Wall clock time and date at job start Mon Mar 8 2021 06:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 116.99630 * 2 1 4 4 O 1.20829 * 120.00278 * 359.97438 * 3 2 1 5 5 C 1.50708 * 120.00167 * 179.97438 * 3 2 1 6 6 N 1.46893 * 109.47213 * 185.76541 * 5 3 2 7 7 C 1.46900 * 111.00158 * 62.75990 * 6 5 3 8 8 C 1.50702 * 109.47156 * 66.04110 * 7 6 5 9 9 C 1.38236 * 120.00165 * 269.72882 * 8 7 6 10 10 C 1.38232 * 119.99854 * 179.81067 * 9 8 7 11 11 C 1.38234 * 120.00090 * 0.42447 * 10 9 8 12 12 C 1.38242 * 119.99874 * 359.80473 * 11 10 9 13 13 C 1.38230 * 119.99910 * 0.02562 * 12 11 10 14 14 C 1.46902 * 111.00040 * 298.80217 * 6 5 3 15 15 H 1.08999 * 112.90446 * 75.47645 * 14 6 5 16 16 C 1.53957 * 113.66378 * 206.77096 * 14 6 5 17 17 C 1.53780 * 87.10891 * 139.89224 * 16 14 6 18 18 H 1.08996 * 113.69116 * 89.19728 * 17 16 14 19 19 N 1.46510 * 113.61507 * 220.09051 * 17 16 14 20 20 C 1.39000 * 119.99559 * 252.49736 * 19 17 16 21 21 N 1.32399 * 119.69998 * 180.02562 * 20 19 17 22 22 C 1.31977 * 121.61848 * 179.97438 * 21 20 19 23 23 C 1.38021 * 120.86000 * 359.97438 * 22 21 20 24 24 C 1.50699 * 120.33652 * 180.02562 * 23 22 21 25 25 O 1.42898 * 109.47137 * 245.00220 * 24 23 22 26 26 Si 1.86301 * 109.46902 * 5.00383 * 24 23 22 27 27 C 1.38882 * 119.32564 * 0.02562 * 23 22 21 28 28 C 1.38295 * 118.50944 * 359.73276 * 27 23 22 29 29 C 1.53780 * 113.61305 * 304.21971 * 14 6 5 30 30 H 1.08999 * 109.46943 * 60.00315 * 1 2 3 31 31 H 1.08998 * 109.46850 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47215 * 299.99645 * 1 2 3 33 33 H 1.09003 * 109.47079 * 65.76259 * 5 3 2 34 34 H 1.08997 * 109.46696 * 305.77052 * 5 3 2 35 35 H 1.08995 * 109.47109 * 186.04541 * 7 6 5 36 36 H 1.09004 * 109.47021 * 306.04160 * 7 6 5 37 37 H 1.08001 * 119.99595 * 0.02562 * 9 8 7 38 38 H 1.08003 * 120.00147 * 180.20659 * 10 9 8 39 39 H 1.08001 * 120.00094 * 179.79404 * 11 10 9 40 40 H 1.07997 * 119.99548 * 179.97438 * 12 11 10 41 41 H 1.08002 * 119.99763 * 179.97438 * 13 12 11 42 42 H 1.08998 * 113.54047 * 25.34503 * 16 14 6 43 43 H 1.09000 * 113.74106 * 254.46980 * 16 14 6 44 44 H 0.96993 * 119.99514 * 72.49940 * 19 17 16 45 45 H 1.07999 * 119.56869 * 179.97438 * 22 21 20 46 46 H 1.09005 * 109.46887 * 124.99924 * 24 23 22 47 47 H 0.96705 * 113.99489 * 179.97438 * 25 24 23 48 48 H 1.48500 * 110.00062 * 299.99631 * 26 24 23 49 49 H 1.48498 * 110.00359 * 61.31369 * 26 24 23 50 50 H 1.08005 * 120.74609 * 179.97438 * 27 23 22 51 51 H 1.07997 * 120.45449 * 180.28597 * 28 27 23 52 52 H 1.08998 * 113.61216 * 105.47227 * 29 14 6 53 53 H 1.08994 * 113.61658 * 334.65445 * 29 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2751 0.0006 6 7 3.9830 2.6768 0.1396 7 6 3.5364 3.2340 1.4233 8 6 4.2508 2.5340 2.5506 9 6 3.7001 1.4013 3.1204 10 6 4.3574 0.7570 4.1517 11 6 5.5611 1.2505 4.6192 12 6 6.1095 2.3859 4.0525 13 6 5.4539 3.0281 3.0188 14 6 3.4929 3.4856 -0.9845 15 1 2.4282 3.7082 -0.9145 16 6 4.3627 4.7204 -1.2828 17 6 4.1479 4.4147 -2.7745 18 1 3.2630 4.8912 -3.1962 19 7 5.3465 4.6146 -3.5931 20 6 5.4252 5.7013 -4.4561 21 7 6.5108 5.8761 -5.1935 22 6 6.6257 6.8941 -6.0255 23 6 5.6096 7.8189 -6.1572 24 6 5.7530 8.9766 -7.1113 25 8 5.7776 10.2008 -6.3745 26 14 7.3397 8.7974 -8.0710 27 6 4.4538 7.6718 -5.4014 28 6 4.3600 6.5924 -4.5419 29 6 3.9214 2.9509 -2.3611 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9516 0.8726 -0.9363 34 1 3.9602 0.6944 0.8347 35 1 3.7632 4.2996 1.4555 36 1 2.4613 3.0880 1.5284 37 1 2.7580 1.0178 2.7574 38 1 3.9288 -0.1298 4.5947 39 1 6.0731 0.7490 5.4272 40 1 7.0497 2.7716 4.4180 41 1 5.8822 3.9154 2.5764 42 1 5.3980 4.6120 -0.9596 43 1 3.9151 5.6607 -0.9609 44 1 6.0848 3.9885 -3.5327 45 1 7.5264 7.0049 -6.6110 46 1 4.9096 8.9849 -7.8018 47 1 5.8685 10.9899 -6.9261 48 1 8.4972 8.7847 -7.1409 49 1 7.3135 7.5436 -8.8663 50 1 3.6446 8.3822 -5.4859 51 1 3.4736 6.4451 -3.9428 52 1 3.1163 2.4619 -2.9095 53 1 4.8358 2.3583 -2.3341 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14927548_13915762.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:33:02 Heat of formation + Delta-G solvation = 10.445747 kcal Electronic energy + Delta-G solvation = -35217.748429 eV Core-core repulsion = 30636.957527 eV Total energy + Delta-G solvation = -4580.790902 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.188 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.19605 -41.53472 -40.48181 -39.99112 -38.14150 -37.68733 -36.68527 -35.04395 -33.53930 -32.53387 -31.84383 -31.33786 -30.02559 -28.13018 -26.99739 -26.53432 -25.87753 -25.01363 -23.78856 -23.49968 -22.54724 -22.28176 -21.49893 -20.76169 -18.95419 -18.75417 -18.49056 -18.18553 -17.90637 -17.75940 -17.31800 -17.11012 -16.67617 -16.42030 -16.36227 -16.08403 -15.75221 -15.59928 -15.57309 -15.07574 -15.04731 -14.70639 -14.52703 -14.29334 -14.25633 -13.98922 -13.90983 -13.83787 -13.61153 -13.47629 -13.35438 -13.12048 -12.90219 -12.83041 -12.46234 -12.37663 -12.23501 -12.05899 -12.03414 -11.95113 -11.77232 -11.69310 -11.56503 -11.09568 -10.87208 -10.70721 -10.18376 -9.87312 -9.80597 -9.47733 -8.78087 -4.95616 0.05766 0.29628 0.35394 0.46431 1.01247 1.32971 1.64940 1.69766 1.96705 1.99628 2.59768 2.66271 3.00756 3.34982 3.37922 3.45421 3.50913 3.67834 3.72084 3.75413 3.81825 3.87123 3.89172 3.94924 4.04605 4.08295 4.11062 4.19812 4.23344 4.24643 4.27189 4.31810 4.39409 4.43461 4.53139 4.57923 4.62730 4.64707 4.65325 4.67739 4.74888 4.75010 4.88547 4.90419 4.98228 5.05054 5.09177 5.11926 5.21582 5.33590 5.43198 5.50434 5.56994 5.61051 5.72333 5.87287 5.95312 6.07561 6.44649 6.59815 6.95293 7.01185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.432 3.568 4 O -0.528 6.528 5 C 0.055 3.945 6 N -0.485 5.485 7 C 0.085 3.915 8 C -0.088 4.088 9 C -0.126 4.126 10 C -0.125 4.125 11 C -0.127 4.127 12 C -0.127 4.127 13 C -0.107 4.107 14 C 0.048 3.952 15 H 0.088 0.912 16 C -0.133 4.133 17 C 0.135 3.865 18 H 0.118 0.882 19 N -0.703 5.703 20 C 0.395 3.605 21 N -0.569 5.569 22 C 0.126 3.874 23 C -0.203 4.203 24 C -0.059 4.059 25 O -0.565 6.565 26 Si 0.768 3.232 27 C -0.009 4.009 28 C -0.238 4.238 29 C -0.130 4.130 30 H 0.061 0.939 31 H 0.125 0.875 32 H 0.059 0.941 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.407 0.593 45 H 0.140 0.860 46 H 0.096 0.904 47 H 0.403 0.597 48 H -0.299 1.299 49 H -0.291 1.291 50 H 0.158 0.842 51 H 0.157 0.843 52 H 0.077 0.923 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 -0.092 -1.249 3.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.275 3.725 4 O -0.418 6.418 5 C -0.075 4.075 6 N -0.207 5.207 7 C -0.042 4.042 8 C -0.088 4.088 9 C -0.144 4.144 10 C -0.143 4.143 11 C -0.145 4.145 12 C -0.145 4.145 13 C -0.125 4.125 14 C -0.060 4.060 15 H 0.106 0.894 16 C -0.173 4.173 17 C 0.029 3.971 18 H 0.135 0.865 19 N -0.334 5.334 20 C 0.159 3.841 21 N -0.287 5.287 22 C -0.030 4.030 23 C -0.209 4.209 24 C -0.170 4.170 25 O -0.375 6.375 26 Si 0.675 3.325 27 C -0.034 4.034 28 C -0.262 4.262 29 C -0.169 4.169 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.078 0.922 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.131 0.869 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.244 0.756 45 H 0.157 0.843 46 H 0.114 0.886 47 H 0.254 0.746 48 H -0.227 1.227 49 H -0.218 1.218 50 H 0.175 0.825 51 H 0.174 0.826 52 H 0.096 0.904 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.327 -1.283 -0.742 1.989 hybrid contribution -1.706 -0.047 0.459 1.767 sum -3.033 -1.330 -0.283 3.324 Atomic orbital electron populations 1.23466 0.75342 1.05386 1.02284 1.86562 1.24607 1.33682 1.83367 1.25830 0.94092 0.81333 0.71289 1.90614 1.68018 1.36593 1.46611 1.22405 0.84280 0.93029 1.07792 1.62731 1.55863 1.00192 1.01910 1.21164 0.97391 0.99180 0.86437 1.19796 0.95856 0.96110 0.97064 1.21096 0.99862 0.95915 0.97559 1.21366 0.95699 1.00447 0.96822 1.21466 0.96076 0.96615 1.00337 1.21452 1.00581 0.95971 0.96501 1.21189 0.94434 1.00313 0.96603 1.23203 0.98455 0.94997 0.89350 0.89442 1.23563 1.01135 0.97398 0.95203 1.22399 0.87818 0.97390 0.89465 0.86466 1.44557 1.20435 1.26041 1.42370 1.18692 0.89211 0.88222 0.88014 1.67075 1.25931 1.24652 1.11021 1.22138 0.97030 0.89969 0.93870 1.20353 0.96882 0.99329 1.04293 1.24506 1.11881 0.84259 0.96362 1.86446 1.97121 1.15742 1.38212 0.94509 0.74024 0.84521 0.79398 1.21493 0.96602 0.94880 0.90446 1.21764 1.00807 0.97713 1.05933 1.23436 1.02940 0.96053 0.94442 0.92046 0.85720 0.92236 0.84472 0.85849 0.89251 0.92980 0.86933 0.84675 0.84535 0.84649 0.85320 0.89163 0.90826 0.75630 0.84311 0.88584 0.74592 1.22725 1.21801 0.82460 0.82597 0.90408 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.37 -0.51 10.57 -51.42 -0.54 -1.05 16 3 C 0.43 0.78 7.03 71.24 0.50 1.28 16 4 O -0.53 -3.16 11.63 21.96 0.26 -2.90 16 5 C 0.05 -0.10 5.36 85.56 0.46 0.36 16 6 N -0.48 0.35 4.67 -876.63 -4.09 -3.74 16 7 C 0.09 0.12 4.81 85.56 0.41 0.53 16 8 C -0.09 -0.18 4.88 -19.87 -0.10 -0.28 16 9 C -0.13 -0.24 7.93 22.27 0.18 -0.06 16 10 C -0.13 -0.12 10.05 22.27 0.22 0.11 16 11 C -0.13 -0.09 10.05 22.27 0.22 0.14 16 12 C -0.13 -0.14 10.05 22.27 0.22 0.09 16 13 C -0.11 -0.20 9.70 22.27 0.22 0.02 16 14 C 0.05 -0.06 2.39 45.50 0.11 0.05 16 15 H 0.09 0.19 6.07 -2.39 -0.01 0.17 16 16 C -0.13 0.21 7.49 31.18 0.23 0.44 16 17 C 0.14 -0.27 4.04 45.52 0.18 -0.09 16 18 H 0.12 -0.38 6.09 -2.39 -0.01 -0.40 16 19 N -0.70 -1.56 5.53 -322.03 -1.78 -3.34 16 20 C 0.40 2.93 7.65 133.07 1.02 3.95 16 21 N -0.57 -6.82 10.39 -193.26 -2.01 -8.83 16 22 C 0.13 1.34 9.84 84.62 0.83 2.17 16 23 C -0.20 -1.36 5.39 -19.76 -0.11 -1.47 16 24 C -0.06 -0.02 2.81 71.24 0.20 0.19 16 25 O -0.57 -0.10 12.82 -148.98 -1.91 -2.01 16 26 Si 0.77 -0.39 29.88 68.60 2.05 1.66 16 27 C -0.01 -0.04 9.83 22.44 0.22 0.18 16 28 C -0.24 -1.00 9.29 22.50 0.21 -0.79 16 29 C -0.13 0.45 6.33 31.12 0.20 0.65 16 30 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 31 H 0.12 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 33 H 0.14 -0.72 6.99 -2.39 -0.02 -0.74 16 34 H 0.12 -0.24 5.99 -2.39 -0.01 -0.25 16 35 H 0.09 0.10 7.87 -2.39 -0.02 0.08 16 36 H 0.05 0.24 5.65 -2.39 -0.01 0.23 16 37 H 0.11 0.14 7.80 -2.91 -0.02 0.11 16 38 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 39 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 40 H 0.14 -0.30 8.06 -2.91 -0.02 -0.32 16 41 H 0.13 -0.01 8.06 -2.91 -0.02 -0.03 16 42 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.07 -0.11 8.14 -2.39 -0.02 -0.12 16 44 H 0.41 0.74 8.85 -92.71 -0.82 -0.08 16 45 H 0.14 1.37 4.87 -2.91 -0.01 1.36 16 46 H 0.10 -0.43 7.96 -2.38 -0.02 -0.45 16 47 H 0.40 -4.25 8.74 -74.05 -0.65 -4.89 16 48 H -0.30 -2.27 7.05 99.48 0.70 -1.57 16 49 H -0.29 -1.56 7.11 99.48 0.71 -0.85 16 50 H 0.16 -0.07 8.06 -2.91 -0.02 -0.09 16 51 H 0.16 -0.15 6.03 -2.91 -0.02 -0.17 16 52 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 53 H 0.10 -0.44 7.85 -2.39 -0.02 -0.46 16 Total: 0.00 -20.38 424.97 -1.87 -22.25 By element: Atomic # 1 Polarization: -10.16 SS G_CDS: -0.48 Total: -10.64 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 6.63 Total: 8.60 kcal Atomic # 7 Polarization: -8.03 SS G_CDS: -7.88 Total: -15.91 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -2.20 Total: -5.96 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: 2.05 Total: 1.66 kcal Total: -20.38 -1.87 -22.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14927548_13915762.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.701 kcal (2) G-P(sol) polarization free energy of solvation -20.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds