Wall clock time and date at job start Mon Mar 8 2021 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.39148 * 111.00087 * 2 1 4 4 N 1.32329 * 119.72065 * 236.04833 * 3 2 1 5 5 C 1.32007 * 121.64962 * 179.97438 * 4 3 2 6 6 C 1.37988 * 120.89891 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.32558 * 180.02562 * 6 5 4 8 8 O 1.42906 * 109.46725 * 120.00584 * 7 6 5 9 9 Si 1.86294 * 109.47245 * 0.02562 * 7 6 5 10 10 C 1.38908 * 119.34545 * 0.02562 * 6 5 4 11 11 C 1.38446 * 118.48290 * 359.74334 * 10 6 5 12 12 F 1.35099 * 120.46977 * 180.27052 * 11 10 6 13 13 C 1.46908 * 111.00234 * 236.04997 * 2 1 3 14 14 H 1.09000 * 112.84854 * 60.13347 * 13 2 1 15 15 C 1.53777 * 113.61794 * 191.33336 * 13 2 1 16 16 C 1.53781 * 87.07981 * 89.11242 * 15 13 2 17 17 H 1.08999 * 113.61954 * 270.88110 * 16 15 13 18 18 C 1.50705 * 113.61146 * 140.06496 * 16 15 13 19 19 C 1.38237 * 120.00177 * 299.72929 * 18 16 15 20 20 C 1.38228 * 119.99883 * 179.76614 * 19 18 16 21 21 C 1.38234 * 120.00141 * 0.48360 * 20 19 18 22 22 C 1.38235 * 120.00083 * 359.79085 * 21 20 19 23 23 C 1.38234 * 119.99897 * 359.95695 * 22 21 20 24 24 C 1.53771 * 87.08250 * 25.43328 * 16 15 13 25 25 H 1.09003 * 109.47224 * 177.46706 * 1 2 3 26 26 H 1.08997 * 109.47661 * 57.46728 * 1 2 3 27 27 H 1.08998 * 109.47536 * 297.46377 * 1 2 3 28 28 H 1.08001 * 119.55145 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.46812 * 240.00065 * 7 6 5 30 30 H 0.96700 * 113.99404 * 299.99701 * 8 7 6 31 31 H 1.48501 * 109.99817 * 58.67927 * 9 7 6 32 32 H 1.48494 * 109.99756 * 179.97438 * 9 7 6 33 33 H 1.07998 * 120.75678 * 179.97438 * 10 6 5 34 34 H 1.08999 * 113.61633 * 203.66668 * 15 13 2 35 35 H 1.09001 * 113.61021 * 334.48355 * 15 13 2 36 36 H 1.08000 * 119.99719 * 359.97438 * 19 18 16 37 37 H 1.08005 * 120.00206 * 180.25280 * 20 19 18 38 38 H 1.08003 * 120.00417 * 179.77213 * 21 20 19 39 39 H 1.07996 * 120.00072 * 179.97438 * 22 21 20 40 40 H 1.08006 * 120.00324 * 180.02562 * 23 22 21 41 41 H 1.08998 * 113.61651 * 220.01255 * 24 16 15 42 42 H 1.09003 * 113.61635 * 89.11422 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9676 1.2990 0.0000 4 7 2.8019 1.6815 -0.9533 5 6 3.2975 2.9044 -0.9904 6 6 2.9602 3.8352 -0.0292 7 6 3.5332 5.2280 -0.0844 8 8 2.4700 6.1763 -0.1957 9 14 4.6567 5.3791 -1.5627 10 6 2.0873 3.4757 0.9898 11 6 1.5795 2.1878 1.0005 12 9 0.7232 1.7971 1.9697 13 6 1.9954 -0.7659 -1.1377 14 1 1.6801 -0.3641 -2.1006 15 6 3.5059 -1.0403 -1.0494 16 6 3.1482 -2.3240 -0.2821 17 1 3.0728 -2.1818 0.7960 18 6 4.0001 -3.5091 -0.6577 19 6 4.0070 -3.9701 -1.9609 20 6 4.7921 -5.0540 -2.3064 21 6 5.5627 -5.6833 -1.3467 22 6 5.5514 -5.2259 -0.0423 23 6 4.7703 -4.1386 0.3022 24 6 1.7916 -2.2844 -1.0050 25 1 -0.3634 -1.0267 -0.0454 26 1 -0.3634 0.5526 -0.8664 27 1 -0.3634 0.4739 0.9118 28 1 3.9762 3.1803 -1.7839 29 1 4.1008 5.4236 0.8254 30 1 1.9218 6.0618 -0.9840 31 1 3.9017 5.0836 -2.8068 32 1 5.2277 6.7483 -1.6287 33 1 1.8082 4.1859 1.7541 34 1 3.9734 -1.2255 -2.0165 35 1 4.0483 -0.3088 -0.4504 36 1 3.4016 -3.4812 -2.7098 37 1 4.8007 -5.4117 -3.3255 38 1 6.1733 -6.5325 -1.6158 39 1 6.1531 -5.7177 0.7077 40 1 4.7618 -3.7809 1.3213 41 1 0.9497 -2.5581 -0.3691 42 1 1.7903 -2.8098 -1.9601 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14797358_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:33:10 Heat of formation + Delta-G solvation = 47.108781 kcal Electronic energy + Delta-G solvation = -25994.429839 eV Core-core repulsion = 22243.404082 eV Total energy + Delta-G solvation = -3751.025757 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.10470 -42.05942 -40.87193 -39.39684 -38.02369 -36.39678 -33.51585 -32.15259 -31.76984 -31.41307 -28.23320 -26.73753 -26.31682 -25.31947 -24.72471 -23.49218 -22.93088 -22.03591 -20.02618 -19.11809 -18.40744 -18.33185 -17.87386 -17.61756 -17.19899 -16.67338 -16.28613 -16.20141 -15.92647 -15.84963 -15.48755 -15.42317 -14.82538 -14.47413 -14.40948 -14.37384 -14.10814 -13.94363 -13.90667 -13.68027 -13.28800 -12.86538 -12.76538 -12.60822 -12.45969 -12.22169 -12.09069 -11.67353 -11.53949 -11.27811 -11.01866 -10.78909 -10.63406 -10.57724 -9.78680 -9.50216 -9.19690 -4.92383 -0.29655 -0.07680 0.47634 0.53270 1.25313 1.59387 1.95968 2.13904 2.40684 2.87946 2.98397 3.15910 3.33831 3.47791 3.53222 3.63360 3.74357 3.80107 3.89752 4.05138 4.08535 4.18226 4.19074 4.29755 4.30826 4.36376 4.40711 4.47819 4.60260 4.64515 4.69394 4.70664 4.76408 4.83238 4.86258 4.95762 5.09211 5.11123 5.17793 5.21115 5.25093 5.26679 5.60972 5.65540 5.67519 5.80545 5.92041 6.16264 6.43737 6.66873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.467 5.467 3 C 0.288 3.712 4 N -0.493 5.493 5 C 0.122 3.878 6 C -0.166 4.166 7 C -0.071 4.071 8 O -0.546 6.546 9 Si 0.764 3.236 10 C -0.061 4.061 11 C 0.016 3.984 12 F -0.131 7.131 13 C 0.070 3.930 14 H 0.068 0.932 15 C -0.096 4.096 16 C -0.066 4.066 17 H 0.089 0.911 18 C -0.076 4.076 19 C -0.124 4.124 20 C -0.128 4.128 21 C -0.138 4.138 22 C -0.130 4.130 23 C -0.133 4.133 24 C -0.118 4.118 25 H 0.100 0.900 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.185 0.815 29 H 0.133 0.867 30 H 0.387 0.613 31 H -0.276 1.276 32 H -0.298 1.298 33 H 0.159 0.841 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.010 -0.774 -2.180 2.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.184 5.184 3 C 0.054 3.946 4 N -0.206 5.206 5 C -0.036 4.036 6 C -0.170 4.170 7 C -0.181 4.181 8 O -0.354 6.354 9 Si 0.668 3.332 10 C -0.087 4.087 11 C -0.008 4.008 12 F -0.110 7.110 13 C -0.037 4.037 14 H 0.086 0.914 15 C -0.134 4.134 16 C -0.084 4.084 17 H 0.107 0.893 18 C -0.076 4.076 19 C -0.142 4.142 20 C -0.146 4.146 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.155 4.155 25 H 0.119 0.881 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.201 0.799 29 H 0.151 0.849 30 H 0.237 0.763 31 H -0.202 1.202 32 H -0.226 1.226 33 H 0.177 0.823 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.095 0.905 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.707 -1.101 -2.551 3.261 hybrid contribution -1.739 1.183 0.351 2.132 sum -0.032 0.081 -2.200 2.202 Atomic orbital electron populations 1.22696 0.82622 1.04956 1.02690 1.59026 1.10011 1.07224 1.42143 1.20097 0.94617 0.89531 0.90337 1.67828 1.11970 1.18796 1.21994 1.22859 0.96181 0.87317 0.97213 1.21134 1.00667 0.98725 0.96446 1.25123 0.94799 0.84140 1.13995 1.86601 1.44712 1.54830 1.49224 0.94104 0.82650 0.82805 0.73631 1.21555 0.94571 0.93617 0.98967 1.18273 0.97492 0.94752 0.90320 1.91456 1.67534 1.91179 1.60782 1.22530 0.97165 0.93490 0.90546 0.91420 1.22864 0.94462 0.95355 1.00687 1.21452 0.94785 0.92249 0.99918 0.89316 1.19922 0.97349 0.96574 0.93800 1.21207 0.99763 0.97185 0.96067 1.21442 0.96634 0.96193 1.00283 1.21439 0.99968 1.00733 0.93499 1.21408 0.99305 0.96954 0.97120 1.21284 0.97512 0.96611 0.99737 1.23184 0.97095 0.93472 1.01750 0.88095 0.94002 0.89710 0.79908 0.84893 0.76314 1.20192 1.22600 0.82297 0.88808 0.92074 0.84685 0.84567 0.84869 0.85020 0.85819 0.90458 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.12 127.69 1.16 1.16 16 2 N -0.47 -1.18 4.58 -699.42 -3.21 -4.38 16 3 C 0.29 1.11 6.00 133.08 0.80 1.90 16 4 N -0.49 -1.24 7.60 -193.03 -1.47 -2.70 16 5 C 0.12 -0.18 9.84 84.61 0.83 0.65 16 6 C -0.17 0.33 5.40 -19.76 -0.11 0.23 16 7 C -0.07 0.28 2.84 71.24 0.20 0.48 16 8 O -0.55 0.37 12.78 -148.98 -1.90 -1.54 16 9 Si 0.76 -3.84 29.82 68.60 2.05 -1.80 16 10 C -0.06 -0.03 9.75 22.48 0.22 0.19 16 11 C 0.02 0.06 7.01 22.58 0.16 0.22 16 12 F -0.13 -0.74 14.80 44.97 0.67 -0.08 16 13 C 0.07 0.04 2.58 45.44 0.12 0.15 16 14 H 0.07 0.08 8.12 -2.39 -0.02 0.06 16 15 C -0.10 -0.12 6.48 31.12 0.20 0.08 16 16 C -0.07 -0.08 3.89 -11.02 -0.04 -0.13 16 17 H 0.09 0.31 8.09 -2.39 -0.02 0.29 16 18 C -0.08 -0.21 5.29 -19.86 -0.11 -0.32 16 19 C -0.12 -0.18 8.63 22.27 0.19 0.01 16 20 C -0.13 -0.19 10.05 22.27 0.22 0.03 16 21 C -0.14 -0.30 10.05 22.27 0.22 -0.08 16 22 C -0.13 -0.38 10.05 22.27 0.22 -0.16 16 23 C -0.13 -0.49 9.71 22.27 0.22 -0.28 16 24 C -0.12 0.16 6.97 31.12 0.22 0.37 16 25 H 0.10 -0.31 6.82 -2.39 -0.02 -0.33 16 26 H 0.04 -0.01 8.13 -2.39 -0.02 -0.03 16 27 H 0.08 0.09 5.79 -2.39 -0.01 0.07 16 28 H 0.18 -1.17 4.88 -2.91 -0.01 -1.19 16 29 H 0.13 -0.77 7.96 -2.39 -0.02 -0.78 16 30 H 0.39 -2.37 8.70 -74.06 -0.64 -3.01 16 31 H -0.28 0.44 7.11 99.48 0.71 1.14 16 32 H -0.30 -0.89 7.11 99.48 0.71 -0.19 16 33 H 0.16 -0.21 8.06 -2.91 -0.02 -0.23 16 34 H 0.09 0.02 7.73 -2.39 -0.02 0.00 16 35 H 0.06 0.27 7.03 -2.39 -0.02 0.25 16 36 H 0.14 -0.30 6.65 -2.91 -0.02 -0.31 16 37 H 0.14 -0.32 8.06 -2.91 -0.02 -0.34 16 38 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 39 H 0.13 -0.05 8.06 -2.91 -0.02 -0.07 16 40 H 0.12 0.23 8.06 -2.91 -0.02 0.21 16 41 H 0.08 -0.11 7.02 -2.39 -0.02 -0.13 16 42 H 0.10 -0.35 6.31 -2.39 -0.02 -0.37 16 Total: 0.00 -12.46 340.94 1.31 -11.15 By element: Atomic # 1 Polarization: -5.61 SS G_CDS: 0.44 Total: -5.17 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 4.73 Total: 4.52 kcal Atomic # 7 Polarization: -2.41 SS G_CDS: -4.67 Total: -7.09 kcal Atomic # 8 Polarization: 0.37 SS G_CDS: -1.90 Total: -1.54 kcal Atomic # 9 Polarization: -0.74 SS G_CDS: 0.67 Total: -0.08 kcal Atomic # 14 Polarization: -3.84 SS G_CDS: 2.05 Total: -1.80 kcal Total: -12.46 1.31 -11.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14797358_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.259 kcal (2) G-P(sol) polarization free energy of solvation -12.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds