Wall clock time and date at job start Mon Mar 8 2021 06:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99904 * 2 1 4 4 O 1.20818 * 119.99930 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99700 * 179.97438 * 3 2 1 6 6 N 1.46900 * 109.46937 * 187.94396 * 5 3 2 7 7 C 1.46904 * 110.99892 * 83.37597 * 6 5 3 8 8 C 1.50696 * 109.47423 * 290.03088 * 7 6 5 9 9 C 1.38234 * 120.00426 * 276.39696 * 8 7 6 10 10 C 1.38233 * 119.99925 * 179.80807 * 9 8 7 11 11 C 1.38235 * 120.00249 * 0.39585 * 10 9 8 12 12 C 1.38237 * 119.99854 * 359.85599 * 11 10 9 13 13 C 1.38228 * 119.99980 * 359.95835 * 12 11 10 14 14 C 1.46898 * 111.00049 * 207.33329 * 6 5 3 15 15 H 1.09005 * 112.84756 * 197.24512 * 14 6 5 16 16 C 1.53954 * 113.74150 * 328.44420 * 14 6 5 17 17 C 1.53785 * 87.01607 * 139.94519 * 16 14 6 18 18 H 1.09004 * 113.61311 * 89.23345 * 17 16 14 19 19 N 1.46502 * 113.61297 * 220.04912 * 17 16 14 20 20 C 1.38614 * 119.99658 * 254.13749 * 19 17 16 21 21 N 1.29683 * 124.95450 * 359.97438 * 20 19 17 22 22 C 1.32122 * 116.86870 * 180.02562 * 21 20 19 23 23 C 1.33327 * 114.57893 * 359.97438 * 22 21 20 24 24 C 1.50699 * 125.95013 * 179.73542 * 23 22 21 25 25 O 1.42898 * 109.47255 * 300.00343 * 24 23 22 26 26 Si 1.86302 * 109.46995 * 179.97438 * 24 23 22 27 27 S 1.70972 * 124.94604 * 180.02562 * 20 19 17 28 28 C 1.53774 * 113.61679 * 66.04601 * 14 6 5 29 29 H 1.09005 * 109.46806 * 300.00036 * 1 2 3 30 30 H 1.09002 * 109.46836 * 60.00081 * 1 2 3 31 31 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47459 * 67.94505 * 5 3 2 33 33 H 1.09004 * 109.46920 * 307.94151 * 5 3 2 34 34 H 1.08995 * 109.46914 * 50.03617 * 7 6 5 35 35 H 1.09008 * 109.46954 * 170.03350 * 7 6 5 36 36 H 1.07998 * 120.00078 * 359.97438 * 9 8 7 37 37 H 1.08001 * 120.00207 * 180.23151 * 10 9 8 38 38 H 1.08003 * 120.00234 * 179.83383 * 11 10 9 39 39 H 1.08000 * 120.00134 * 179.97438 * 12 11 10 40 40 H 1.08002 * 120.00202 * 179.97438 * 13 12 11 41 41 H 1.09002 * 113.61174 * 25.42534 * 16 14 6 42 42 H 1.09003 * 113.66832 * 254.47323 * 16 14 6 43 43 H 0.96997 * 119.99903 * 74.13785 * 19 17 16 44 44 H 1.07999 * 122.70983 * 179.97438 * 22 21 20 45 45 H 1.09001 * 109.46738 * 60.00229 * 24 23 22 46 46 H 0.96699 * 113.99779 * 179.97438 * 25 24 23 47 47 H 1.48500 * 109.99980 * 298.68445 * 26 24 23 48 48 H 1.48504 * 109.99564 * 60.00470 * 26 24 23 49 49 H 1.08999 * 113.61644 * 105.38233 * 28 14 6 50 50 H 1.08997 * 113.61212 * 334.48315 * 28 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9835 2.6704 0.1919 7 6 3.9906 3.0270 1.6169 8 6 2.5736 3.0921 2.1256 9 6 1.8280 4.2427 1.9493 10 6 0.5269 4.3010 2.4124 11 6 -0.0260 3.2115 3.0591 12 6 0.7213 2.0627 3.2401 13 6 2.0211 2.0031 2.7736 14 6 5.2968 2.9157 -0.4188 15 1 5.7707 3.8263 -0.0521 16 6 6.2270 1.6890 -0.4022 17 6 6.6586 2.0976 -1.8206 18 1 7.5049 2.7844 -1.8386 19 7 6.8270 0.9634 -2.7324 20 6 8.0990 0.5464 -3.0923 21 7 9.2028 1.0889 -2.6811 22 6 10.3294 0.5618 -3.1269 23 6 10.1691 -0.4733 -3.9517 24 6 11.2736 -1.2586 -4.6108 25 8 12.0561 -0.3860 -5.4284 26 14 10.5344 -2.6035 -5.6671 27 16 8.4412 -0.7573 -4.1442 28 6 5.2952 2.7966 -1.9519 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.9498 0.9084 -0.9516 33 1 3.9619 0.6630 0.8114 34 1 4.5436 2.2733 2.1773 35 1 4.4679 3.9985 1.7459 36 1 2.2612 5.0953 1.4473 37 1 -0.0569 5.1986 2.2713 38 1 -1.0417 3.2579 3.4233 39 1 0.2895 1.2116 3.7457 40 1 2.6051 1.1057 2.9153 41 1 5.6952 0.7383 -0.3645 42 1 7.0276 1.7569 0.3344 43 1 6.0484 0.5042 -3.0841 44 1 11.3015 0.9391 -2.8457 45 1 11.9082 -1.7056 -3.8455 46 1 12.7874 -0.8248 -5.8842 47 1 9.7446 -3.5357 -4.8231 48 1 9.6667 -2.0074 -6.7145 49 1 5.3445 3.7572 -2.4646 50 1 4.5082 2.1492 -2.3387 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14927548_15704118.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:33:08 Heat of formation + Delta-G solvation = 26.715669 kcal Electronic energy + Delta-G solvation = -34044.933446 eV Core-core repulsion = 29554.000307 eV Total energy + Delta-G solvation = -4490.933139 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.145 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.94686 -40.95624 -40.35296 -39.81517 -37.93098 -37.43818 -36.70158 -34.80277 -32.34199 -31.66138 -31.32892 -30.08537 -27.94027 -27.10918 -26.98173 -26.16078 -24.80086 -23.44593 -23.34263 -22.45484 -21.71464 -20.68340 -20.43402 -19.40152 -18.68523 -18.47061 -17.94077 -17.65505 -17.54224 -17.42037 -17.00222 -16.61097 -16.10785 -16.06238 -15.86515 -15.71267 -15.57545 -15.29966 -14.96999 -14.81695 -14.42636 -14.26201 -14.17974 -14.15147 -14.07836 -13.78708 -13.63836 -13.43708 -13.32188 -12.93638 -12.84853 -12.69920 -12.48343 -12.32441 -12.15178 -12.11449 -12.04309 -11.78941 -11.68865 -11.56149 -11.18854 -11.13176 -10.64057 -10.32777 -10.14773 -9.65162 -9.55650 -9.40626 -8.75380 -5.22572 -0.05915 0.08670 0.53862 0.64978 0.67930 1.21956 1.45392 1.56689 1.65888 1.91891 2.01887 2.08303 2.68419 3.13036 3.33792 3.39928 3.43184 3.55304 3.66305 3.71492 3.75739 3.90514 3.94376 3.97741 4.03269 4.09173 4.21775 4.24870 4.30743 4.32776 4.39015 4.39814 4.41917 4.44610 4.50162 4.57086 4.66055 4.72036 4.74401 4.76755 4.83315 4.86536 4.90792 5.18850 5.21971 5.26968 5.51467 5.62665 5.69395 5.77803 5.80518 5.81320 5.87016 5.99981 6.26114 6.57597 6.97750 7.01560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.368 6.368 3 C 0.450 3.550 4 O -0.464 6.464 5 C 0.061 3.939 6 N -0.504 5.504 7 C 0.093 3.907 8 C -0.071 4.071 9 C -0.074 4.074 10 C -0.114 4.114 11 C -0.118 4.118 12 C -0.121 4.121 13 C -0.126 4.126 14 C 0.073 3.927 15 H 0.118 0.882 16 C -0.194 4.194 17 C 0.143 3.857 18 H 0.121 0.879 19 N -0.682 5.682 20 C 0.331 3.669 21 N -0.546 5.546 22 C 0.124 3.876 23 C -0.261 4.261 24 C -0.017 4.017 25 O -0.545 6.545 26 Si 0.667 3.333 27 S 0.068 5.932 28 C -0.139 4.139 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.413 0.587 44 H 0.179 0.821 45 H 0.082 0.918 46 H 0.383 0.617 47 H -0.242 1.242 48 H -0.239 1.239 49 H 0.086 0.914 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -3.830 -0.240 4.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.285 6.285 3 C 0.290 3.710 4 O -0.347 6.347 5 C -0.068 4.068 6 N -0.227 5.227 7 C -0.033 4.033 8 C -0.072 4.072 9 C -0.093 4.093 10 C -0.132 4.132 11 C -0.136 4.136 12 C -0.139 4.139 13 C -0.145 4.145 14 C -0.036 4.036 15 H 0.136 0.864 16 C -0.235 4.235 17 C 0.035 3.965 18 H 0.139 0.861 19 N -0.320 5.320 20 C -0.040 4.040 21 N -0.271 5.271 22 C -0.027 4.027 23 C -0.383 4.383 24 C -0.131 4.131 25 O -0.352 6.352 26 Si 0.567 3.433 27 S 0.316 5.684 28 C -0.178 4.178 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.251 0.749 44 H 0.195 0.805 45 H 0.100 0.900 46 H 0.231 0.769 47 H -0.166 1.166 48 H -0.163 1.163 49 H 0.105 0.895 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.113 -3.270 -0.626 3.332 hybrid contribution 0.729 -0.066 0.882 1.146 sum 0.616 -3.337 0.256 3.403 Atomic orbital electron populations 1.23214 0.76143 1.03462 1.02572 1.86452 1.23504 1.33736 1.84776 1.23422 0.91751 0.81731 0.74116 1.90729 1.66285 1.35680 1.41982 1.21621 0.89263 0.91351 1.04537 1.61426 1.26984 1.19476 1.14815 1.21188 0.93695 1.02001 0.86428 1.19534 0.95339 0.94294 0.97995 1.20818 0.93914 0.97355 0.97217 1.21101 0.95442 0.98454 0.98191 1.21095 0.99602 0.93606 0.99299 1.20995 0.94444 0.98049 1.00385 1.20971 0.95801 0.97755 0.99934 1.23102 0.86858 0.98630 0.94990 0.86440 1.24432 1.00745 0.99667 0.98671 1.22434 0.98539 0.87604 0.87898 0.86112 1.44067 1.01680 1.35112 1.51156 1.23831 0.90558 0.94134 0.95428 1.66449 0.96492 1.33023 1.31138 1.21341 0.96573 0.91582 0.93213 1.24283 0.94525 1.08032 1.11490 1.23671 0.93413 0.98072 0.97897 1.86513 1.46639 1.37724 1.64308 0.95150 0.85618 0.80013 0.82536 1.84118 1.03012 1.33315 1.47927 1.23564 0.96058 1.02031 0.96111 0.91864 0.92059 0.88311 0.87022 0.90248 0.93301 0.89057 0.86380 0.86397 0.86510 0.86616 0.87117 0.89068 0.90211 0.74913 0.80456 0.90047 0.76885 1.16624 1.16260 0.89533 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.01 10.56 101.05 1.07 1.07 16 2 O -0.37 -0.60 10.57 -39.27 -0.41 -1.01 16 3 C 0.45 0.86 5.79 36.01 0.21 1.07 16 4 O -0.46 -2.06 12.93 -18.74 -0.24 -2.30 16 5 C 0.06 -0.05 3.85 -4.97 -0.02 -0.07 16 6 N -0.50 0.32 4.17 -228.44 -0.95 -0.63 16 7 C 0.09 -0.04 5.07 -4.98 -0.03 -0.07 16 8 C -0.07 -0.12 3.16 -104.62 -0.33 -0.45 16 9 C -0.07 -0.18 8.81 -39.58 -0.35 -0.53 16 10 C -0.11 -0.28 10.05 -39.58 -0.40 -0.68 16 11 C -0.12 -0.25 10.05 -39.58 -0.40 -0.65 16 12 C -0.12 -0.23 10.05 -39.59 -0.40 -0.63 16 13 C -0.13 -0.22 7.34 -39.58 -0.29 -0.51 16 14 C 0.07 -0.16 3.89 -66.81 -0.26 -0.42 16 15 H 0.12 -0.33 7.84 -51.93 -0.41 -0.74 16 16 C -0.19 0.42 7.05 -25.83 -0.18 0.24 16 17 C 0.14 -0.19 4.33 -67.12 -0.29 -0.48 16 18 H 0.12 0.01 7.70 -51.93 -0.40 -0.39 16 19 N -0.68 0.30 5.52 -54.99 -0.30 0.00 16 20 C 0.33 0.76 8.09 -87.68 -0.71 0.05 16 21 N -0.55 -2.03 9.85 -15.21 -0.15 -2.18 16 22 C 0.12 0.38 11.22 -19.14 -0.21 0.17 16 23 C -0.26 -0.69 5.78 -36.02 -0.21 -0.90 16 24 C -0.02 0.00 2.98 36.01 0.11 0.11 16 25 O -0.55 -0.07 12.85 -35.23 -0.45 -0.53 16 26 Si 0.67 -0.50 31.06 -169.99 -5.28 -5.78 16 27 S 0.07 0.16 20.57 -107.50 -2.21 -2.05 16 28 C -0.14 0.30 7.26 -25.93 -0.19 0.11 16 29 H 0.06 0.04 8.13 -51.93 -0.42 -0.38 16 30 H 0.06 0.03 8.13 -51.93 -0.42 -0.40 16 31 H 0.10 -0.21 8.14 -51.93 -0.42 -0.63 16 32 H 0.11 -0.25 5.31 -51.93 -0.28 -0.53 16 33 H 0.08 -0.14 7.42 -51.93 -0.39 -0.52 16 34 H 0.05 -0.06 7.70 -51.93 -0.40 -0.46 16 35 H 0.09 -0.12 7.81 -51.92 -0.41 -0.52 16 36 H 0.12 0.19 8.06 -52.49 -0.42 -0.23 16 37 H 0.12 0.13 8.06 -52.49 -0.42 -0.30 16 38 H 0.12 0.07 8.06 -52.48 -0.42 -0.36 16 39 H 0.12 0.05 8.06 -52.49 -0.42 -0.38 16 40 H 0.11 0.07 8.06 -52.49 -0.42 -0.36 16 41 H 0.09 -0.21 5.69 -51.93 -0.30 -0.51 16 42 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 43 H 0.41 -0.96 8.84 -40.82 -0.36 -1.32 16 44 H 0.18 0.25 8.06 -52.49 -0.42 -0.17 16 45 H 0.08 -0.16 7.96 -51.93 -0.41 -0.57 16 46 H 0.38 -1.93 8.74 45.56 0.40 -1.53 16 47 H -0.24 -0.37 7.11 56.52 0.40 0.03 16 48 H -0.24 -0.60 7.11 56.52 0.40 -0.20 16 49 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 50 H 0.09 -0.19 6.80 -51.93 -0.35 -0.54 16 LS Contribution 417.89 15.07 6.30 6.30 Total: 0.00 -9.15 417.89 -13.73 -22.89 By element: Atomic # 1 Polarization: -4.98 SS G_CDS: -7.15 Total: -12.12 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.88 Total: -2.58 kcal Atomic # 7 Polarization: -1.40 SS G_CDS: -1.41 Total: -2.81 kcal Atomic # 8 Polarization: -2.73 SS G_CDS: -1.11 Total: -3.84 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: -5.28 Total: -5.78 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.21 Total: -2.05 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -9.15 -13.73 -22.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14927548_15704118.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.602 kcal (2) G-P(sol) polarization free energy of solvation -9.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds