Wall clock time and date at job start Mon Mar 8 2021 06:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34236 * 117.00054 * 2 1 4 4 O 1.20826 * 119.99984 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00058 * 180.02562 * 3 2 1 6 6 N 1.46900 * 109.47267 * 174.47031 * 5 3 2 7 7 C 1.46894 * 111.00054 * 164.09468 * 6 5 3 8 8 C 1.50699 * 109.47297 * 295.25542 * 7 6 5 9 9 C 1.38235 * 120.00271 * 89.99532 * 8 7 6 10 10 C 1.38232 * 120.00091 * 179.72551 * 9 8 7 11 11 C 1.38234 * 120.00089 * 0.26051 * 10 9 8 12 12 C 1.38238 * 120.00134 * 0.02562 * 11 10 9 13 13 C 1.38235 * 119.99532 * 359.97320 * 12 11 10 14 14 C 1.46901 * 110.99551 * 288.04917 * 6 5 3 15 15 H 1.08999 * 112.85290 * 54.12535 * 14 6 5 16 16 C 1.53778 * 113.60961 * 185.32403 * 14 6 5 17 17 C 1.53959 * 87.02032 * 139.95245 * 16 14 6 18 18 H 1.08995 * 113.53889 * 89.18461 * 17 16 14 19 19 N 1.46500 * 113.73993 * 220.05698 * 17 16 14 20 20 C 1.39152 * 119.99600 * 252.59453 * 19 17 16 21 21 N 1.32334 * 119.71936 * 359.72078 * 20 19 17 22 22 C 1.32003 * 121.64649 * 179.75072 * 21 20 19 23 23 C 1.37984 * 120.90204 * 0.53647 * 22 21 20 24 24 C 1.50703 * 120.32919 * 179.71905 * 23 22 21 25 25 O 1.42898 * 109.47254 * 120.02162 * 24 23 22 26 26 Si 1.86290 * 109.47124 * 0.02562 * 24 23 22 27 27 C 1.38915 * 119.34641 * 359.73598 * 23 22 21 28 28 C 1.38444 * 118.47838 * 0.02562 * 27 23 22 29 29 F 1.35104 * 120.46491 * 179.97438 * 28 27 23 30 30 C 1.53784 * 87.10855 * 334.63170 * 17 16 14 31 31 H 1.09005 * 109.47296 * 59.99559 * 1 2 3 32 32 H 1.08995 * 109.47125 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47167 * 299.99951 * 1 2 3 34 34 H 1.08997 * 109.47216 * 54.46563 * 5 3 2 35 35 H 1.09009 * 109.46763 * 294.46924 * 5 3 2 36 36 H 1.09001 * 109.47177 * 175.25240 * 7 6 5 37 37 H 1.08997 * 109.47315 * 55.25408 * 7 6 5 38 38 H 1.07995 * 119.99721 * 0.02562 * 9 8 7 39 39 H 1.08002 * 120.00002 * 180.28241 * 10 9 8 40 40 H 1.08001 * 120.00460 * 179.97438 * 11 10 9 41 41 H 1.07998 * 120.00213 * 179.97438 * 12 11 10 42 42 H 1.08005 * 119.99922 * 179.97438 * 13 12 11 43 43 H 1.09002 * 113.61110 * 254.52692 * 16 14 6 44 44 H 1.08998 * 113.62147 * 25.42821 * 16 14 6 45 45 H 0.96994 * 120.00543 * 72.59138 * 19 17 16 46 46 H 1.08002 * 119.55356 * 180.26769 * 22 21 20 47 47 H 1.09001 * 109.46655 * 240.01824 * 24 23 22 48 48 H 0.96701 * 114.00063 * 180.02562 * 25 24 23 49 49 H 1.48504 * 110.00163 * 298.68155 * 26 24 23 50 50 H 1.48503 * 109.99965 * 60.00104 * 26 24 23 51 51 H 1.07993 * 120.75687 * 180.02562 * 27 23 22 52 52 H 1.08995 * 113.61500 * 270.81589 * 30 17 16 53 53 H 1.08998 * 113.68802 * 139.91901 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9832 2.6772 -0.1339 7 6 5.3954 2.8439 0.2342 8 6 5.5745 2.5254 1.6962 9 6 5.8636 1.2328 2.0917 10 6 6.0334 0.9419 3.4324 11 6 5.9089 1.9425 4.3780 12 6 5.6140 3.2340 3.9830 13 6 5.4442 3.5249 2.6423 14 6 3.7311 3.1743 -1.4931 15 1 2.6976 3.0345 -1.8101 16 6 4.2636 4.5960 -1.7376 17 6 4.7029 4.1057 -3.1293 18 1 3.9351 4.2219 -3.8941 19 7 6.0083 4.6198 -3.5509 20 6 6.0857 5.5916 -4.5437 21 7 4.9768 6.0435 -5.1073 22 6 5.0056 6.9682 -6.0489 23 6 6.2030 7.4929 -6.4904 24 6 6.2211 8.5436 -7.5706 25 8 6.8329 9.7332 -7.0679 26 14 4.4752 8.9196 -8.1006 27 6 7.3915 7.0429 -5.9296 28 6 7.3304 6.0761 -4.9406 29 9 8.4616 5.6094 -4.3681 30 6 4.7630 2.6922 -2.5265 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 3.9601 0.6977 -0.8371 35 1 3.9518 0.8686 0.9346 36 1 5.7008 3.8733 0.0464 37 1 6.0086 2.1685 -0.3625 38 1 5.9615 0.4512 1.3529 39 1 6.2637 -0.0672 3.7410 40 1 6.0412 1.7151 5.4255 41 1 5.5163 4.0156 4.7218 42 1 5.2134 4.5338 2.3337 43 1 3.4824 5.3556 -1.7678 44 1 5.0954 4.8686 -1.0880 45 1 6.8187 4.2828 -3.1379 46 1 4.0796 7.3157 -6.4827 47 1 6.7892 8.1762 -8.4253 48 1 6.8785 10.4539 -7.7109 49 1 3.8384 7.6979 -8.6549 50 1 3.6903 9.4215 -6.9441 51 1 8.3415 7.4382 -6.2577 52 1 5.7315 2.4432 -2.0930 53 1 4.3848 1.9160 -3.1917 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14927548_17656566.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:33:16 Heat of formation + Delta-G solvation = -28.701947 kcal Electronic energy + Delta-G solvation = -37948.004806 eV Core-core repulsion = 32896.062358 eV Total energy + Delta-G solvation = -5051.942449 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.179 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -50.05919 -42.02697 -41.51099 -40.88143 -39.94665 -38.04447 -37.60862 -36.84578 -35.06369 -33.37597 -32.60078 -31.83679 -31.39115 -29.94623 -28.00930 -27.14578 -26.77347 -26.17710 -25.29144 -23.60520 -23.45671 -22.79113 -22.43503 -21.78562 -20.33689 -19.28014 -18.89068 -18.68883 -18.40076 -18.08874 -17.91904 -17.71177 -17.44842 -17.05321 -17.02659 -16.78924 -16.46825 -16.16228 -15.92875 -15.55885 -15.50905 -15.20481 -15.08962 -14.92784 -14.83259 -14.45595 -14.42991 -14.27374 -14.17210 -14.03754 -13.98226 -13.74593 -13.64073 -13.49159 -13.24001 -12.99596 -12.81773 -12.58016 -12.34550 -12.16692 -12.09091 -11.95820 -11.83692 -11.83139 -11.68099 -11.47076 -11.31335 -10.89440 -10.83123 -10.25340 -9.83187 -9.75483 -9.36662 -8.87802 -4.93615 -0.26492 -0.01390 0.35592 0.47696 1.13931 1.30851 1.57665 1.67156 1.85267 1.98429 2.36094 2.63371 2.88977 2.99578 3.10108 3.32118 3.35245 3.44881 3.59231 3.67416 3.72229 3.73513 3.80424 3.84599 3.90599 4.04174 4.10190 4.13690 4.19447 4.24204 4.26076 4.27090 4.29537 4.31012 4.37044 4.47621 4.51793 4.58313 4.59231 4.62827 4.65547 4.70287 4.74681 4.81647 4.87077 4.93908 5.01417 5.10712 5.13596 5.30807 5.32185 5.52300 5.61432 5.62852 5.81187 5.82865 5.85811 6.07597 6.09568 6.72090 6.81313 6.93946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.457 3.543 4 O -0.522 6.522 5 C 0.059 3.941 6 N -0.518 5.518 7 C 0.093 3.907 8 C -0.092 4.092 9 C -0.123 4.123 10 C -0.128 4.128 11 C -0.130 4.130 12 C -0.134 4.134 13 C -0.113 4.113 14 C 0.075 3.925 15 H 0.096 0.904 16 C -0.144 4.144 17 C 0.142 3.858 18 H 0.105 0.895 19 N -0.697 5.697 20 C 0.380 3.620 21 N -0.530 5.530 22 C 0.126 3.874 23 C -0.170 4.170 24 C -0.063 4.063 25 O -0.565 6.565 26 Si 0.771 3.229 27 C -0.037 4.037 28 C -0.028 4.028 29 F -0.133 7.133 30 C -0.173 4.173 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.061 0.939 44 H 0.097 0.903 45 H 0.419 0.581 46 H 0.155 0.845 47 H 0.102 0.898 48 H 0.405 0.595 49 H -0.283 1.283 50 H -0.296 1.296 51 H 0.166 0.834 52 H 0.109 0.891 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.790 -1.746 -4.151 5.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.283 6.283 3 C 0.300 3.700 4 O -0.410 6.410 5 C -0.069 4.069 6 N -0.242 5.242 7 C -0.032 4.032 8 C -0.092 4.092 9 C -0.142 4.142 10 C -0.146 4.146 11 C -0.148 4.148 12 C -0.152 4.152 13 C -0.131 4.131 14 C -0.034 4.034 15 H 0.114 0.886 16 C -0.183 4.183 17 C 0.036 3.964 18 H 0.123 0.877 19 N -0.330 5.330 20 C 0.141 3.859 21 N -0.247 5.247 22 C -0.031 4.031 23 C -0.175 4.175 24 C -0.174 4.174 25 O -0.375 6.375 26 Si 0.677 3.323 27 C -0.063 4.063 28 C -0.054 4.054 29 F -0.112 7.112 30 C -0.212 4.212 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.147 0.853 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.258 0.742 46 H 0.172 0.828 47 H 0.120 0.880 48 H 0.257 0.743 49 H -0.210 1.210 50 H -0.224 1.224 51 H 0.184 0.816 52 H 0.127 0.873 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.537 -2.151 -2.840 3.603 hybrid contribution 1.436 -0.370 0.077 1.485 sum 1.973 -2.521 -2.764 4.229 Atomic orbital electron populations 1.23477 0.75007 1.05511 1.02252 1.86484 1.24730 1.33111 1.84015 1.24131 0.92837 0.81167 0.71892 1.90678 1.67646 1.37248 1.45425 1.21745 0.86978 0.91553 1.06647 1.61442 1.20152 1.17246 1.25346 1.21220 0.87066 1.03391 0.91539 1.19853 1.00280 0.93891 0.95222 1.21342 0.99955 0.96092 0.96769 1.21446 0.99706 1.00192 0.93216 1.21470 0.99482 0.93236 1.00628 1.21414 0.99942 0.97514 0.96329 1.21203 0.99096 0.99668 0.93182 1.22920 0.98776 0.95928 0.85796 0.88564 1.23734 1.01245 0.96510 0.96827 1.22247 0.85097 0.93915 0.95165 0.87670 1.44538 1.09613 1.40385 1.38475 1.18587 0.87742 0.89921 0.89634 1.67230 1.28521 1.15893 1.13074 1.22320 0.97417 0.91694 0.91625 1.20272 0.92682 1.01927 1.02663 1.24584 1.11219 0.85787 0.95812 1.86437 1.82963 1.23832 1.44300 0.94201 0.72389 0.83403 0.82329 1.21492 1.00824 0.91914 0.92045 1.18091 0.81729 1.03541 1.02077 1.91483 1.48445 1.87700 1.83615 1.24095 1.01651 0.96577 0.98925 0.92124 0.85249 0.92418 0.87850 0.85255 0.88602 0.90995 0.83998 0.84275 0.84888 0.85308 0.86093 0.91985 0.88477 0.74234 0.82816 0.88029 0.74289 1.21003 1.22393 0.81600 0.87318 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.56 113.37 1.20 1.20 16 2 O -0.37 -1.38 10.57 -51.47 -0.54 -1.93 16 3 C 0.46 2.59 7.57 71.23 0.54 3.13 16 4 O -0.52 -6.58 14.98 21.96 0.33 -6.25 16 5 C 0.06 -0.04 5.36 85.56 0.46 0.42 16 6 N -0.52 -0.41 4.25 -876.99 -3.73 -4.14 16 7 C 0.09 -0.23 4.18 85.56 0.36 0.13 16 8 C -0.09 -0.04 4.90 -19.87 -0.10 -0.14 16 9 C -0.12 0.17 7.80 22.27 0.17 0.35 16 10 C -0.13 0.05 10.05 22.27 0.22 0.27 16 11 C -0.13 -0.16 10.05 22.27 0.22 0.06 16 12 C -0.13 -0.35 10.05 22.27 0.22 -0.12 16 13 C -0.11 -0.34 9.70 22.27 0.22 -0.12 16 14 C 0.07 0.05 3.47 45.44 0.16 0.21 16 15 H 0.10 0.47 6.87 -2.39 -0.02 0.46 16 16 C -0.14 -0.25 7.35 31.18 0.23 -0.02 16 17 C 0.14 0.13 4.27 45.58 0.19 0.33 16 18 H 0.11 0.46 7.40 -2.39 -0.02 0.45 16 19 N -0.70 -1.30 5.51 -321.50 -1.77 -3.07 16 20 C 0.38 2.53 7.49 133.08 1.00 3.52 16 21 N -0.53 -4.74 9.13 -193.03 -1.76 -6.50 16 22 C 0.13 0.88 9.84 84.61 0.83 1.72 16 23 C -0.17 -0.71 5.43 -19.76 -0.11 -0.82 16 24 C -0.06 0.15 2.83 71.24 0.20 0.35 16 25 O -0.57 1.16 12.75 -148.98 -1.90 -0.74 16 26 Si 0.77 -2.61 29.82 68.60 2.05 -0.56 16 27 C -0.04 -0.15 9.75 22.48 0.22 0.07 16 28 C -0.03 -0.17 7.35 22.58 0.17 0.00 16 29 F -0.13 -0.74 16.65 44.97 0.75 0.01 16 30 C -0.17 0.60 6.73 31.12 0.21 0.81 16 31 H 0.06 0.05 8.13 -2.38 -0.02 0.03 16 32 H 0.13 -0.74 8.14 -2.39 -0.02 -0.75 16 33 H 0.06 0.09 8.13 -2.38 -0.02 0.07 16 34 H 0.10 -0.57 7.66 -2.39 -0.02 -0.59 16 35 H 0.13 -0.25 5.09 -2.38 -0.01 -0.27 16 36 H 0.10 -0.22 5.56 -2.39 -0.01 -0.23 16 37 H 0.07 -0.47 6.41 -2.39 -0.02 -0.48 16 38 H 0.14 -0.89 7.77 -2.91 -0.02 -0.91 16 39 H 0.14 -0.59 8.06 -2.91 -0.02 -0.61 16 40 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 41 H 0.13 0.02 8.06 -2.91 -0.02 0.00 16 42 H 0.12 0.28 8.06 -2.91 -0.02 0.26 16 43 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.10 0.05 5.72 -2.39 -0.01 0.04 16 45 H 0.42 -0.62 8.20 -92.71 -0.76 -1.38 16 46 H 0.16 0.83 4.88 -2.91 -0.01 0.82 16 47 H 0.10 -0.72 7.96 -2.39 -0.02 -0.74 16 48 H 0.41 -5.11 8.74 -74.06 -0.65 -5.76 16 49 H -0.28 -0.49 7.11 99.48 0.71 0.22 16 50 H -0.30 -1.40 7.11 99.48 0.71 -0.69 16 51 H 0.17 0.08 8.06 -2.91 -0.02 0.05 16 52 H 0.11 -0.72 5.88 -2.39 -0.01 -0.73 16 53 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 Total: 0.00 -22.56 431.70 -0.35 -22.91 By element: Atomic # 1 Polarization: -10.70 SS G_CDS: -0.38 Total: -11.08 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 6.61 Total: 11.35 kcal Atomic # 7 Polarization: -6.44 SS G_CDS: -7.26 Total: -13.70 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -2.11 Total: -8.92 kcal Atomic # 9 Polarization: -0.74 SS G_CDS: 0.75 Total: 0.01 kcal Atomic # 14 Polarization: -2.61 SS G_CDS: 2.05 Total: -0.56 kcal Total: -22.56 -0.35 -22.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14927548_17656566.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.792 kcal (2) G-P(sol) polarization free energy of solvation -22.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds