Wall clock time and date at job start Mon Mar 8 2021 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33324 * 125.95095 * 2 1 4 4 C 1.50702 * 122.70846 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47348 * 330.00300 * 4 3 2 6 6 Si 1.86299 * 109.47251 * 210.00133 * 4 3 2 7 7 N 1.32114 * 114.58100 * 179.75460 * 3 2 1 8 8 C 1.29689 * 116.86638 * 0.47055 * 7 3 2 9 9 N 1.38603 * 124.95003 * 179.81407 * 8 7 3 10 10 C 1.46504 * 120.00243 * 359.72419 * 9 8 7 11 11 C 1.46506 * 120.00246 * 179.72003 * 9 8 7 12 12 H 1.08998 * 112.84435 * 65.04155 * 11 9 8 13 13 C 1.53780 * 113.61579 * 196.34872 * 11 9 8 14 14 C 1.53784 * 87.07991 * 89.11619 * 13 11 9 15 15 H 1.08999 * 113.61575 * 270.88358 * 14 13 11 16 16 C 1.50699 * 113.61262 * 139.97744 * 14 13 11 17 17 C 1.38232 * 120.00093 * 322.23107 * 16 14 13 18 18 C 1.38234 * 120.00121 * 179.78566 * 17 16 14 19 19 C 1.38241 * 119.99734 * 0.46562 * 18 17 16 20 20 C 1.38230 * 120.00009 * 359.76595 * 19 18 17 21 21 C 1.38236 * 120.00229 * 0.02562 * 20 19 18 22 22 C 1.53782 * 113.61189 * 293.84918 * 11 9 8 23 23 S 1.70965 * 110.09916 * 359.54989 * 8 7 3 24 24 H 1.09001 * 109.46615 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47156 * 300.02453 * 1 2 3 26 26 H 1.08992 * 109.47278 * 60.02655 * 1 2 3 27 27 H 1.09002 * 109.47058 * 90.00057 * 4 3 2 28 28 H 0.96702 * 114.00452 * 179.97438 * 5 4 3 29 29 H 1.48496 * 109.99840 * 60.00204 * 6 4 3 30 30 H 1.48506 * 109.99901 * 181.32266 * 6 4 3 31 31 H 1.09003 * 109.47027 * 264.61326 * 10 9 8 32 32 H 1.08999 * 109.46851 * 24.61269 * 10 9 8 33 33 H 1.09000 * 109.47400 * 144.61139 * 10 9 8 34 34 H 1.09003 * 113.61115 * 203.66383 * 13 11 9 35 35 H 1.08999 * 113.61394 * 334.56830 * 13 11 9 36 36 H 1.08005 * 120.00162 * 359.97438 * 17 16 14 37 37 H 1.07999 * 120.00288 * 180.25082 * 18 17 16 38 38 H 1.08004 * 119.99842 * 179.78778 * 19 18 17 39 39 H 1.08001 * 120.00239 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.00295 * 179.97438 * 21 20 19 41 41 H 1.08996 * 113.61308 * 25.42806 * 22 11 9 42 42 H 1.09003 * 113.61104 * 156.33062 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 0.4815 2.5019 -0.6746 6 14 2.9325 3.6147 -0.8787 7 7 3.5850 0.8188 0.0051 8 6 3.9315 -0.4309 0.0000 9 7 5.2384 -0.8925 0.0004 10 6 6.3517 0.0599 0.0009 11 6 5.5067 -2.3328 0.0004 12 1 5.1678 -2.8263 -0.9104 13 6 6.9485 -2.6909 0.3975 14 6 6.4546 -2.7289 1.8533 15 1 6.5142 -1.7656 2.3599 16 6 7.0458 -3.8546 2.6621 17 6 7.2556 -5.0896 2.0776 18 6 7.8020 -6.1210 2.8183 19 6 8.1297 -5.9201 4.1462 20 6 7.9154 -4.6865 4.7320 21 6 7.3730 -3.6539 3.9902 22 6 5.0589 -3.0427 1.2890 23 16 2.5413 -1.4261 0.0000 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5142 0.8897 26 1 -0.3633 0.5134 -0.8901 27 1 1.6088 2.8217 1.0270 28 1 0.0689 3.3757 -0.7128 29 1 3.1217 3.1637 -2.2808 30 1 2.4183 5.0078 -0.8582 31 1 6.6909 0.2229 -1.0221 32 1 6.0203 1.0059 0.4289 33 1 7.1722 -0.3406 0.5963 34 1 7.2767 -3.6602 0.0223 35 1 7.6662 -1.8945 0.2005 36 1 6.9955 -5.2478 1.0414 37 1 7.9697 -7.0847 2.3606 38 1 8.5534 -6.7269 4.7259 39 1 8.1717 -4.5294 5.7693 40 1 7.2052 -2.6902 4.4479 41 1 4.2513 -2.5304 1.8116 42 1 4.8705 -4.1082 1.1575 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14797358_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:33:08 Heat of formation + Delta-G solvation = 94.457753 kcal Electronic energy + Delta-G solvation = -23930.654003 eV Core-core repulsion = 20584.750055 eV Total energy + Delta-G solvation = -3345.903948 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.119 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60335 -40.83416 -39.37839 -37.79691 -35.90415 -32.92553 -31.87849 -31.60422 -29.69729 -28.56270 -26.65323 -25.84164 -25.50521 -23.89087 -23.32018 -22.06027 -20.32570 -19.95930 -19.09712 -18.37346 -17.98476 -17.36116 -16.65400 -16.57198 -16.26422 -15.90980 -15.69893 -15.63409 -15.04416 -14.50311 -14.44695 -14.18869 -14.17077 -14.06817 -13.91056 -13.76939 -13.59717 -13.27629 -13.13397 -12.87698 -12.79028 -12.61499 -12.43065 -12.18433 -11.73912 -11.70550 -11.48765 -11.45341 -10.85112 -10.64826 -10.37348 -9.96428 -9.80103 -9.53855 -8.45813 -4.80656 -0.01088 0.14996 0.44530 0.51813 0.76422 1.26850 1.59795 1.69413 1.84766 2.01938 2.84502 2.99817 3.34802 3.44645 3.68899 3.86347 3.91664 4.03967 4.12429 4.16552 4.24569 4.27985 4.31972 4.36403 4.39417 4.50540 4.57584 4.65252 4.68161 4.73037 4.79181 4.83037 4.84153 4.91204 4.97903 5.06778 5.10606 5.14830 5.19735 5.23167 5.31088 5.60306 5.66231 5.72554 5.84681 5.99315 6.14210 6.61922 6.87689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.258 4.258 3 C 0.088 3.912 4 C -0.042 4.042 5 O -0.546 6.546 6 Si 0.776 3.224 7 N -0.555 5.555 8 C 0.315 3.685 9 N -0.564 5.564 10 C 0.090 3.910 11 C 0.116 3.884 12 H 0.093 0.907 13 C -0.122 4.122 14 C -0.063 4.063 15 H 0.094 0.906 16 C -0.077 4.077 17 C -0.123 4.123 18 C -0.128 4.128 19 C -0.138 4.138 20 C -0.131 4.131 21 C -0.131 4.131 22 C -0.142 4.142 23 S 0.111 5.889 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.398 0.602 29 H -0.321 1.321 30 H -0.273 1.273 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.064 0.936 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -1.692 1.938 3.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.381 4.381 3 C -0.042 4.042 4 C -0.154 4.154 5 O -0.356 6.356 6 Si 0.682 3.318 7 N -0.283 5.283 8 C -0.055 4.055 9 N -0.284 5.284 10 C -0.054 4.054 11 C 0.013 3.987 12 H 0.110 0.890 13 C -0.159 4.159 14 C -0.082 4.082 15 H 0.113 0.887 16 C -0.077 4.077 17 C -0.141 4.141 18 C -0.146 4.146 19 C -0.156 4.156 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.181 4.181 23 S 0.362 5.638 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.249 0.751 29 H -0.249 1.249 30 H -0.200 1.200 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.083 0.917 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.393 -2.519 1.228 4.400 hybrid contribution -1.431 1.079 -0.080 1.794 sum 1.962 -1.439 1.149 2.691 Atomic orbital electron populations 1.20028 0.85928 1.01626 1.03421 1.25390 1.02156 0.93393 1.17180 1.19083 0.86861 0.95905 1.02348 1.24032 0.92090 0.96809 1.02436 1.86513 1.33037 1.36640 1.79401 0.93062 0.86540 0.73675 0.78539 1.65612 1.16754 1.17097 1.28876 1.23327 0.92029 0.91359 0.98784 1.45744 0.99713 1.05767 1.77158 1.21913 0.88204 0.92818 1.02426 1.22186 0.99496 0.78318 0.98714 0.88951 1.23436 0.94109 1.04355 0.93994 1.21459 0.95330 0.96663 0.94699 0.88734 1.19824 0.98709 0.95067 0.94093 1.21238 0.99536 0.92477 1.00827 1.21450 0.98779 0.99869 0.94537 1.21448 1.00539 0.97748 0.95869 1.21408 0.99307 0.93564 1.00644 1.21289 0.99664 0.99637 0.94333 1.23514 0.96752 1.01903 0.95955 1.83859 0.95964 1.09908 1.74067 0.91934 0.90700 0.90268 0.88272 0.75098 1.24933 1.19999 0.92402 0.90347 0.88926 0.86573 0.88740 0.84273 0.84642 0.85074 0.85161 0.85642 0.91696 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.22 8.91 71.24 0.63 0.41 16 2 C -0.26 -1.97 6.50 24.58 0.16 -1.81 16 3 C 0.09 0.72 5.95 41.41 0.25 0.97 16 4 C -0.04 -0.15 2.93 71.24 0.21 0.06 16 5 O -0.55 -1.47 9.80 -148.98 -1.46 -2.93 16 6 Si 0.78 3.12 32.09 68.60 2.20 5.32 16 7 N -0.56 -4.53 8.08 -189.87 -1.53 -6.07 16 8 C 0.31 1.82 7.46 179.32 1.34 3.16 16 9 N -0.56 -0.41 3.11 -708.61 -2.20 -2.62 16 10 C 0.09 -0.21 10.00 127.77 1.28 1.06 16 11 C 0.12 -0.37 3.99 45.52 0.18 -0.19 16 12 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 13 C -0.12 0.76 6.58 31.12 0.20 0.97 16 14 C -0.06 0.21 3.75 -11.01 -0.04 0.17 16 15 H 0.09 -0.21 7.97 -2.39 -0.02 -0.23 16 16 C -0.08 0.05 5.29 -19.87 -0.11 -0.05 16 17 C -0.12 0.19 8.60 22.27 0.19 0.38 16 18 C -0.13 0.06 10.05 22.27 0.22 0.28 16 19 C -0.14 -0.08 10.05 22.27 0.22 0.14 16 20 C -0.13 -0.14 10.05 22.27 0.22 0.08 16 21 C -0.13 -0.12 9.71 22.27 0.22 0.09 16 22 C -0.14 0.40 6.67 31.12 0.21 0.61 16 23 S 0.11 0.54 20.94 -56.49 -1.18 -0.65 16 24 H 0.06 0.15 8.14 -2.39 -0.02 0.14 16 25 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.08 0.44 6.74 -2.39 -0.02 0.42 16 27 H 0.10 -0.03 7.96 -2.39 -0.02 -0.05 16 28 H 0.40 -2.31 8.74 -74.06 -0.65 -2.96 16 29 H -0.32 -4.45 7.11 99.48 0.71 -3.74 16 30 H -0.27 -1.39 7.11 99.48 0.71 -0.68 16 31 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.08 -0.03 7.46 -2.39 -0.02 -0.05 16 33 H 0.09 -0.59 5.62 -2.39 -0.01 -0.61 16 34 H 0.12 -0.97 6.32 -2.39 -0.02 -0.99 16 35 H 0.09 -0.70 5.82 -2.39 -0.01 -0.71 16 36 H 0.14 -0.81 6.68 -2.91 -0.02 -0.83 16 37 H 0.14 -0.54 8.06 -2.91 -0.02 -0.56 16 38 H 0.13 -0.32 8.06 -2.91 -0.02 -0.34 16 39 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 40 H 0.13 -0.14 8.06 -2.91 -0.02 -0.16 16 41 H 0.06 0.04 7.01 -2.39 -0.02 0.02 16 42 H 0.11 -0.46 7.71 -2.39 -0.02 -0.48 16 Total: 0.00 -14.65 347.54 1.64 -13.01 By element: Atomic # 1 Polarization: -12.82 SS G_CDS: 0.43 Total: -12.40 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 5.39 Total: 6.33 kcal Atomic # 7 Polarization: -4.95 SS G_CDS: -3.74 Total: -8.69 kcal Atomic # 8 Polarization: -1.47 SS G_CDS: -1.46 Total: -2.93 kcal Atomic # 14 Polarization: 3.12 SS G_CDS: 2.20 Total: 5.32 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -1.18 Total: -0.65 kcal Total: -14.65 1.64 -13.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14797358_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.466 kcal (2) G-P(sol) polarization free energy of solvation -14.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds