Wall clock time and date at job start Mon Mar 8 2021 06:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34235 * 116.99873 * 2 1 4 4 O 1.20820 * 120.00231 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99527 * 179.97438 * 3 2 1 6 6 N 1.46899 * 109.46830 * 178.32824 * 5 3 2 7 7 C 1.46897 * 111.00217 * 164.31309 * 6 5 3 8 8 C 1.50704 * 109.47447 * 292.66535 * 7 6 5 9 9 C 1.38237 * 119.99828 * 89.99528 * 8 7 6 10 10 C 1.38239 * 119.99794 * 180.28300 * 9 8 7 11 11 C 1.38237 * 119.99876 * 359.48374 * 10 9 8 12 12 C 1.38229 * 119.99932 * 0.51805 * 11 10 9 13 13 C 1.38225 * 119.99854 * 270.02203 * 8 7 6 14 14 C 1.46900 * 111.00332 * 288.27156 * 6 5 3 15 15 H 1.09000 * 112.84841 * 53.98188 * 14 6 5 16 16 C 1.53778 * 113.61587 * 185.29341 * 14 6 5 17 17 C 1.53785 * 87.08061 * 139.97860 * 16 14 6 18 18 H 1.08997 * 113.69136 * 89.12414 * 17 16 14 19 19 N 1.46495 * 113.61508 * 220.01837 * 17 16 14 20 20 C 1.38614 * 120.00214 * 252.49720 * 19 17 16 21 21 N 1.29683 * 124.95267 * 179.97438 * 20 19 17 22 22 C 1.32120 * 116.86853 * 179.97438 * 21 20 19 23 23 C 1.50702 * 122.71273 * 179.97438 * 22 21 20 24 24 O 1.42899 * 109.47163 * 224.74804 * 23 22 21 25 25 Si 1.86302 * 109.46875 * 344.74286 * 23 22 21 26 26 C 1.33329 * 114.57749 * 0.02562 * 22 21 20 27 27 C 1.50699 * 125.94923 * 180.02562 * 26 22 21 28 28 S 1.70964 * 124.94463 * 359.69516 * 20 19 17 29 29 C 1.53783 * 113.60959 * 282.79321 * 14 6 5 30 30 H 1.08998 * 109.47447 * 300.01081 * 1 2 3 31 31 H 1.09003 * 109.46749 * 60.00641 * 1 2 3 32 32 H 1.08991 * 109.47164 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47387 * 58.32761 * 5 3 2 34 34 H 1.09004 * 109.46879 * 298.32418 * 5 3 2 35 35 H 1.08998 * 109.47457 * 172.66501 * 7 6 5 36 36 H 1.08998 * 109.46903 * 52.66278 * 7 6 5 37 37 H 1.07999 * 119.99881 * 0.02562 * 9 8 7 38 38 H 1.07994 * 119.99699 * 179.72598 * 10 9 8 39 39 H 1.07994 * 119.99898 * 180.23316 * 11 10 9 40 40 H 1.07998 * 120.00381 * 179.72034 * 12 11 10 41 41 H 1.07996 * 120.00513 * 359.97438 * 13 8 7 42 42 H 1.09002 * 113.61324 * 254.52433 * 16 14 6 43 43 H 1.08997 * 113.61567 * 25.43241 * 16 14 6 44 44 H 0.97000 * 120.00271 * 72.49711 * 19 17 16 45 45 H 1.08998 * 109.47353 * 104.74439 * 23 22 21 46 46 H 0.96696 * 114.00346 * 180.02562 * 24 23 22 47 47 H 1.48502 * 109.99959 * 178.68161 * 25 23 22 48 48 H 1.48499 * 110.00034 * 300.00001 * 25 23 22 49 49 H 1.08999 * 109.47559 * 84.49140 * 27 26 22 50 50 H 1.09004 * 109.46883 * 204.48757 * 27 26 22 51 51 H 1.08999 * 109.47298 * 324.48438 * 27 26 22 52 52 H 1.08995 * 113.61573 * 334.56096 * 29 14 6 53 53 H 1.09001 * 113.61414 * 105.46941 * 29 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9829 2.6829 -0.0399 7 6 5.3976 2.8243 0.3296 8 6 5.5752 2.4682 1.7831 9 6 5.8499 1.1630 2.1464 10 6 6.0070 0.8353 3.4802 11 6 5.9000 1.8147 4.4498 12 6 5.6253 3.1198 4.0865 13 6 5.4629 3.4466 2.7531 14 6 3.7224 3.2713 -1.3605 15 1 2.6874 3.1512 -1.6806 16 6 4.2533 4.7066 -1.5110 17 6 4.6834 4.3144 -2.9345 18 1 3.9120 4.4806 -3.6865 19 7 5.9857 4.8596 -3.3253 20 6 6.0563 5.8933 -4.2461 21 7 7.1541 6.4467 -4.6590 22 6 7.0355 7.4219 -5.5424 23 6 8.2232 8.1559 -6.1096 24 8 7.9582 9.5601 -6.1130 25 14 9.7248 7.8099 -5.0626 26 6 5.7800 7.7049 -5.8909 27 6 5.3520 8.7641 -6.8737 28 16 4.7093 6.6197 -5.0080 29 6 4.7493 2.8631 -2.4301 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 3.9578 0.7549 -0.8737 34 1 3.9543 0.8071 0.9055 35 1 5.7146 3.8544 0.1666 36 1 6.0020 2.1566 -0.2845 37 1 5.9377 0.3986 1.3885 38 1 6.2173 -0.1852 3.7643 39 1 6.0265 1.5594 5.4915 40 1 5.5372 3.8842 4.8443 41 1 5.2483 4.4663 2.4693 42 1 3.4719 5.4662 -1.4847 43 1 5.0892 4.9346 -0.8497 44 1 6.7987 4.4973 -2.9397 45 1 8.4058 7.8181 -7.1297 46 1 8.6815 10.0960 -6.4662 47 1 10.9098 8.5025 -5.6296 48 1 9.4885 8.2659 -3.6693 49 1 5.4003 8.3618 -7.8856 50 1 4.3298 9.0721 -6.6537 51 1 6.0161 9.6246 -6.7927 52 1 5.7207 2.5872 -2.0199 53 1 4.3683 2.1344 -3.1456 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14927548_15704122.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:33:11 Heat of formation + Delta-G solvation = 19.457318 kcal Electronic energy + Delta-G solvation = -35833.192649 eV Core-core repulsion = 31186.407146 eV Total energy + Delta-G solvation = -4646.785503 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.160 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.94214 -41.11767 -40.80460 -39.93841 -38.01156 -37.59057 -36.83771 -34.87673 -32.73545 -32.36572 -31.76594 -29.98248 -29.25868 -27.95230 -26.85770 -26.50879 -25.64191 -24.54257 -23.63335 -23.44570 -22.40926 -21.89999 -20.71063 -19.73109 -19.33676 -18.70874 -18.50499 -17.99070 -17.66859 -17.50679 -17.35119 -17.03647 -16.63462 -16.30397 -16.10066 -15.91339 -15.85540 -15.52600 -15.37362 -15.11073 -14.83977 -14.42947 -14.23754 -14.21885 -14.15982 -14.04207 -13.99498 -13.71030 -13.56480 -13.50122 -13.36563 -13.09598 -13.03330 -12.95647 -12.76674 -12.41971 -12.30741 -12.09239 -11.97355 -11.82486 -11.78710 -11.75857 -11.59656 -11.39075 -10.93700 -10.69971 -10.47258 -10.07491 -9.79827 -9.71350 -9.31668 -8.63093 -4.78639 -0.03501 0.13982 0.39583 0.51183 0.71861 1.19315 1.31943 1.61516 1.63212 1.78913 1.89924 2.04010 2.68679 3.04748 3.16433 3.34433 3.47835 3.65570 3.75449 3.79087 3.86018 3.87532 3.95304 4.10929 4.15215 4.17148 4.24111 4.27800 4.30005 4.31271 4.34750 4.36395 4.38020 4.41499 4.53822 4.63355 4.66602 4.69996 4.72711 4.77107 4.77939 4.85938 4.88131 4.97683 5.02338 5.12353 5.16198 5.18649 5.31911 5.37367 5.55561 5.64269 5.65582 5.67720 5.87740 5.90385 6.13162 6.33692 6.61718 6.77035 6.88048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.457 3.543 4 O -0.522 6.522 5 C 0.059 3.941 6 N -0.519 5.519 7 C 0.093 3.907 8 C -0.090 4.090 9 C -0.123 4.123 10 C -0.129 4.129 11 C -0.132 4.132 12 C -0.136 4.136 13 C -0.113 4.113 14 C 0.072 3.928 15 H 0.102 0.898 16 C -0.148 4.148 17 C 0.133 3.867 18 H 0.108 0.892 19 N -0.671 5.671 20 C 0.314 3.686 21 N -0.561 5.561 22 C 0.087 3.913 23 C -0.045 4.045 24 O -0.549 6.549 25 Si 0.781 3.219 26 C -0.248 4.248 27 C -0.072 4.072 28 S 0.112 5.888 29 C -0.168 4.168 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.419 0.581 45 H 0.104 0.896 46 H 0.399 0.601 47 H -0.278 1.278 48 H -0.323 1.323 49 H 0.077 0.923 50 H 0.065 0.935 51 H 0.093 0.907 52 H 0.112 0.888 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 -6.419 -1.963 6.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.284 6.284 3 C 0.300 3.700 4 O -0.410 6.410 5 C -0.069 4.069 6 N -0.243 5.243 7 C -0.033 4.033 8 C -0.090 4.090 9 C -0.141 4.141 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.154 4.154 13 C -0.132 4.132 14 C -0.037 4.037 15 H 0.120 0.880 16 C -0.187 4.187 17 C 0.027 3.973 18 H 0.126 0.874 19 N -0.311 5.311 20 C -0.057 4.057 21 N -0.288 5.288 22 C -0.042 4.042 23 C -0.157 4.157 24 O -0.359 6.359 25 Si 0.687 3.313 26 C -0.371 4.371 27 C -0.131 4.131 28 S 0.361 5.639 29 C -0.208 4.208 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.125 0.875 34 H 0.145 0.855 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.258 0.742 45 H 0.121 0.879 46 H 0.250 0.750 47 H -0.206 1.206 48 H -0.251 1.251 49 H 0.095 0.905 50 H 0.084 0.916 51 H 0.112 0.888 52 H 0.130 0.870 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.248 -6.168 -0.578 6.200 hybrid contribution 0.858 1.309 -0.651 1.695 sum 0.610 -4.859 -1.229 5.049 Atomic orbital electron populations 1.23463 0.75058 1.05434 1.02262 1.86485 1.24678 1.33220 1.84016 1.24139 0.92855 0.81139 0.71859 1.90671 1.67660 1.37170 1.45461 1.21737 0.86913 0.91579 1.06652 1.61402 1.19846 1.14538 1.28499 1.21232 0.87087 1.03527 0.91456 1.19871 1.00025 0.93752 0.95395 1.21356 0.99894 0.95962 0.96869 1.21445 0.99788 1.00219 0.93216 1.21451 0.99703 0.93354 1.00499 1.21407 1.00099 0.97235 0.96627 1.21205 0.99150 0.99816 0.93011 1.22989 0.99128 0.95293 0.86278 0.87972 1.23800 1.01698 0.96861 0.96382 1.22481 0.83919 0.95096 0.95797 0.87390 1.44009 1.09709 1.34115 1.43296 1.23479 0.92344 0.94607 0.95313 1.65605 1.28677 1.15384 1.19160 1.19082 0.94143 0.94919 0.96052 1.24132 1.02343 0.82729 1.06455 1.86448 1.45862 1.16072 1.87531 0.93000 0.73206 0.90629 0.74433 1.25392 0.94548 1.07110 1.10059 1.20290 1.01742 0.95587 0.95457 1.83838 1.09555 1.31315 1.39218 1.24094 1.01942 0.95512 0.99257 0.92532 0.91959 0.85423 0.87517 0.85493 0.88390 0.90728 0.83868 0.84402 0.85106 0.85497 0.86027 0.91068 0.88192 0.74178 0.87870 0.74973 1.20561 1.25141 0.90475 0.91609 0.88821 0.87019 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.37 -0.65 10.57 -51.46 -0.54 -1.20 16 3 C 0.46 1.43 7.65 71.24 0.54 1.97 16 4 O -0.52 -5.07 14.76 21.98 0.32 -4.74 16 5 C 0.06 -0.20 5.37 85.56 0.46 0.26 16 6 N -0.52 1.19 4.26 -876.99 -3.73 -2.54 16 7 C 0.09 -0.47 4.10 85.56 0.35 -0.12 16 8 C -0.09 0.11 4.97 -19.87 -0.10 0.01 16 9 C -0.12 0.33 7.90 22.27 0.18 0.50 16 10 C -0.13 0.15 10.05 22.27 0.22 0.37 16 11 C -0.13 -0.10 10.05 22.27 0.22 0.13 16 12 C -0.14 -0.26 10.05 22.27 0.22 -0.04 16 13 C -0.11 -0.19 9.70 22.27 0.22 0.02 16 14 C 0.07 -0.25 3.46 45.44 0.16 -0.09 16 15 H 0.10 0.04 6.72 -2.39 -0.02 0.02 16 16 C -0.15 0.44 7.33 31.12 0.23 0.67 16 17 C 0.13 -0.61 4.23 45.52 0.19 -0.42 16 18 H 0.11 -0.42 7.05 -2.39 -0.02 -0.44 16 19 N -0.67 1.23 5.51 -327.90 -1.81 -0.57 16 20 C 0.31 1.34 8.24 179.32 1.48 2.82 16 21 N -0.56 -4.23 8.60 -189.86 -1.63 -5.87 16 22 C 0.09 0.66 6.03 41.41 0.25 0.91 16 23 C -0.04 -0.14 2.72 71.24 0.19 0.05 16 24 O -0.55 -1.57 10.22 -148.98 -1.52 -3.09 16 25 Si 0.78 3.03 31.88 68.60 2.19 5.22 16 26 C -0.25 -1.61 6.49 24.57 0.16 -1.45 16 27 C -0.07 -0.21 9.98 71.24 0.71 0.50 16 28 S 0.11 0.41 21.68 -56.49 -1.22 -0.81 16 29 C -0.17 1.35 6.74 31.12 0.21 1.56 16 30 H 0.06 0.00 8.13 -2.39 -0.02 -0.01 16 31 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 32 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 33 H 0.11 -0.92 7.67 -2.39 -0.02 -0.94 16 34 H 0.13 -0.55 5.19 -2.38 -0.01 -0.56 16 35 H 0.10 -0.50 5.46 -2.39 -0.01 -0.52 16 36 H 0.07 -0.70 6.55 -2.39 -0.02 -0.71 16 37 H 0.14 -1.12 7.69 -2.91 -0.02 -1.14 16 38 H 0.14 -0.67 8.06 -2.91 -0.02 -0.69 16 39 H 0.13 -0.28 8.06 -2.91 -0.02 -0.31 16 40 H 0.13 -0.03 8.06 -2.91 -0.02 -0.06 16 41 H 0.12 0.11 8.06 -2.91 -0.02 0.08 16 42 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.10 -0.33 5.70 -2.39 -0.01 -0.35 16 44 H 0.42 -1.79 8.85 -92.71 -0.82 -2.61 16 45 H 0.10 -0.16 7.96 -2.39 -0.02 -0.18 16 46 H 0.40 -2.31 8.74 -74.06 -0.65 -2.96 16 47 H -0.28 -1.44 7.11 99.48 0.71 -0.73 16 48 H -0.32 -4.56 7.11 99.48 0.71 -3.85 16 49 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 50 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 51 H 0.09 0.36 5.69 -2.39 -0.01 0.34 16 52 H 0.11 -1.19 5.94 -2.39 -0.01 -1.20 16 53 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 Total: 0.00 -22.06 435.71 -1.32 -23.37 By element: Atomic # 1 Polarization: -18.11 SS G_CDS: -0.46 Total: -18.57 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 7.10 Total: 8.81 kcal Atomic # 7 Polarization: -1.81 SS G_CDS: -7.17 Total: -8.99 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -1.74 Total: -9.03 kcal Atomic # 14 Polarization: 3.03 SS G_CDS: 2.19 Total: 5.22 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -1.22 Total: -0.81 kcal Total: -22.06 -1.32 -23.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14927548_15704122.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.830 kcal (2) G-P(sol) polarization free energy of solvation -22.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds