Wall clock time and date at job start Mon Mar 8 2021 06:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86294 * 109.46951 * 2 1 4 4 C 1.50696 * 109.47264 * 240.00025 * 2 1 3 5 5 C 1.33337 * 125.95108 * 299.99841 * 4 2 1 6 6 N 1.32118 * 114.57635 * 180.02562 * 5 4 2 7 7 C 1.29692 * 116.87188 * 0.02562 * 6 5 4 8 8 N 1.38611 * 124.95010 * 179.97438 * 7 6 5 9 9 C 1.46503 * 119.99980 * 0.02562 * 8 7 6 10 10 H 1.09002 * 112.84941 * 336.19111 * 9 8 7 11 11 C 1.53947 * 113.66594 * 107.44101 * 9 8 7 12 12 C 1.53779 * 87.02015 * 139.93164 * 11 9 8 13 13 H 1.09003 * 113.61976 * 89.22628 * 12 11 9 14 14 C 1.53003 * 113.61591 * 220.04864 * 12 11 9 15 15 N 1.46496 * 109.46942 * 274.13407 * 14 12 11 16 16 C 1.35314 * 125.86654 * 124.99884 * 15 14 12 17 17 C 1.35358 * 106.17498 * 179.97438 * 16 15 14 18 18 N 1.33767 * 106.49287 * 0.26477 * 17 16 15 19 19 N 1.28632 * 108.88855 * 359.56308 * 18 17 16 20 20 C 1.53776 * 113.61050 * 205.00188 * 9 8 7 21 21 S 1.70961 * 110.09653 * 0.24221 * 7 6 5 22 22 H 0.96707 * 113.99866 * 60.00595 * 1 2 3 23 23 H 1.09000 * 109.47123 * 120.00088 * 2 1 3 24 24 H 1.48504 * 110.00361 * 59.99943 * 3 2 1 25 25 H 1.48506 * 110.00108 * 181.32007 * 3 2 1 26 26 H 1.07997 * 122.71176 * 0.02562 * 5 4 2 27 27 H 0.96996 * 120.00001 * 180.02562 * 8 7 6 28 28 H 1.08996 * 113.61929 * 25.40918 * 11 9 8 29 29 H 1.09005 * 113.66814 * 254.45588 * 11 9 8 30 30 H 1.09006 * 109.47125 * 154.13547 * 14 12 11 31 31 H 1.09002 * 109.46900 * 34.13415 * 14 12 11 32 32 H 1.07995 * 126.91786 * 359.94571 * 16 15 14 33 33 H 1.08002 * 126.74926 * 179.97438 * 17 16 15 34 34 H 1.09003 * 113.61969 * 105.46973 * 20 9 8 35 35 H 1.09005 * 113.69279 * 334.57149 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6835 -1.9789 -1.5580 6 7 2.2386 -2.3725 -2.6905 7 6 2.9440 -1.4946 -3.3337 8 7 3.5983 -1.7264 -4.5335 9 6 3.5202 -3.0447 -5.1677 10 1 3.2992 -3.8429 -4.4590 11 6 2.6331 -3.0738 -6.4256 12 6 3.6923 -3.9950 -7.0534 13 1 3.5186 -5.0540 -6.8622 14 6 3.9689 -3.6951 -8.5280 15 7 3.0018 -4.4129 -9.3621 16 6 2.1896 -3.8574 -10.2909 17 6 1.4688 -4.8745 -10.8182 18 7 1.8659 -5.9869 -10.1903 19 7 2.7790 -5.6803 -9.3376 20 6 4.7085 -3.3543 -6.0933 21 16 2.9554 -0.0121 -2.4823 22 1 -0.3933 0.4417 -0.7652 23 1 1.7924 -0.5138 0.8900 24 1 1.5614 2.4679 1.2085 25 1 3.5346 1.7703 -0.0321 26 1 1.0780 -2.6318 -0.9470 27 1 4.1078 -1.0157 -4.9532 28 1 2.5464 -2.1069 -6.9212 29 1 1.6694 -3.5589 -6.2703 30 1 4.9784 -4.0191 -8.7815 31 1 3.8762 -2.6235 -8.7044 32 1 2.1284 -2.8127 -10.5575 33 1 0.7173 -4.8015 -11.5904 34 1 5.4179 -4.0655 -5.6702 35 1 5.1913 -2.4650 -6.4985 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14927564_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:38:45 Heat of formation + Delta-G solvation = 151.905077 kcal Electronic energy + Delta-G solvation = -20278.576041 eV Core-core repulsion = 17022.649223 eV Total energy + Delta-G solvation = -3255.926819 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.15473 -41.03466 -40.15039 -37.88868 -36.13358 -34.68724 -31.93881 -31.32976 -29.51085 -26.87494 -26.63626 -25.27281 -24.01307 -23.54462 -22.42274 -20.90450 -20.71262 -19.50045 -18.62011 -18.15418 -17.42027 -17.05201 -16.51495 -16.38771 -16.17995 -15.83383 -15.71199 -15.51131 -14.98623 -14.95384 -14.62456 -14.07970 -13.65916 -13.48327 -13.20563 -12.93145 -12.66298 -12.46541 -12.33838 -12.02686 -11.99253 -11.82642 -11.67962 -11.11616 -10.88716 -10.79900 -10.31381 -10.29099 -10.17094 -8.74720 -5.11649 -0.07891 0.01012 0.64228 0.70628 1.25926 1.52714 1.57364 1.64292 1.88108 1.95199 2.19812 3.33934 3.36975 3.47945 3.52920 3.67216 3.73796 3.75613 3.92175 4.01450 4.08132 4.31577 4.36151 4.40750 4.46691 4.59669 4.67302 4.69082 4.74349 4.83480 4.94179 4.99755 5.04447 5.27980 5.33667 5.73211 5.83743 6.18754 6.71290 7.01418 7.55584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.017 4.017 3 Si 0.734 3.266 4 C -0.309 4.309 5 C 0.102 3.898 6 N -0.584 5.584 7 C 0.314 3.686 8 N -0.670 5.670 9 C 0.137 3.863 10 H 0.091 0.909 11 C -0.142 4.142 12 C -0.119 4.119 13 H 0.084 0.916 14 C 0.120 3.880 15 N -0.283 5.283 16 C -0.033 4.033 17 C -0.074 4.074 18 N -0.323 5.323 19 N -0.128 5.128 20 C -0.116 4.116 21 S 0.123 5.877 22 H 0.395 0.605 23 H 0.116 0.884 24 H -0.273 1.273 25 H -0.266 1.266 26 H 0.173 0.827 27 H 0.428 0.572 28 H 0.110 0.890 29 H 0.045 0.955 30 H 0.115 0.885 31 H 0.148 0.852 32 H 0.236 0.764 33 H 0.209 0.791 34 H 0.083 0.917 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.428 9.480 -4.004 10.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.130 4.130 3 Si 0.638 3.362 4 C -0.432 4.432 5 C -0.049 4.049 6 N -0.310 5.310 7 C -0.057 4.057 8 N -0.310 5.310 9 C 0.029 3.971 10 H 0.109 0.891 11 C -0.181 4.181 12 C -0.139 4.139 13 H 0.102 0.898 14 C 0.000 4.000 15 N -0.078 5.078 16 C -0.185 4.185 17 C -0.232 4.232 18 N -0.188 5.188 19 N -0.107 5.107 20 C -0.155 4.155 21 S 0.373 5.627 22 H 0.245 0.755 23 H 0.133 0.867 24 H -0.199 1.199 25 H -0.192 1.192 26 H 0.190 0.810 27 H 0.269 0.731 28 H 0.128 0.872 29 H 0.064 0.936 30 H 0.133 0.867 31 H 0.166 0.834 32 H 0.252 0.748 33 H 0.226 0.774 34 H 0.102 0.898 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.807 8.703 -2.814 10.333 hybrid contribution -0.810 -0.439 0.243 0.953 sum 3.996 8.264 -2.571 9.533 Atomic orbital electron populations 1.86482 1.17020 1.82146 1.50257 1.24280 0.84895 1.09585 0.94234 0.94099 0.79122 0.75609 0.87405 1.25718 1.13037 0.99151 1.05335 1.21392 0.97779 0.93716 0.92023 1.66462 1.18282 1.35004 1.11257 1.24039 0.94846 0.93910 0.92869 1.44082 1.53694 1.14658 1.18533 1.22450 0.97633 0.84456 0.92535 0.89115 1.23644 0.97328 1.00485 0.96669 1.22547 0.98631 1.00296 0.92460 0.89793 1.22580 0.91168 0.98405 0.87813 1.47830 1.27535 1.06031 1.26366 1.24408 0.95720 1.03574 0.94786 1.24233 1.05341 0.88565 1.05057 1.75081 1.08787 1.28080 1.06866 1.78221 1.15628 0.97005 1.19860 1.23342 0.95647 1.02380 0.94124 1.83742 1.50431 1.12616 1.15920 0.75507 0.86655 1.19887 1.19175 0.80994 0.73121 0.87180 0.93564 0.86732 0.83410 0.74768 0.77424 0.89792 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.18 12.87 -148.98 -1.92 -2.10 16 2 C -0.02 0.00 2.99 71.23 0.21 0.22 16 3 Si 0.73 -1.60 31.05 68.60 2.13 0.53 16 4 C -0.31 -0.36 5.74 24.58 0.14 -0.22 16 5 C 0.10 0.47 11.22 83.54 0.94 1.41 16 6 N -0.58 -3.64 9.83 -202.02 -1.99 -5.63 16 7 C 0.31 0.26 8.09 179.32 1.45 1.71 16 8 N -0.67 3.63 5.51 -327.63 -1.81 1.82 16 9 C 0.14 -0.64 4.36 45.57 0.20 -0.45 16 10 H 0.09 0.16 7.66 -2.39 -0.02 0.14 16 11 C -0.14 0.81 7.45 31.18 0.23 1.04 16 12 C -0.12 0.83 3.82 -10.27 -0.04 0.79 16 13 H 0.08 -0.03 7.94 -2.39 -0.02 -0.05 16 14 C 0.12 -1.17 6.28 86.38 0.54 -0.63 16 15 N -0.28 0.19 3.44 -347.73 -1.20 -1.00 16 16 C -0.03 0.13 11.57 83.49 0.97 1.09 16 17 C -0.07 -0.19 12.05 83.73 1.01 0.82 16 18 N -0.32 -3.77 12.41 -58.25 -0.72 -4.49 16 19 N -0.13 -1.19 12.78 37.02 0.47 -0.72 16 20 C -0.12 1.23 7.40 31.12 0.23 1.46 16 21 S 0.12 -0.26 20.57 -56.49 -1.16 -1.42 16 22 H 0.39 -2.89 8.70 -74.05 -0.64 -3.54 16 23 H 0.12 0.05 7.96 -2.39 -0.02 0.03 16 24 H -0.27 -1.10 7.11 99.48 0.71 -0.40 16 25 H -0.27 -0.52 7.11 99.48 0.71 0.19 16 26 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 27 H 0.43 -5.02 8.85 -92.71 -0.82 -5.84 16 28 H 0.11 -1.12 7.92 -2.39 -0.02 -1.14 16 29 H 0.05 0.04 8.14 -2.38 -0.02 0.02 16 30 H 0.11 -1.31 8.14 -2.38 -0.02 -1.33 16 31 H 0.15 -2.63 7.80 -2.39 -0.02 -2.65 16 32 H 0.24 -3.39 8.06 -2.91 -0.02 -3.41 16 33 H 0.21 -0.74 8.06 -2.91 -0.02 -0.77 16 34 H 0.08 -0.77 8.14 -2.39 -0.02 -0.79 16 35 H 0.12 -2.09 8.08 -2.38 -0.02 -2.11 16 Total: 0.00 -26.17 317.16 -0.60 -26.77 By element: Atomic # 1 Polarization: -20.72 SS G_CDS: -0.29 Total: -21.02 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 5.88 Total: 7.25 kcal Atomic # 7 Polarization: -4.78 SS G_CDS: -5.24 Total: -10.02 kcal Atomic # 8 Polarization: -0.18 SS G_CDS: -1.92 Total: -2.10 kcal Atomic # 14 Polarization: -1.60 SS G_CDS: 2.13 Total: 0.53 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -1.16 Total: -1.42 kcal Total: -26.17 -0.60 -26.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14927564_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.678 kcal (2) G-P(sol) polarization free energy of solvation -26.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds