Wall clock time and date at job start Mon Mar 8 2021 06:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86297 * 109.46812 * 2 1 4 4 C 1.50703 * 109.47016 * 239.99844 * 2 1 3 5 5 C 1.38838 * 120.33874 * 300.01992 * 4 2 1 6 6 C 1.38336 * 118.50481 * 179.72960 * 5 4 2 7 7 C 1.39101 * 119.09927 * 0.51251 * 6 5 4 8 8 N 1.39000 * 119.70464 * 179.75223 * 7 6 5 9 9 C 1.46500 * 120.00374 * 359.72557 * 8 7 6 10 10 H 1.08999 * 112.84772 * 336.20077 * 9 8 7 11 11 C 1.53781 * 113.69176 * 107.46451 * 9 8 7 12 12 C 1.54049 * 87.08031 * 139.99046 * 11 9 8 13 13 H 1.09000 * 113.61076 * 89.06984 * 12 11 9 14 14 C 1.52990 * 113.70090 * 220.05426 * 12 11 9 15 15 N 1.46497 * 109.47171 * 272.42414 * 14 12 11 16 16 C 1.35315 * 125.87107 * 124.71147 * 15 14 12 17 17 C 1.35355 * 106.17686 * 179.90568 * 16 15 14 18 18 N 1.33767 * 106.49452 * 0.35198 * 17 16 15 19 19 N 1.28631 * 108.88739 * 359.77311 * 18 17 16 20 20 C 1.53781 * 113.61760 * 205.00147 * 9 8 7 21 21 N 1.32428 * 120.58596 * 359.47529 * 7 6 5 22 22 C 1.31942 * 121.62517 * 0.25644 * 21 7 6 23 23 H 0.96702 * 114.00166 * 60.00238 * 1 2 3 24 24 H 1.08993 * 109.47170 * 120.00092 * 2 1 3 25 25 H 1.48501 * 110.00243 * 60.00114 * 3 2 1 26 26 H 1.48499 * 110.00082 * 181.32042 * 3 2 1 27 27 H 1.07997 * 120.74607 * 359.95929 * 5 4 2 28 28 H 1.08003 * 120.45255 * 180.26850 * 6 5 4 29 29 H 0.97000 * 120.00245 * 179.73226 * 8 7 6 30 30 H 1.09005 * 113.61471 * 254.54629 * 11 9 8 31 31 H 1.08996 * 113.61178 * 25.35971 * 11 9 8 32 32 H 1.09007 * 109.47036 * 32.41747 * 14 12 11 33 33 H 1.08994 * 109.47734 * 152.42153 * 14 12 11 34 34 H 1.08004 * 126.91148 * 0.02562 * 16 15 14 35 35 H 1.08002 * 126.75030 * 180.12478 * 17 16 15 36 36 H 1.09002 * 113.61445 * 334.48426 * 20 9 8 37 37 H 1.09002 * 113.61408 * 105.30156 * 20 9 8 38 38 H 1.08000 * 119.56853 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.5999 -2.0395 -1.4573 6 6 2.0769 -2.6528 -2.6019 7 6 2.8769 -1.9245 -3.4763 8 7 3.3673 -2.5298 -4.6275 9 6 3.0461 -3.9305 -4.9124 10 1 2.7935 -4.4974 -4.0164 11 6 2.0394 -4.1123 -6.0606 12 6 2.8934 -5.3115 -6.5142 13 1 2.5992 -6.2554 -6.0553 14 6 3.0550 -5.4122 -8.0322 15 7 1.9391 -6.1784 -8.5924 16 6 1.1011 -5.7600 -9.5691 17 6 0.2290 -6.7739 -9.7777 18 7 0.5667 -7.7470 -8.9242 19 7 1.5836 -7.3632 -8.2363 20 6 4.0792 -4.6287 -5.8124 21 7 3.1709 -0.6581 -3.2245 22 6 2.7255 -0.0461 -2.1438 23 1 -0.3933 0.4417 -0.7651 24 1 1.7923 -0.5138 0.8899 25 1 1.5614 2.4679 1.2085 26 1 3.5345 1.7704 -0.0322 27 1 0.9805 -2.5812 -0.7579 28 1 1.8348 -3.6842 -2.8117 29 1 3.9224 -2.0249 -5.2422 30 1 1.0400 -4.3897 -5.7253 31 1 2.0333 -3.2855 -6.7708 32 1 3.0615 -4.4114 -8.4641 33 1 3.9938 -5.9146 -8.2652 34 1 1.1248 -4.8091 -10.0807 35 1 -0.5824 -6.7920 -10.4902 36 1 4.6317 -3.9438 -6.4556 37 1 4.7275 -5.3220 -5.2765 38 1 2.9854 0.9879 -1.9715 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14927564_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:38:42 Heat of formation + Delta-G solvation = 145.988492 kcal Electronic energy + Delta-G solvation = -21692.589707 eV Core-core repulsion = 18347.254079 eV Total energy + Delta-G solvation = -3345.335627 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.16026 -41.53367 -40.32302 -37.92114 -36.13789 -34.77628 -33.39332 -31.94479 -31.37933 -29.37233 -26.78152 -26.48944 -24.98435 -24.35388 -23.57514 -22.75340 -21.88391 -20.63692 -18.82457 -18.63231 -18.38815 -17.65177 -17.19553 -16.59344 -16.44720 -16.14168 -15.92504 -15.68821 -15.49764 -15.27060 -14.92185 -14.57905 -14.33682 -14.05670 -13.72242 -13.48091 -13.30612 -13.16442 -12.66719 -12.39198 -12.29108 -12.11891 -11.95966 -11.81334 -11.64388 -11.08008 -10.91097 -10.76471 -10.44493 -10.39203 -10.31586 -8.69458 -4.99664 0.20060 0.37565 0.69675 1.33586 1.50962 1.63265 1.63675 1.96997 2.10885 2.80104 3.32709 3.39475 3.53096 3.54188 3.60187 3.68451 3.74487 3.77442 3.96252 3.97873 4.04933 4.13030 4.29109 4.34560 4.35562 4.39602 4.50829 4.58499 4.69767 4.71704 4.74057 4.83332 4.96808 4.99307 5.02706 5.20572 5.28552 5.33944 5.53529 5.72193 6.02538 6.55671 6.78603 7.12936 7.54915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.056 4.056 3 Si 0.769 3.231 4 C -0.237 4.237 5 C -0.014 4.014 6 C -0.245 4.245 7 C 0.396 3.604 8 N -0.704 5.704 9 C 0.129 3.871 10 H 0.108 0.892 11 C -0.145 4.145 12 C -0.119 4.119 13 H 0.091 0.909 14 C 0.119 3.881 15 N -0.283 5.283 16 C -0.035 4.035 17 C -0.073 4.073 18 N -0.322 5.322 19 N -0.125 5.125 20 C -0.120 4.120 21 N -0.561 5.561 22 C 0.147 3.853 23 H 0.394 0.606 24 H 0.106 0.894 25 H -0.297 1.297 26 H -0.285 1.285 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.410 0.590 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.233 0.767 35 H 0.209 0.791 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 4.837 -4.582 6.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.167 4.167 3 Si 0.676 3.324 4 C -0.242 4.242 5 C -0.040 4.040 6 C -0.269 4.269 7 C 0.160 3.840 8 N -0.335 5.335 9 C 0.023 3.977 10 H 0.126 0.874 11 C -0.184 4.184 12 C -0.139 4.139 13 H 0.110 0.890 14 C -0.001 4.001 15 N -0.077 5.077 16 C -0.186 4.186 17 C -0.231 4.231 18 N -0.187 5.187 19 N -0.104 5.104 20 C -0.159 4.159 21 N -0.279 5.279 22 C -0.010 4.010 23 H 0.244 0.756 24 H 0.123 0.877 25 H -0.225 1.225 26 H -0.212 1.212 27 H 0.159 0.841 28 H 0.162 0.838 29 H 0.248 0.752 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.160 0.840 33 H 0.131 0.869 34 H 0.250 0.750 35 H 0.226 0.774 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.188 4.169 -3.281 6.190 hybrid contribution -0.523 -0.167 0.038 0.550 sum 2.665 4.002 -3.243 5.800 Atomic orbital electron populations 1.86455 1.17442 1.82130 1.50464 1.24880 0.85048 1.10311 0.96486 0.93834 0.77881 0.75620 0.85098 1.21044 1.05879 0.96744 1.00572 1.21374 0.93965 0.93488 0.95158 1.21650 1.05442 1.02378 0.97478 1.18658 0.89383 0.88421 0.87550 1.44538 1.55519 1.11726 1.21767 1.22543 0.96940 0.80683 0.97516 0.87415 1.23701 0.98210 0.97736 0.98770 1.22618 0.98973 0.99039 0.93241 0.89031 1.22556 0.86216 0.97376 0.93932 1.47819 1.23354 1.11606 1.24959 1.24386 0.93784 1.04283 0.96194 1.24216 1.04436 0.91237 1.03162 1.75083 1.08294 1.27400 1.07897 1.78210 1.11830 0.98135 1.22269 1.23315 0.95773 0.99188 0.97579 1.67173 1.28086 1.09785 1.22840 1.22480 0.91468 0.99270 0.87804 0.75619 0.87706 1.22531 1.21210 0.84087 0.83802 0.75236 0.92358 0.88012 0.83981 0.86898 0.75050 0.77431 0.86843 0.89567 0.81471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.06 12.78 -148.98 -1.90 -1.96 16 2 C -0.06 0.03 2.84 71.24 0.20 0.23 16 3 Si 0.77 -1.62 29.82 68.60 2.05 0.42 16 4 C -0.24 -0.19 5.40 -19.76 -0.11 -0.30 16 5 C -0.01 -0.02 9.76 22.44 0.22 0.20 16 6 C -0.24 -0.16 9.28 22.50 0.21 0.05 16 7 C 0.40 0.64 7.65 133.05 1.02 1.66 16 8 N -0.70 2.82 5.53 -322.06 -1.78 1.04 16 9 C 0.13 -0.94 4.02 45.52 0.18 -0.75 16 10 H 0.11 -0.67 6.11 -2.39 -0.01 -0.69 16 11 C -0.15 1.11 7.44 31.21 0.23 1.35 16 12 C -0.12 0.99 3.85 -10.18 -0.04 0.95 16 13 H 0.09 -0.29 7.91 -2.39 -0.02 -0.31 16 14 C 0.12 -1.15 6.30 86.38 0.54 -0.60 16 15 N -0.28 0.32 3.44 -347.75 -1.20 -0.87 16 16 C -0.03 0.14 11.57 83.49 0.97 1.10 16 17 C -0.07 -0.15 12.05 83.73 1.01 0.86 16 18 N -0.32 -3.45 12.41 -58.26 -0.72 -4.17 16 19 N -0.13 -1.03 12.76 37.02 0.47 -0.56 16 20 C -0.12 1.31 7.38 31.12 0.23 1.54 16 21 N -0.56 -2.28 10.39 -193.26 -2.01 -4.28 16 22 C 0.15 0.23 9.84 84.64 0.83 1.06 16 23 H 0.39 -3.01 8.70 -74.06 -0.64 -3.65 16 24 H 0.11 0.07 7.96 -2.39 -0.02 0.05 16 25 H -0.30 -1.57 7.11 99.48 0.71 -0.86 16 26 H -0.29 -0.76 7.11 99.48 0.71 -0.05 16 27 H 0.14 -0.08 8.06 -2.91 -0.02 -0.11 16 28 H 0.14 -0.36 6.04 -2.91 -0.02 -0.38 16 29 H 0.41 -2.41 8.85 -92.71 -0.82 -3.23 16 30 H 0.06 -0.21 8.14 -2.38 -0.02 -0.23 16 31 H 0.10 -0.99 7.91 -2.39 -0.02 -1.00 16 32 H 0.14 -2.34 7.78 -2.38 -0.02 -2.36 16 33 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 34 H 0.23 -3.22 8.06 -2.91 -0.02 -3.25 16 35 H 0.21 -0.83 8.06 -2.91 -0.02 -0.85 16 36 H 0.11 -1.63 8.08 -2.39 -0.02 -1.65 16 37 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H 0.17 -0.44 4.88 -2.91 -0.01 -0.45 16 Total: 0.00 -24.33 321.55 0.08 -24.25 By element: Atomic # 1 Polarization: -20.88 SS G_CDS: -0.32 Total: -21.20 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.50 Total: 7.34 kcal Atomic # 7 Polarization: -3.61 SS G_CDS: -5.24 Total: -8.85 kcal Atomic # 8 Polarization: -0.06 SS G_CDS: -1.90 Total: -1.96 kcal Atomic # 14 Polarization: -1.62 SS G_CDS: 2.05 Total: 0.42 kcal Total: -24.33 0.08 -24.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14927564_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.234 kcal (2) G-P(sol) polarization free energy of solvation -24.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds