 -0.9104 13 6 6.9485 -2.6909 0.3975 14 6 6.4546 -2.7289 1.8533 15 1 6.5142 -1.7656 2.3599 16 6 7.0458 -3.8546 2.6621 17 6 7.2556 -5.0896 2.0776 18 6 7.8020 -6.1210 2.8183 19 6 8.1297 -5.9201 4.1462 20 6 7.9154 -4.6865 4.7320 21 6 7.3730 -3.6539 3.9902 22 6 5.0589 -3.0427 1.2890 23 16 2.5413 -1.4261 0.0000 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5142 0.8897 26 1 -0.3633 0.5134 -0.8901 27 1 1.6088 2.8217 1.0270 28 1 0.0689 3.3757 -0.7128 29 1 3.1217 3.1637 -2.2808 30 1 2.4183 5.0078 -0.8582 31 1 6.6909 0.2229 -1.0221 32 1 6.0203 1.0059 0.4289 33 1 7.1722 -0.3406 0.5963 34 1 7.2767 -3.6602 0.0223 35 1 7.6662 -1.8945 0.2005 36 1 6.9955 -5.2478 1.0414 37 1 7.9697 -7.0847 2.3606 38 1 8.5534 -6.7269 4.7259 39 1 8.1717 -4.5294 5.7693 40 1 7.2052 -2.6902 4.4479 41 1 4.2513 -2.5304 1.8116 42 1 4.8705 -4.1082 1.1575 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14797358_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:33:09 Heat of formation + Delta-G solvation = 86.019834 kcal Electronic energy + Delta-G solvation = -23931.019898 eV Core-core repulsion = 20584.750055 eV Total energy + Delta-G solvation = -3346.269844 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.119 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64945 -40.73404 -39.42367 -37.72388 -35.89272 -32.81973 -31.93215 -31.65458 -29.62414 -28.57214 -26.75226 -25.86423 -25.39501 -23.89110 -23.33282 -22.09839 -20.35162 -19.82693 -19.03296 -18.42308 -17.97271 -17.32222 -16.64156 -16.60556 -16.19546 -15.90755 -15.62983 -15.60939 -15.02243 -14.55639 -14.43527 -14.24410 -14.13950 -14.00096 -13.86208 -13.80083 -13.48512 -13.19056 -13.00164 -12.93724 -12.84870 -12.73679 -12.30414 -12.13802 -11.79567 -11.65277 -11.56931 -11.47700 -10.77674 -10.47282 -10.27485 -9.84424 -9.83538 -9.58381 -8.36301 -4.65836 0.15997 0.27996 0.40275 0.47979 0.92611 1.41637 1.70646 1.79041 2.04269 2.19196 2.79572 3.02504 3.24124 3.34168 3.58660 3.78571 3.94291 3.95994 4.07938 4.14457 4.17078 4.22710 4.26871 4.40254 4.45569 4.47652 4.48450 4.53389 4.59619 4.60657 4.70759 4.80761 4.86467 4.93083 4.95720 4.98577 5.06309 5.09342 5.13365 5.24401 5.44766 5.55266 5.61781 5.67784 5.80814 6.05853 6.07687 6.49412 7.03034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.235 4.235 3 C 0.104 3.896 4 C -0.041 4.041 5 O -0.535 6.535 6 Si 0.717 3.283 7 N -0.538 5.538 8 C 0.324 3.676 9 N -0.567 5.567 10 C 0.093 3.907 11 C 0.121 3.879 12 H 0.089 0.911 13 C -0.133 4.133 14 C -0.067 4.067 15 H 0.099 0.901 16 C -0.072 4.072 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.145 4.145 23 S 0.099 5.901 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.381 0.619 29 H -0.263 1.263 30 H -0.265 1.265 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.306 -1.288 1.801 3.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.357 4.357 3 C -0.026 4.026 4 C -0.153 4.153 5 O -0.342 6.342 6 Si 0.618 3.382 7 N -0.265 5.265 8 C -0.046 4.046 9 N -0.287 5.287 10 C -0.051 4.051 11 C 0.017 3.983 12 H 0.106 0.894 13 C -0.171 4.171 14 C -0.085 4.085 15 H 0.118 0.882 16 C -0.072 4.072 17 C -0.136 4.136 18 C -0.135 4.135 19 C -0.142 4.142 20 C -0.135 4.135 21 C -0.133 4.133 22 C -0.184 4.184 23 S 0.351 5.649 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.230 0.770 29 H -0.187 1.187 30 H -0.191 1.191 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.971 -2.122 1.064 3.803 hybrid contribution -1.330 0.990 0.009 1.658 sum 1.641 -1.131 1.073 2.264 Atomic orbital electron populations 1.20065 0.86644 1.01267 1.03587 1.25116 1.01332 0.92840 1.16428 1.18697 0.86592 0.94878 1.02383 1.23981 0.92056 0.97850 1.01378 1.86546 1.33256 1.34985 1.79378 0.93745 0.87372 0.74969 0.82121 1.65567 1.16636 1.16518 1.27788 1.23025 0.91051 0.91323 0.99181 1.45484 1.00213 1.04820 1.78169 1.21807 0.88194 0.93151 1.01938 1.22060 0.98459 0.79236 0.98593 0.89371 1.23444 0.94873 1.03501 0.95234 1.21507 0.95446 0.97289 0.94240 0.88244 1.19669 0.98859 0.94561 0.94140 1.20995 0.99888 0.92725 0.99945 1.21176 0.98863 0.99036 0.94470 1.21208 1.00222 0.97394 0.95341 1.21193 0.99041 0.93320 0.99993 1.21080 0.99225 0.99238 0.93781 1.23533 0.97143 1.01640 0.96119 1.84027 0.96366 1.10472 1.74068 0.92564 0.91137 0.89580 0.90181 0.77047 1.18732 1.19121 0.92686 0.89567 0.90845 0.87810 0.89470 0.86020 0.85990 0.86067 0.86012 0.86168 0.90261 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.11 8.91 36.01 0.32 0.21 16 2 C -0.23 -0.82 6.50 -36.02 -0.23 -1.05 16 3 C 0.10 0.39 5.95 -84.19 -0.50 -0.11 16 4 C -0.04 -0.07 2.93 36.01 0.11 0.04 16 5 O -0.53 -0.68 9.80 -35.23 -0.35 -1.02 16 6 Si 0.72 1.17 32.09 -169.99 -5.45 -4.29 16 7 N -0.54 -2.00 8.08 -11.37 -0.09 -2.09 16 8 C 0.32 0.85 7.46 -87.69 -0.65 0.20 16 9 N -0.57 -0.23 3.11 -175.33 -0.55 -0.77 16 10 C 0.09 -0.10 10.00 59.85 0.60 0.50 16 11 C 0.12 -0.16 3.99 -67.11 -0.27 -0.43 16 12 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 13 C -0.13 0.33 6.58 -25.92 -0.17 0.16 16 14 C -0.07 0.09 3.75 -90.96 -0.34 -0.25 16 15 H 0.10 -0.10 7.97 -51.93 -0.41 -0.52 16 16 C -0.07 0.01 5.29 -104.62 -0.55 -0.54 16 17 C -0.12 0.05 8.60 -39.59 -0.34 -0.29 16 18 C -0.12 0.00 10.05 -39.58 -0.40 -0.40 16 19 C -0.12 -0.04 10.05 -39.58 -0.40 -0.43 16 20 C -0.12 -0.04 10.05 -39.59 -0.40 -0.44 16 21 C -0.12 -0.04 9.71 -39.58 -0.38 -0.43 16 22 C -0.15 0.18 6.67 -25.92 -0.17 0.01 16 23 S 0.10 0.21 20.94 -107.50 -2.25 -2.04 16 24 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 25 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 26 H 0.09 0.21 6.74 -51.93 -0.35 -0.14 16 27 H 0.08 0.01 7.96 -51.93 -0.41 -0.40 16 28 H 0.38 -1.06 8.74 45.56 0.40 -0.66 16 29 H -0.26 -1.48 7.11 56.52 0.40 -1.08 16 30 H -0.27 -0.68 7.11 56.52 0.40 -0.27 16 31 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.09 -0.03 7.46 -51.93 -0.39 -0.42 16 33 H 0.07 -0.20 5.62 -51.93 -0.29 -0.49 16 34 H 0.10 -0.33 6.32 -51.93 -0.33 -0.66 16 35 H 0.09 -0.25 5.82 -51.93 -0.30 -0.55 16 36 H 0.12 -0.26 6.68 -52.48 -0.35 -0.61 16 37 H 0.12 -0.19 8.06 -52.49 -0.42 -0.62 16 38 H 0.12 -0.15 8.06 -52.48 -0.42 -0.57 16 39 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 40 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 41 H 0.08 0.01 7.01 -51.93 -0.36 -0.35 16 42 H 0.10 -0.18 7.71 -51.93 -0.40 -0.58 16 LS Contribution 347.54 15.07 5.24 5.24 Total: 0.00 -5.93 347.54 -13.02 -18.95 By element: Atomic # 1 Polarization: -4.94 SS G_CDS: -5.78 Total: -10.73 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -3.79 Total: -3.25 kcal Atomic # 7 Polarization: -2.22 SS G_CDS: -0.64 Total: -2.86 kcal Atomic # 8 Polarization: -0.68 SS G_CDS: -0.35 Total: -1.02 kcal Atomic # 14 Polarization: 1.17 SS G_CDS: -5.45 Total: -4.29 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.25 Total: -2.04 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -5.93 -13.02 -18.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14797358_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.967 kcal (2) G-P(sol) polarization free energy of solvation -5.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds