Wall clock time and date at job start Mon Mar 8 2021 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99904 * 2 1 4 4 O 1.20818 * 119.99930 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99700 * 179.97438 * 3 2 1 6 6 N 1.46900 * 109.46937 * 187.94396 * 5 3 2 7 7 C 1.46904 * 110.99892 * 83.37597 * 6 5 3 8 8 C 1.50696 * 109.47423 * 290.03088 * 7 6 5 9 9 C 1.38234 * 120.00426 * 276.39696 * 8 7 6 10 10 C 1.38233 * 119.99925 * 179.80807 * 9 8 7 11 11 C 1.38235 * 120.00249 * 0.39585 * 10 9 8 12 12 C 1.38237 * 119.99854 * 359.85599 * 11 10 9 13 13 C 1.38228 * 119.99980 * 359.95835 * 12 11 10 14 14 C 1.46898 * 111.00049 * 207.33329 * 6 5 3 15 15 H 1.09005 * 112.84756 * 197.24512 * 14 6 5 16 16 C 1.53954 * 113.74150 * 328.44420 * 14 6 5 17 17 C 1.53785 * 87.01607 * 139.94519 * 16 14 6 18 18 H 1.09004 * 113.61311 * 89.23345 * 17 16 14 19 19 N 1.46502 * 113.61297 * 220.04912 * 17 16 14 20 20 C 1.38614 * 119.99658 * 254.13749 * 19 17 16 21 21 N 1.29683 * 124.95450 * 359.97438 * 20 19 17 22 22 C 1.32122 * 116.86870 * 180.02562 * 21 20 19 23 23 C 1.33327 * 114.57893 * 359.97438 * 22 21 20 24 24 C 1.50699 * 125.95013 * 179.73542 * 23 22 21 25 25 O 1.42898 * 109.47255 * 300.00343 * 24 23 22 26 26 Si 1.86302 * 109.46995 * 179.97438 * 24 23 22 27 27 S 1.70972 * 124.94604 * 180.02562 * 20 19 17 28 28 C 1.53774 * 113.61679 * 66.04601 * 14 6 5 29 29 H 1.09005 * 109.46806 * 300.00036 * 1 2 3 30 30 H 1.09002 * 109.46836 * 60.00081 * 1 2 3 31 31 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47459 * 67.94505 * 5 3 2 33 33 H 1.09004 * 109.46920 * 307.94151 * 5 3 2 34 34 H 1.08995 * 109.46914 * 50.03617 * 7 6 5 35 35 H 1.09008 * 109.46954 * 170.03350 * 7 6 5 36 36 H 1.07998 * 120.00078 * 359.97438 * 9 8 7 37 37 H 1.08001 * 120.00207 * 180.23151 * 10 9 8 38 38 H 1.08003 * 120.00234 * 179.83383 * 11 10 9 39 39 H 1.08000 * 120.00134 * 179.97438 * 12 11 10 40 40 H 1.08002 * 120.00202 * 179.97438 * 13 12 11 41 41 H 1.09002 * 113.61174 * 25.42534 * 16 14 6 42 42 H 1.09003 * 113.66832 * 254.47323 * 16 14 6 43 43 H 0.96997 * 119.99903 * 74.13785 * 19 17 16 44 44 H 1.07999 * 122.70983 * 179.97438 * 22 21 20 45 45 H 1.09001 * 109.46738 * 60.00229 * 24 23 22 46 46 H 0.96699 * 113.99779 * 179.97438 * 25 24 23 47 47 H 1.48500 * 109.99980 * 298.68445 * 26 24 23 48 48 H 1.48504 * 109.99564 * 60.00470 * 26 24 23 49 49 H 1.08999 * 113.61644 * 105.38233 * 28 14 6 50 50 H 1.08997 * 113.61212 * 334.48315 * 28 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9835 2.6704 0.1919 7 6 3.9906 3.0270 1.6169 8 6 2.5736 3.0921 2.1256 9 6 1.8280 4.2427 1.9493 10 6 0.5269 4.3010 2.4124 11 6 -0.0260 3.2115 3.0591 12 6 0.7213 2.0627 3.2401 13 6 2.0211 2.0031 2.7736 14 6 5.2968 2.9157 -0.4188 15 1 5.7707 3.8263 -0.0521 16 6 6.2270 1.6890 -0.4022 17 6 6.6586 2.0976 -1.8206 18 1 7.5049 2.7844 -1.8386 19 7 6.8270 0.9634 -2.7324 20 6 8.0990 0.5464 -3.0923 21 7 9.2028 1.0889 -2.6811 22 6 10.3294 0.5618 -3.1269 23 6 10.1691 -0.4733 -3.9517 24 6 11.2736 -1.2586 -4.6108 25 8 12.0561 -0.3860 -5.4284 26 14 10.5344 -2.6035 -5.6671 27 16 8.4412 -0.7573 -4.1442 28 6 5.2952 2.7966 -1.9519 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.9498 0.9084 -0.9516 33 1 3.9619 0.6630 0.8114 34 1 4.5436 2.2733 2.1773 35 1 4.4679 3.9985 1.7459 36 1 2.2612 5.0953 1.4473 37 1 -0.0569 5.1986 2.2713 38 1 -1.0417 3.2579 3.4233 39 1 0.2895 1.2116 3.7457 40 1 2.6051 1.1057 2.9153 41 1 5.6952 0.7383 -0.3645 42 1 7.0276 1.7569 0.3344 43 1 6.0484 0.5042 -3.0841 44 1 11.3015 0.9391 -2.8457 45 1 11.9082 -1.7056 -3.8455 46 1 12.7874 -0.8248 -5.8842 47 1 9.7446 -3.5357 -4.8231 48 1 9.6667 -2.0074 -6.7145 49 1 5.3445 3.7572 -2.4646 50 1 4.5082 2.1492 -2.3387 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14927548_15704118.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:33:07 Heat of formation + Delta-G solvation = 28.646889 kcal Electronic energy + Delta-G solvation = -34044.849702 eV Core-core repulsion = 29554.000307 eV Total energy + Delta-G solvation = -4490.849395 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.145 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.94436 -41.02698 -40.41808 -39.88297 -37.90557 -37.48851 -36.75929 -34.80703 -32.38045 -31.76312 -31.38560 -30.09153 -27.93274 -27.13478 -26.84980 -26.17309 -24.85332 -23.47190 -23.43474 -22.50777 -21.74340 -20.74982 -20.40690 -19.42906 -18.73011 -18.42288 -17.96676 -17.72324 -17.61232 -17.47327 -17.00321 -16.58829 -16.14771 -16.11862 -15.94059 -15.74973 -15.57862 -15.31898 -14.98687 -14.84145 -14.47139 -14.31209 -14.26497 -14.17975 -14.09338 -13.78475 -13.54823 -13.45134 -13.30676 -12.95560 -12.89607 -12.67058 -12.56355 -12.34056 -12.15416 -12.07264 -11.98452 -11.84702 -11.70491 -11.66544 -11.30497 -11.13025 -10.76580 -10.41304 -10.21419 -9.76517 -9.57786 -9.39846 -8.82331 -5.18871 -0.18699 -0.03138 0.44187 0.51808 0.55618 1.24319 1.36299 1.57053 1.66237 1.86899 1.92761 2.07701 2.70244 3.08937 3.43308 3.51507 3.52613 3.59381 3.70886 3.80277 3.85122 3.90977 3.98130 3.98330 4.04090 4.13466 4.17185 4.26661 4.28490 4.30446 4.39317 4.48114 4.50713 4.58237 4.60999 4.62313 4.64569 4.68121 4.69699 4.78044 4.87550 4.91227 5.00516 5.14787 5.17384 5.19986 5.47373 5.55335 5.63468 5.67755 5.77445 5.84369 5.91822 6.04233 6.17181 6.85455 6.92494 6.93085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.372 6.372 3 C 0.448 3.552 4 O -0.493 6.493 5 C 0.062 3.938 6 N -0.513 5.513 7 C 0.094 3.906 8 C -0.072 4.072 9 C -0.091 4.091 10 C -0.129 4.129 11 C -0.132 4.132 12 C -0.129 4.129 13 C -0.134 4.134 14 C 0.080 3.920 15 H 0.126 0.874 16 C -0.183 4.183 17 C 0.142 3.858 18 H 0.108 0.892 19 N -0.672 5.672 20 C 0.330 3.670 21 N -0.568 5.568 22 C 0.111 3.889 23 C -0.274 4.274 24 C -0.023 4.023 25 O -0.563 6.563 26 Si 0.754 3.246 27 S 0.049 5.951 28 C -0.132 4.132 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.422 0.578 44 H 0.189 0.811 45 H 0.106 0.894 46 H 0.405 0.595 47 H -0.273 1.273 48 H -0.287 1.287 49 H 0.085 0.915 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 -4.604 -0.099 5.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.289 6.289 3 C 0.289 3.711 4 O -0.379 6.379 5 C -0.067 4.067 6 N -0.236 5.236 7 C -0.032 4.032 8 C -0.073 4.073 9 C -0.109 4.109 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.147 4.147 13 C -0.152 4.152 14 C -0.029 4.029 15 H 0.144 0.856 16 C -0.224 4.224 17 C 0.034 3.966 18 H 0.126 0.874 19 N -0.311 5.311 20 C -0.041 4.041 21 N -0.294 5.294 22 C -0.039 4.039 23 C -0.397 4.397 24 C -0.136 4.136 25 O -0.374 6.374 26 Si 0.658 3.342 27 S 0.297 5.703 28 C -0.171 4.171 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.261 0.739 44 H 0.205 0.795 45 H 0.124 0.876 46 H 0.257 0.743 47 H -0.199 1.199 48 H -0.214 1.214 49 H 0.103 0.897 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.825 -4.054 -0.484 4.166 hybrid contribution 0.379 0.179 0.799 0.903 sum 1.205 -3.875 0.315 4.070 Atomic orbital electron populations 1.23330 0.75607 1.04805 1.01889 1.86458 1.24160 1.33741 1.84563 1.23981 0.92731 0.81316 0.73032 1.90721 1.67113 1.36536 1.43494 1.21724 0.87480 0.91613 1.05850 1.61352 1.27744 1.19716 1.14799 1.21212 0.92521 1.02877 0.86626 1.19765 0.96277 0.93846 0.97411 1.20981 0.94206 0.97978 0.97746 1.21308 0.95842 0.98987 0.98536 1.21297 1.00290 0.93777 0.99639 1.21225 0.94740 0.98363 1.00413 1.21158 0.95924 0.98221 0.99934 1.23091 0.86159 0.98947 0.94680 0.85632 1.24356 1.00501 0.99909 0.97662 1.22425 0.98481 0.87255 0.88407 0.87450 1.44185 1.01136 1.35040 1.50777 1.24001 0.91122 0.93896 0.95079 1.66461 0.97033 1.33826 1.32128 1.21577 0.96947 0.91896 0.93514 1.24642 0.94986 1.08364 1.11669 1.23825 0.93406 0.97662 0.98671 1.86461 1.47641 1.38622 1.64654 0.94216 0.83607 0.77452 0.78927 1.84147 1.03804 1.33888 1.48437 1.23516 0.95418 1.01867 0.96254 0.92647 0.92656 0.85979 0.85501 0.88896 0.92208 0.88276 0.86190 0.85782 0.85505 0.85477 0.86066 0.88480 0.90554 0.73858 0.79450 0.87625 0.74341 1.19921 1.21379 0.89669 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.02 10.56 113.37 1.20 1.21 16 2 O -0.37 -1.12 10.57 -51.46 -0.54 -1.67 16 3 C 0.45 1.65 5.79 71.24 0.41 2.07 16 4 O -0.49 -4.63 12.93 21.99 0.28 -4.34 16 5 C 0.06 -0.16 3.85 85.56 0.33 0.17 16 6 N -0.51 1.04 4.17 -876.64 -3.65 -2.62 16 7 C 0.09 -0.15 5.07 85.56 0.43 0.29 16 8 C -0.07 -0.25 3.16 -19.87 -0.06 -0.31 16 9 C -0.09 -0.52 8.81 22.27 0.20 -0.32 16 10 C -0.13 -0.77 10.05 22.27 0.22 -0.55 16 11 C -0.13 -0.68 10.05 22.27 0.22 -0.46 16 12 C -0.13 -0.55 10.05 22.27 0.22 -0.32 16 13 C -0.13 -0.47 7.34 22.27 0.16 -0.31 16 14 C 0.08 -0.42 3.89 45.50 0.18 -0.24 16 15 H 0.13 -0.83 7.84 -2.38 -0.02 -0.85 16 16 C -0.18 0.96 7.05 31.18 0.22 1.18 16 17 C 0.14 -0.42 4.33 45.52 0.20 -0.22 16 18 H 0.11 0.04 7.70 -2.38 -0.02 0.03 16 19 N -0.67 0.65 5.52 -327.88 -1.81 -1.16 16 20 C 0.33 1.64 8.09 179.32 1.45 3.09 16 21 N -0.57 -4.51 9.85 -202.02 -1.99 -6.50 16 22 C 0.11 0.72 11.22 83.54 0.94 1.66 16 23 C -0.27 -1.52 5.78 24.57 0.14 -1.38 16 24 C -0.02 0.01 2.98 71.24 0.21 0.22 16 25 O -0.56 0.30 12.85 -148.98 -1.91 -1.62 16 26 Si 0.75 -1.13 31.06 68.60 2.13 1.00 16 27 S 0.05 0.26 20.57 -56.49 -1.16 -0.90 16 28 C -0.13 0.64 7.26 31.12 0.23 0.87 16 29 H 0.05 0.11 8.13 -2.38 -0.02 0.09 16 30 H 0.05 0.09 8.13 -2.39 -0.02 0.07 16 31 H 0.12 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.13 -0.74 5.31 -2.39 -0.01 -0.75 16 33 H 0.09 -0.47 7.42 -2.39 -0.02 -0.48 16 34 H 0.06 -0.23 7.70 -2.39 -0.02 -0.25 16 35 H 0.10 -0.33 7.81 -2.38 -0.02 -0.35 16 36 H 0.12 0.51 8.06 -2.91 -0.02 0.48 16 37 H 0.12 0.43 8.06 -2.91 -0.02 0.40 16 38 H 0.13 0.25 8.06 -2.91 -0.02 0.22 16 39 H 0.13 0.12 8.06 -2.91 -0.02 0.10 16 40 H 0.12 0.08 8.06 -2.91 -0.02 0.06 16 41 H 0.10 -0.60 5.69 -2.39 -0.01 -0.61 16 42 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.42 -2.09 8.84 -92.71 -0.82 -2.91 16 44 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 45 H 0.11 -0.57 7.96 -2.39 -0.02 -0.59 16 46 H 0.40 -4.62 8.74 -74.06 -0.65 -5.27 16 47 H -0.27 -0.94 7.11 99.48 0.71 -0.24 16 48 H -0.29 -1.83 7.11 99.48 0.71 -1.12 16 49 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 50 H 0.09 -0.47 6.80 -2.39 -0.02 -0.49 16 Total: 0.00 -22.14 417.89 -2.20 -24.34 By element: Atomic # 1 Polarization: -12.75 SS G_CDS: -0.44 Total: -13.20 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.90 Total: 6.66 kcal Atomic # 7 Polarization: -2.82 SS G_CDS: -7.45 Total: -10.27 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -2.17 Total: -7.63 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: 2.13 Total: 1.00 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -1.16 Total: -0.90 kcal Total: -22.14 -2.20 -24.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14927548_15704118.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.991 kcal (2) G-P(sol) polarization free energy of solvation -22.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds