Wall clock time and date at job start Mon Mar 8 2021 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 117.00171 * 2 1 4 4 O 1.20823 * 120.00386 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00098 * 179.97438 * 3 2 1 6 6 N 1.46898 * 109.47378 * 185.47658 * 5 3 2 7 7 C 1.46902 * 110.99845 * 62.44927 * 6 5 3 8 8 C 1.50704 * 109.46815 * 66.05000 * 7 6 5 9 9 C 1.38242 * 119.99582 * 270.27940 * 8 7 6 10 10 C 1.38235 * 119.99313 * 180.27814 * 9 8 7 11 11 C 1.38234 * 120.00329 * 359.46337 * 10 9 8 12 12 C 1.38233 * 120.00123 * 0.25649 * 11 10 9 13 13 C 1.38231 * 120.00175 * 89.99655 * 8 7 6 14 14 C 1.46900 * 111.00285 * 298.49758 * 6 5 3 15 15 H 1.09012 * 112.84972 * 77.33518 * 14 6 5 16 16 C 1.53782 * 113.61768 * 208.52819 * 14 6 5 17 17 C 1.53958 * 87.01739 * 139.95225 * 16 14 6 18 18 H 1.09004 * 113.53478 * 89.19167 * 17 16 14 19 19 N 1.46497 * 113.74227 * 220.05680 * 17 16 14 20 20 C 1.38412 * 120.00143 * 252.59697 * 19 17 16 21 21 N 1.32497 * 119.21539 * 359.73846 * 20 19 17 22 22 C 1.32277 * 120.73791 * 179.71886 * 21 20 19 23 23 C 1.38599 * 119.19645 * 0.53549 * 22 21 20 24 24 C 1.50705 * 120.72096 * 179.71275 * 23 22 21 25 25 O 1.42901 * 109.46844 * 245.02362 * 24 23 22 26 26 Si 1.86294 * 109.46992 * 5.02383 * 24 23 22 27 27 C 1.38605 * 118.56277 * 359.73634 * 23 22 21 28 28 N 1.32284 * 119.19164 * 359.97438 * 27 23 22 29 29 C 1.53780 * 113.61467 * 306.14277 * 14 6 5 30 30 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46635 * 299.99605 * 1 2 3 32 32 H 1.08994 * 109.47054 * 59.99503 * 1 2 3 33 33 H 1.09005 * 109.46786 * 65.48066 * 5 3 2 34 34 H 1.08999 * 109.47424 * 305.48398 * 5 3 2 35 35 H 1.08996 * 109.47597 * 306.04856 * 7 6 5 36 36 H 1.08995 * 109.47182 * 186.04219 * 7 6 5 37 37 H 1.07990 * 120.00061 * 0.02562 * 9 8 7 38 38 H 1.08004 * 119.99946 * 179.74220 * 10 9 8 39 39 H 1.07999 * 120.00106 * 180.27737 * 11 10 9 40 40 H 1.07996 * 119.99932 * 180.02562 * 12 11 10 41 41 H 1.08003 * 119.99932 * 0.02562 * 13 8 7 42 42 H 1.08994 * 113.61429 * 254.53080 * 16 14 6 43 43 H 1.08995 * 113.61353 * 25.43842 * 16 14 6 44 44 H 0.96998 * 119.99823 * 72.59893 * 19 17 16 45 45 H 1.08001 * 120.39885 * 180.29706 * 22 21 20 46 46 H 1.08996 * 109.47411 * 125.02095 * 24 23 22 47 47 H 0.96703 * 113.99734 * 179.97438 * 25 24 23 48 48 H 1.48498 * 110.00309 * 178.68177 * 26 24 23 49 49 H 1.48506 * 110.00192 * 300.00224 * 26 24 23 50 50 H 1.07999 * 120.40599 * 180.02562 * 27 23 22 51 51 H 1.08994 * 113.61427 * 334.56137 * 29 14 6 52 52 H 1.09000 * 113.61673 * 105.38391 * 29 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9832 2.6772 0.1326 7 6 3.5299 3.2430 1.4103 8 6 4.2380 2.5501 2.5459 9 6 3.6893 1.4148 3.1125 10 6 4.3359 0.7825 4.1580 11 6 5.5367 1.2790 4.6295 12 6 6.0884 2.4109 4.0590 13 6 5.4391 3.0463 3.0170 14 6 3.4997 3.4790 -0.9993 15 1 2.4418 3.7295 -0.9192 16 6 4.3952 4.6855 -1.3267 17 6 4.1532 4.3599 -2.8119 18 1 3.2744 4.8525 -3.2279 19 7 5.3436 4.5158 -3.6515 20 6 5.4365 5.5819 -4.5294 21 7 4.4375 6.4492 -4.6016 22 6 4.4969 7.4819 -5.4260 23 6 5.6162 7.6438 -6.2272 24 6 5.7172 8.8043 -7.1834 25 8 5.7338 8.3152 -8.5259 26 14 4.2512 9.9301 -6.9506 27 6 6.6405 6.7150 -6.1304 28 7 6.5202 5.7081 -5.2809 29 6 3.8957 2.9091 -2.3716 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 3.9519 0.8677 -0.9342 34 1 3.9601 0.6983 0.8376 35 1 2.4543 3.0984 1.5106 36 1 3.7573 4.3086 1.4367 37 1 2.7534 1.0243 2.7411 38 1 3.9051 -0.1021 4.6035 39 1 6.0442 0.7824 5.4433 40 1 7.0267 2.7985 4.4272 41 1 5.8699 3.9308 2.5716 42 1 3.9730 5.6404 -1.0137 43 1 5.4317 4.5572 -1.0150 44 1 6.0666 3.8720 -3.5921 45 1 3.6814 8.1882 -5.4769 46 1 6.6352 9.3581 -6.9870 47 1 5.7971 9.0090 -9.1965 48 1 4.3551 11.0951 -7.8655 49 1 2.9930 9.1870 -7.2153 50 1 7.5263 6.8127 -6.7404 51 1 4.7953 2.2944 -2.3460 52 1 3.0711 2.4309 -2.9002 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14927548_12175864.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:57 Heat of formation + Delta-G solvation = 27.969926 kcal Electronic energy + Delta-G solvation = -35347.471590 eV Core-core repulsion = 30702.014683 eV Total energy + Delta-G solvation = -4645.456907 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.183 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.22663 -41.99474 -40.48971 -39.97661 -38.20065 -37.83223 -36.69354 -35.15736 -34.70146 -32.61870 -32.05112 -31.75239 -30.02960 -28.11155 -27.10278 -26.50382 -26.07602 -25.74611 -23.79659 -23.46357 -22.82383 -22.41955 -21.52460 -20.80286 -19.33668 -18.85278 -18.74688 -18.44737 -17.87741 -17.78779 -17.29136 -17.09239 -16.69259 -16.42540 -16.36131 -16.14466 -16.01476 -15.75184 -15.55613 -15.32280 -15.12432 -14.70358 -14.59245 -14.48050 -14.25604 -13.95792 -13.88282 -13.62453 -13.43913 -13.40105 -13.29232 -13.10142 -12.86760 -12.77807 -12.40823 -12.32779 -12.17779 -12.02837 -11.92153 -11.89629 -11.78918 -11.69580 -11.66699 -11.53441 -11.11555 -10.63997 -10.02573 -9.83777 -9.77089 -9.45058 -9.07342 -4.91808 0.04646 0.14202 0.38995 0.50115 1.04122 1.30923 1.60094 1.72166 1.81857 1.95842 2.60980 2.74592 3.03316 3.15610 3.41206 3.43332 3.49785 3.65376 3.70714 3.76520 3.78386 3.87907 3.91040 3.92267 4.01007 4.11249 4.14664 4.18076 4.21619 4.25283 4.27201 4.36183 4.45460 4.57451 4.60502 4.61594 4.65069 4.67901 4.71304 4.76497 4.78693 4.79567 4.96467 5.03147 5.07160 5.11228 5.15589 5.32704 5.37805 5.54004 5.60708 5.64621 5.75858 5.78249 5.91279 6.04122 6.11196 6.41942 6.62439 6.64034 7.27442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.430 3.570 4 O -0.529 6.529 5 C 0.054 3.946 6 N -0.482 5.482 7 C 0.084 3.916 8 C -0.087 4.087 9 C -0.126 4.126 10 C -0.126 4.126 11 C -0.127 4.127 12 C -0.126 4.126 13 C -0.105 4.105 14 C 0.051 3.949 15 H 0.082 0.918 16 C -0.126 4.126 17 C 0.144 3.856 18 H 0.107 0.893 19 N -0.676 5.676 20 C 0.553 3.447 21 N -0.578 5.578 22 C 0.191 3.809 23 C -0.249 4.249 24 C -0.058 4.058 25 O -0.560 6.560 26 Si 0.752 3.248 27 C 0.213 3.787 28 N -0.588 5.588 29 C -0.132 4.132 30 H 0.125 0.875 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.139 0.861 34 H 0.125 0.875 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.420 0.580 45 H 0.182 0.818 46 H 0.104 0.896 47 H 0.397 0.603 48 H -0.281 1.281 49 H -0.297 1.297 50 H 0.186 0.814 51 H 0.110 0.890 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 0.435 1.797 2.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.273 3.727 4 O -0.419 6.419 5 C -0.075 4.075 6 N -0.204 5.204 7 C -0.043 4.043 8 C -0.088 4.088 9 C -0.145 4.145 10 C -0.144 4.144 11 C -0.145 4.145 12 C -0.144 4.144 13 C -0.124 4.124 14 C -0.058 4.058 15 H 0.100 0.900 16 C -0.166 4.166 17 C 0.038 3.962 18 H 0.125 0.875 19 N -0.311 5.311 20 C 0.196 3.804 21 N -0.301 5.301 22 C 0.024 3.976 23 C -0.257 4.257 24 C -0.168 4.168 25 O -0.370 6.370 26 Si 0.657 3.343 27 C 0.046 3.954 28 N -0.310 5.310 29 C -0.170 4.170 30 H 0.143 0.857 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.156 0.844 34 H 0.143 0.857 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.259 0.741 45 H 0.198 0.802 46 H 0.122 0.878 47 H 0.248 0.752 48 H -0.207 1.207 49 H -0.225 1.225 50 H 0.203 0.797 51 H 0.128 0.872 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.098 -0.281 2.484 2.730 hybrid contribution -0.708 0.401 -1.744 1.924 sum 0.391 0.120 0.740 0.846 Atomic orbital electron populations 1.23458 0.75433 1.05358 1.02222 1.86558 1.24529 1.33708 1.83404 1.25877 0.94195 0.81307 0.71297 1.90624 1.68061 1.36654 1.46573 1.22435 0.84130 0.93077 1.07895 1.62752 1.55705 1.00128 1.01815 1.21180 0.97400 0.99220 0.86475 1.19792 0.95923 0.96023 0.97028 1.21089 0.99919 0.95979 0.97515 1.21356 0.95825 1.00500 0.96714 1.21460 0.95998 0.96662 1.00391 1.21456 1.00607 0.95952 0.96405 1.21199 0.94321 1.00357 0.96514 1.23104 0.98251 0.95240 0.89173 0.90048 1.23490 1.01010 0.97322 0.94774 1.22266 0.87835 0.97006 0.89106 0.87527 1.44178 1.22175 1.25167 1.39626 1.19680 0.85369 0.87822 0.87549 1.67947 1.29583 1.06382 1.26176 1.23120 0.95382 0.91802 0.87323 1.20802 0.98470 1.02562 1.03830 1.24557 1.11769 0.98353 0.82165 1.86546 1.96330 1.38565 1.15553 0.94357 0.74142 0.75724 0.90045 1.23182 0.97626 0.85335 0.89303 1.68008 1.25273 1.26299 1.11429 1.23482 1.02963 0.96203 0.94369 0.85683 0.92253 0.92191 0.84364 0.85700 0.93086 0.89186 0.87090 0.84785 0.84564 0.84537 0.85113 0.91295 0.88615 0.74127 0.80179 0.87821 0.75230 1.20702 1.22518 0.79731 0.87178 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.76 10.56 -51.36 -0.54 -1.31 16 3 C 0.43 1.13 6.96 71.24 0.50 1.63 16 4 O -0.53 -3.84 11.65 21.97 0.26 -3.58 16 5 C 0.05 -0.08 5.31 85.56 0.45 0.37 16 6 N -0.48 0.19 4.67 -876.96 -4.10 -3.90 16 7 C 0.08 0.15 4.80 85.56 0.41 0.56 16 8 C -0.09 -0.17 4.89 -19.86 -0.10 -0.27 16 9 C -0.13 -0.24 7.91 22.27 0.18 -0.07 16 10 C -0.13 -0.11 10.05 22.27 0.22 0.12 16 11 C -0.13 -0.05 10.05 22.27 0.22 0.18 16 12 C -0.13 -0.06 10.05 22.27 0.22 0.16 16 13 C -0.11 -0.14 9.70 22.27 0.22 0.08 16 14 C 0.05 0.00 2.36 45.44 0.11 0.11 16 15 H 0.08 0.36 6.16 -2.38 -0.01 0.35 16 16 C -0.13 0.03 7.58 31.18 0.24 0.27 16 17 C 0.14 0.11 4.25 45.58 0.19 0.30 16 18 H 0.11 0.41 7.36 -2.38 -0.02 0.40 16 19 N -0.68 -1.75 5.51 -327.64 -1.81 -3.55 16 20 C 0.55 4.03 8.43 261.49 2.20 6.24 16 21 N -0.58 -4.24 9.13 -197.99 -1.81 -6.04 16 22 C 0.19 0.72 9.92 84.71 0.84 1.56 16 23 C -0.25 -0.60 5.40 -19.69 -0.11 -0.71 16 24 C -0.06 0.14 2.82 71.24 0.20 0.34 16 25 O -0.56 -0.16 12.82 -148.98 -1.91 -2.07 16 26 Si 0.75 -2.50 29.92 68.60 2.05 -0.44 16 27 C 0.21 0.87 10.99 84.71 0.93 1.80 16 28 N -0.59 -4.46 10.46 -197.98 -2.07 -6.53 16 29 C -0.13 0.27 6.30 31.12 0.20 0.47 16 30 H 0.12 -0.79 8.14 -2.39 -0.02 -0.81 16 31 H 0.06 -0.03 8.13 -2.38 -0.02 -0.05 16 32 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 33 H 0.14 -0.71 6.87 -2.38 -0.02 -0.73 16 34 H 0.13 -0.24 5.97 -2.39 -0.01 -0.26 16 35 H 0.05 0.27 5.62 -2.39 -0.01 0.26 16 36 H 0.09 0.12 7.93 -2.39 -0.02 0.10 16 37 H 0.11 0.17 7.68 -2.92 -0.02 0.15 16 38 H 0.13 -0.32 8.06 -2.91 -0.02 -0.34 16 39 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 40 H 0.14 -0.40 8.06 -2.91 -0.02 -0.43 16 41 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 42 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.10 -0.01 8.14 -2.39 -0.02 -0.02 16 44 H 0.42 0.03 8.84 -92.71 -0.82 -0.79 16 45 H 0.18 -0.16 5.04 -2.91 -0.01 -0.18 16 46 H 0.10 -0.76 7.96 -2.39 -0.02 -0.78 16 47 H 0.40 -3.08 8.74 -74.06 -0.65 -3.73 16 48 H -0.28 -0.16 7.11 99.48 0.71 0.54 16 49 H -0.30 -1.24 7.06 99.48 0.70 -0.53 16 50 H 0.19 -0.12 8.06 -2.91 -0.02 -0.15 16 51 H 0.11 -0.50 7.74 -2.39 -0.02 -0.52 16 52 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: 0.00 -19.30 422.26 -2.06 -21.36 By element: Atomic # 1 Polarization: -7.77 SS G_CDS: -0.46 Total: -8.23 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 8.33 Total: 14.30 kcal Atomic # 7 Polarization: -10.25 SS G_CDS: -9.78 Total: -20.03 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -2.20 Total: -6.96 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: 2.05 Total: -0.44 kcal Total: -19.30 -2.06 -21.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14927548_12175864.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.332 kcal (2) G-P(sol) polarization free energy of solvation -19.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds