Wall clock time and date at job start Mon Mar 8 2021 06:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86297 * 109.46812 * 2 1 4 4 C 1.50703 * 109.47016 * 239.99844 * 2 1 3 5 5 C 1.38838 * 120.33874 * 300.01992 * 4 2 1 6 6 C 1.38336 * 118.50481 * 179.72960 * 5 4 2 7 7 C 1.39101 * 119.09927 * 0.51251 * 6 5 4 8 8 N 1.39000 * 119.70464 * 179.75223 * 7 6 5 9 9 C 1.46500 * 120.00374 * 359.72557 * 8 7 6 10 10 H 1.08999 * 112.84772 * 336.20077 * 9 8 7 11 11 C 1.53781 * 113.69176 * 107.46451 * 9 8 7 12 12 C 1.54049 * 87.08031 * 139.99046 * 11 9 8 13 13 H 1.09000 * 113.61076 * 89.06984 * 12 11 9 14 14 C 1.52990 * 113.70090 * 220.05426 * 12 11 9 15 15 N 1.46497 * 109.47171 * 272.42414 * 14 12 11 16 16 C 1.35315 * 125.87107 * 124.71147 * 15 14 12 17 17 C 1.35355 * 106.17686 * 179.90568 * 16 15 14 18 18 N 1.33767 * 106.49452 * 0.35198 * 17 16 15 19 19 N 1.28631 * 108.88739 * 359.77311 * 18 17 16 20 20 C 1.53781 * 113.61760 * 205.00147 * 9 8 7 21 21 N 1.32428 * 120.58596 * 359.47529 * 7 6 5 22 22 C 1.31942 * 121.62517 * 0.25644 * 21 7 6 23 23 H 0.96702 * 114.00166 * 60.00238 * 1 2 3 24 24 H 1.08993 * 109.47170 * 120.00092 * 2 1 3 25 25 H 1.48501 * 110.00243 * 60.00114 * 3 2 1 26 26 H 1.48499 * 110.00082 * 181.32042 * 3 2 1 27 27 H 1.07997 * 120.74607 * 359.95929 * 5 4 2 28 28 H 1.08003 * 120.45255 * 180.26850 * 6 5 4 29 29 H 0.97000 * 120.00245 * 179.73226 * 8 7 6 30 30 H 1.09005 * 113.61471 * 254.54629 * 11 9 8 31 31 H 1.08996 * 113.61178 * 25.35971 * 11 9 8 32 32 H 1.09007 * 109.47036 * 32.41747 * 14 12 11 33 33 H 1.08994 * 109.47734 * 152.42153 * 14 12 11 34 34 H 1.08004 * 126.91148 * 0.02562 * 16 15 14 35 35 H 1.08002 * 126.75030 * 180.12478 * 17 16 15 36 36 H 1.09002 * 113.61445 * 334.48426 * 20 9 8 37 37 H 1.09002 * 113.61408 * 105.30156 * 20 9 8 38 38 H 1.08000 * 119.56853 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.5999 -2.0395 -1.4573 6 6 2.0769 -2.6528 -2.6019 7 6 2.8769 -1.9245 -3.4763 8 7 3.3673 -2.5298 -4.6275 9 6 3.0461 -3.9305 -4.9124 10 1 2.7935 -4.4974 -4.0164 11 6 2.0394 -4.1123 -6.0606 12 6 2.8934 -5.3115 -6.5142 13 1 2.5992 -6.2554 -6.0553 14 6 3.0550 -5.4122 -8.0322 15 7 1.9391 -6.1784 -8.5924 16 6 1.1011 -5.7600 -9.5691 17 6 0.2290 -6.7739 -9.7777 18 7 0.5667 -7.7470 -8.9242 19 7 1.5836 -7.3632 -8.2363 20 6 4.0792 -4.6287 -5.8124 21 7 3.1709 -0.6581 -3.2245 22 6 2.7255 -0.0461 -2.1438 23 1 -0.3933 0.4417 -0.7651 24 1 1.7923 -0.5138 0.8899 25 1 1.5614 2.4679 1.2085 26 1 3.5345 1.7704 -0.0322 27 1 0.9805 -2.5812 -0.7579 28 1 1.8348 -3.6842 -2.8117 29 1 3.9224 -2.0249 -5.2422 30 1 1.0400 -4.3897 -5.7253 31 1 2.0333 -3.2855 -6.7708 32 1 3.0615 -4.4114 -8.4641 33 1 3.9938 -5.9146 -8.2652 34 1 1.1248 -4.8091 -10.0807 35 1 -0.5824 -6.7920 -10.4902 36 1 4.6317 -3.9438 -6.4556 37 1 4.7275 -5.3220 -5.2765 38 1 2.9854 0.9879 -1.9715 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14927564_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:38:43 Heat of formation + Delta-G solvation = 147.228952 kcal Electronic energy + Delta-G solvation = -21692.535916 eV Core-core repulsion = 18347.254079 eV Total energy + Delta-G solvation = -3345.281837 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.17808 -41.60553 -40.52516 -37.96040 -36.24469 -34.85057 -33.39781 -31.96926 -31.43487 -29.54145 -27.08901 -26.54715 -25.04046 -24.42313 -23.61843 -22.78694 -21.98355 -20.90695 -18.92315 -18.74970 -18.44314 -17.75487 -17.24761 -16.76909 -16.51055 -16.22939 -16.00297 -15.79266 -15.59241 -15.35747 -15.03720 -14.70933 -14.32740 -14.07493 -13.91734 -13.80952 -13.39781 -13.35916 -12.70943 -12.49443 -12.41815 -12.17143 -12.01697 -11.87986 -11.81934 -11.20582 -10.98482 -10.77397 -10.43075 -10.41862 -10.33069 -8.77539 -5.05735 0.19449 0.38170 0.63817 1.28800 1.30212 1.60732 1.67780 1.95804 1.97336 2.78469 3.02017 3.09811 3.25360 3.42592 3.44147 3.50680 3.54952 3.68282 3.74515 3.75917 3.94880 3.99426 4.05824 4.11796 4.28496 4.29160 4.32433 4.35748 4.43514 4.50847 4.61773 4.68033 4.69871 4.76846 4.94451 5.00482 5.22566 5.27643 5.46338 5.57595 5.91559 6.43799 6.56818 7.09633 7.57930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.053 4.053 3 Si 0.682 3.318 4 C -0.234 4.234 5 C -0.005 4.005 6 C -0.239 4.239 7 C 0.407 3.593 8 N -0.712 5.712 9 C 0.134 3.866 10 H 0.113 0.887 11 C -0.151 4.151 12 C -0.125 4.125 13 H 0.114 0.886 14 C 0.127 3.873 15 N -0.289 5.289 16 C -0.051 4.051 17 C -0.051 4.051 18 N -0.271 5.271 19 N -0.085 5.085 20 C -0.134 4.134 21 N -0.539 5.539 22 C 0.156 3.844 23 H 0.378 0.622 24 H 0.112 0.888 25 H -0.253 1.253 26 H -0.256 1.256 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.406 0.594 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.190 0.810 35 H 0.190 0.810 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 3.694 -3.358 5.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.165 4.165 3 Si 0.585 3.415 4 C -0.239 4.239 5 C -0.031 4.031 6 C -0.263 4.263 7 C 0.171 3.829 8 N -0.343 5.343 9 C 0.028 3.972 10 H 0.131 0.869 11 C -0.190 4.190 12 C -0.144 4.144 13 H 0.132 0.868 14 C 0.005 3.995 15 N -0.083 5.083 16 C -0.202 4.202 17 C -0.208 4.208 18 N -0.137 5.137 19 N -0.065 5.065 20 C -0.173 4.173 21 N -0.256 5.256 22 C -0.002 4.002 23 H 0.226 0.774 24 H 0.129 0.871 25 H -0.178 1.178 26 H -0.181 1.181 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.243 0.757 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.207 0.793 35 H 0.207 0.793 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.640 3.061 -2.039 4.527 hybrid contribution -0.353 0.154 -0.343 0.516 sum 2.286 3.215 -2.382 4.609 Atomic orbital electron populations 1.86494 1.17313 1.81670 1.49267 1.24791 0.85036 1.09700 0.96948 0.94861 0.81053 0.78100 0.87532 1.21011 1.05796 0.96675 1.00461 1.21200 0.93802 0.93217 0.94881 1.21485 1.05508 1.01788 0.97547 1.18414 0.89200 0.88495 0.86749 1.44470 1.56023 1.11295 1.22529 1.22443 0.95995 0.81435 0.97357 0.86906 1.23743 0.99237 0.97355 0.98705 1.22784 0.98552 1.00185 0.92899 0.86788 1.22170 0.86969 0.96050 0.94263 1.47500 1.23050 1.12431 1.25317 1.23727 0.95495 1.03577 0.97384 1.23687 1.03106 0.91093 1.02944 1.75161 1.07049 1.25238 1.06257 1.78295 1.11071 0.96122 1.20985 1.23364 0.96391 0.99437 0.98090 1.67145 1.27206 1.09093 1.22136 1.22228 0.91495 0.98569 0.87910 0.77430 0.87053 1.17786 1.18094 0.84600 0.84913 0.75730 0.90590 0.89131 0.87402 0.87813 0.79313 0.79297 0.88782 0.89550 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.03 12.78 -35.23 -0.45 -0.48 16 2 C -0.05 0.02 2.84 36.01 0.10 0.12 16 3 Si 0.68 -0.82 29.82 -169.99 -5.07 -5.88 16 4 C -0.23 -0.06 5.40 -104.46 -0.56 -0.63 16 5 C -0.01 0.00 9.76 -39.32 -0.38 -0.39 16 6 C -0.24 -0.04 9.28 -39.23 -0.36 -0.40 16 7 C 0.41 0.34 7.65 -155.01 -1.19 -0.85 16 8 N -0.71 1.21 5.53 -53.15 -0.29 0.91 16 9 C 0.13 -0.46 4.02 -67.12 -0.27 -0.73 16 10 H 0.11 -0.37 6.11 -51.93 -0.32 -0.69 16 11 C -0.15 0.53 7.44 -25.78 -0.19 0.34 16 12 C -0.12 0.49 3.85 -89.67 -0.34 0.14 16 13 H 0.11 -0.25 7.91 -51.93 -0.41 -0.66 16 14 C 0.13 -0.51 6.30 -4.05 -0.03 -0.54 16 15 N -0.29 0.08 3.44 -61.27 -0.21 -0.13 16 16 C -0.05 0.06 11.57 -17.04 -0.20 -0.13 16 17 C -0.05 -0.05 12.05 -17.74 -0.21 -0.26 16 18 N -0.27 -1.25 12.41 30.24 0.38 -0.88 16 19 N -0.08 -0.30 12.76 60.35 0.77 0.47 16 20 C -0.13 0.65 7.38 -25.92 -0.19 0.46 16 21 N -0.54 -1.09 10.39 -12.44 -0.13 -1.22 16 22 C 0.16 0.11 9.84 -17.57 -0.17 -0.06 16 23 H 0.38 -1.38 8.70 45.56 0.40 -0.99 16 24 H 0.11 0.00 7.96 -51.93 -0.41 -0.41 16 25 H -0.25 -0.52 7.11 56.52 0.40 -0.12 16 26 H -0.26 -0.29 7.11 56.52 0.40 0.12 16 27 H 0.14 -0.08 8.06 -52.49 -0.42 -0.50 16 28 H 0.13 -0.20 6.04 -52.48 -0.32 -0.51 16 29 H 0.41 -0.97 8.85 -40.82 -0.36 -1.33 16 30 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 31 H 0.09 -0.35 7.91 -51.93 -0.41 -0.76 16 32 H 0.11 -0.70 7.78 -51.93 -0.40 -1.10 16 33 H 0.10 -0.49 8.14 -51.93 -0.42 -0.91 16 34 H 0.19 -0.98 8.06 -52.48 -0.42 -1.40 16 35 H 0.19 -0.37 8.06 -52.49 -0.42 -0.79 16 36 H 0.09 -0.55 8.08 -51.93 -0.42 -0.97 16 37 H 0.09 -0.40 8.14 -51.93 -0.42 -0.82 16 38 H 0.16 -0.19 4.88 -52.49 -0.26 -0.45 16 LS Contribution 321.55 15.07 4.85 4.85 Total: 0.00 -9.36 321.55 -8.81 -18.17 By element: Atomic # 1 Polarization: -8.24 SS G_CDS: -4.65 Total: -12.89 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -4.00 Total: -2.93 kcal Atomic # 7 Polarization: -1.35 SS G_CDS: 0.51 Total: -0.84 kcal Atomic # 8 Polarization: -0.03 SS G_CDS: -0.45 Total: -0.48 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: -5.07 Total: -5.88 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -9.36 -8.81 -18.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14927564_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.397 kcal (2) G-P(sol) polarization free energy of solvation -9.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds