Wall clock time and date at job start Mon Mar 8 2021 06:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33326 * 125.95589 * 2 1 4 4 C 1.50703 * 122.70756 * 359.75072 * 3 2 1 5 5 O 1.42905 * 109.47062 * 44.28366 * 4 3 2 6 6 Si 1.86297 * 109.47311 * 164.28203 * 4 3 2 7 7 N 1.32126 * 114.58373 * 180.02562 * 3 2 1 8 8 C 1.29687 * 116.86211 * 0.02562 * 7 3 2 9 9 N 1.38606 * 124.94440 * 180.02562 * 8 7 3 10 10 C 1.46504 * 119.99851 * 180.02562 * 9 8 7 11 11 H 1.09003 * 112.84521 * 334.66300 * 10 9 8 12 12 C 1.53773 * 113.61666 * 105.86019 * 10 9 8 13 13 C 1.53962 * 87.01944 * 139.95254 * 12 10 9 14 14 H 1.08997 * 113.53755 * 89.18399 * 13 12 10 15 15 C 1.52997 * 113.66502 * 220.06915 * 13 12 10 16 16 N 1.46495 * 109.47034 * 272.55566 * 15 13 12 17 17 C 1.35319 * 125.86977 * 125.00332 * 16 15 13 18 18 C 1.35344 * 106.17698 * 179.97438 * 17 16 15 19 19 N 1.33771 * 106.49947 * 359.97438 * 18 17 16 20 20 N 1.28636 * 108.88284 * 359.73918 * 19 18 17 21 21 C 1.53784 * 87.10910 * 334.63447 * 13 12 10 22 22 S 1.70960 * 110.10242 * 359.97438 * 8 7 3 23 23 H 1.09003 * 109.46850 * 84.36440 * 1 2 3 24 24 H 1.08993 * 109.47372 * 204.36500 * 1 2 3 25 25 H 1.08995 * 109.46797 * 324.36893 * 1 2 3 26 26 H 1.08998 * 109.47247 * 284.28729 * 4 3 2 27 27 H 0.96701 * 113.99815 * 59.99777 * 5 4 3 28 28 H 1.48498 * 110.00182 * 180.02562 * 6 4 3 29 29 H 1.48502 * 110.00101 * 301.32394 * 6 4 3 30 30 H 0.97002 * 120.00288 * 359.97438 * 9 8 7 31 31 H 1.08997 * 113.61651 * 254.52710 * 12 10 9 32 32 H 1.09000 * 113.61689 * 25.43234 * 12 10 9 33 33 H 1.08999 * 109.47292 * 32.55827 * 15 13 12 34 34 H 1.08999 * 109.47042 * 152.55724 * 15 13 12 35 35 H 1.08005 * 126.91006 * 0.02562 * 17 16 15 36 36 H 1.08001 * 126.75424 * 180.02562 * 18 17 16 37 37 H 1.08994 * 113.61535 * 270.81269 * 21 13 12 38 38 H 1.09005 * 113.61508 * 139.90682 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7415 2.4830 -0.0055 5 8 0.6664 2.5781 0.9312 6 14 3.0887 3.6778 0.4720 7 7 3.5851 0.8187 -0.0005 8 6 3.9315 -0.4311 -0.0015 9 7 5.2384 -0.8927 -0.0017 10 6 5.5065 -2.3330 -0.0034 11 1 4.6913 -2.9157 0.4255 12 6 5.9982 -2.8665 -1.3592 13 6 6.9786 -3.7493 -0.5655 14 1 6.5660 -4.7202 -0.2913 15 6 8.3667 -3.8499 -1.2009 16 7 8.3816 -4.9483 -2.1701 17 6 8.7376 -4.8521 -3.4721 18 6 8.6064 -6.0949 -3.9918 19 7 8.1828 -6.8805 -2.9954 20 7 8.0650 -6.1722 -1.9280 21 6 6.8897 -2.7027 0.5578 22 16 2.5413 -1.4261 -0.0011 23 1 -0.3633 0.1009 -1.0227 24 1 -0.3634 -0.9361 0.4239 25 1 -0.3633 0.8352 0.5987 26 1 1.3766 2.7266 -1.0033 27 1 0.9192 2.3740 1.8420 28 1 2.5605 5.0657 0.4709 29 1 3.6166 3.3368 1.8175 30 1 5.9756 -0.2622 -0.0014 31 1 5.2437 -3.4325 -1.9054 32 1 6.4893 -2.1117 -1.9733 33 1 8.6029 -2.9145 -1.7081 34 1 9.1085 -4.0399 -0.4251 35 1 9.0620 -3.9626 -3.9918 36 1 8.8055 -6.3938 -5.0103 37 1 7.6250 -1.9031 0.4687 38 1 6.8537 -3.1367 1.5571 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14927564_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:38:48 Heat of formation + Delta-G solvation = 149.292146 kcal Electronic energy + Delta-G solvation = -22284.215116 eV Core-core repulsion = 18872.637373 eV Total energy + Delta-G solvation = -3411.577743 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.105 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.19431 -41.24213 -40.68406 -37.89213 -36.31222 -34.87093 -32.63928 -31.98003 -29.92402 -28.94939 -27.17654 -25.78306 -25.02557 -24.04226 -23.63183 -22.48083 -21.35595 -20.27468 -19.28595 -18.65923 -18.01944 -17.60806 -17.40017 -16.71235 -16.61787 -16.47170 -15.88067 -15.70243 -15.54662 -15.15123 -14.90774 -14.18669 -14.13339 -14.07130 -13.90268 -13.73240 -13.42866 -13.27957 -12.85161 -12.68478 -12.63446 -12.34479 -12.19888 -11.94064 -11.84139 -11.79980 -11.09584 -10.98384 -10.63866 -10.46756 -10.34548 -10.08376 -8.69456 -4.68414 -0.02354 0.13036 0.62082 0.73827 1.27492 1.41822 1.66465 1.78533 1.83645 1.90894 2.09866 2.93490 3.01588 3.18069 3.28872 3.32224 3.47322 3.49914 3.62732 3.70553 3.95846 4.08646 4.13253 4.23237 4.26841 4.28949 4.33840 4.35981 4.53864 4.55607 4.62829 4.72349 4.75041 4.85202 4.91379 5.09849 5.21222 5.29448 5.50918 5.55762 6.17173 6.34974 6.89370 7.56355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.231 4.231 3 C 0.063 3.937 4 C -0.043 4.043 5 O -0.526 6.526 6 Si 0.724 3.276 7 N -0.537 5.537 8 C 0.317 3.683 9 N -0.683 5.683 10 C 0.131 3.869 11 H 0.110 0.890 12 C -0.151 4.151 13 C -0.124 4.124 14 H 0.115 0.885 15 C 0.127 3.873 16 N -0.290 5.290 17 C -0.051 4.051 18 C -0.051 4.051 19 N -0.271 5.271 20 N -0.085 5.085 21 C -0.130 4.130 22 S 0.100 5.900 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.377 0.623 28 H -0.264 1.264 29 H -0.268 1.268 30 H 0.414 0.586 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.190 0.810 36 H 0.190 0.810 37 H 0.097 0.903 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.330 1.971 -1.062 4.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.353 4.353 3 C -0.067 4.067 4 C -0.155 4.155 5 O -0.331 6.331 6 Si 0.626 3.374 7 N -0.264 5.264 8 C -0.054 4.054 9 N -0.323 5.323 10 C 0.025 3.975 11 H 0.128 0.872 12 C -0.190 4.190 13 C -0.144 4.144 14 H 0.133 0.867 15 C 0.006 3.994 16 N -0.084 5.084 17 C -0.201 4.201 18 C -0.208 4.208 19 N -0.137 5.137 20 N -0.065 5.065 21 C -0.169 4.169 22 S 0.349 5.651 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.141 0.859 27 H 0.224 0.776 28 H -0.190 1.190 29 H -0.192 1.192 30 H 0.252 0.748 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.207 0.793 36 H 0.207 0.793 37 H 0.116 0.884 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.044 0.878 0.074 3.169 hybrid contribution -0.070 1.334 -0.046 1.337 sum 2.975 2.212 0.027 3.707 Atomic orbital electron populations 1.20348 0.86574 1.03573 1.03258 1.25175 1.01325 0.92727 1.16117 1.20037 0.86707 0.97215 1.02758 1.24519 0.98080 0.95678 0.97222 1.86557 1.34600 1.91323 1.20636 0.93610 0.81898 0.75472 0.86469 1.65704 1.17095 1.16498 1.27098 1.23290 0.91907 0.91454 0.98756 1.43914 1.01772 1.06428 1.80233 1.22556 0.98037 0.79637 0.97313 0.87220 1.23749 0.99235 0.98917 0.97142 1.22770 0.94019 1.00297 0.97282 0.86664 1.22159 0.99319 0.86727 0.91223 1.47490 1.42749 1.09007 1.09117 1.23727 1.08508 1.02405 0.85506 1.23689 1.05585 0.90248 1.01277 1.75168 1.15795 1.26368 0.96330 1.78300 1.18926 0.88187 1.21057 1.23342 0.96096 0.98269 0.99183 1.84029 0.96529 1.10644 1.73860 0.91108 0.91933 0.88361 0.85945 0.77564 1.19021 1.19226 0.74777 0.90287 0.88777 0.87318 0.87746 0.79283 0.79292 0.88429 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.02 9.97 36.00 0.36 0.34 16 2 C -0.23 -0.36 6.49 -36.03 -0.23 -0.59 16 3 C 0.06 0.12 6.00 -84.18 -0.50 -0.38 16 4 C -0.04 -0.04 2.74 36.01 0.10 0.06 16 5 O -0.53 -0.53 10.21 -35.23 -0.36 -0.89 16 6 Si 0.72 0.70 31.88 -169.99 -5.42 -4.72 16 7 N -0.54 -1.08 8.62 -11.36 -0.10 -1.18 16 8 C 0.32 0.21 8.24 -87.68 -0.72 -0.52 16 9 N -0.68 1.53 5.52 -54.99 -0.30 1.23 16 10 C 0.13 -0.49 4.20 -67.12 -0.28 -0.77 16 11 H 0.11 -0.34 7.11 -51.93 -0.37 -0.71 16 12 C -0.15 0.60 7.45 -25.83 -0.19 0.41 16 13 C -0.12 0.54 3.84 -89.71 -0.34 0.20 16 14 H 0.12 -0.30 7.92 -51.93 -0.41 -0.71 16 15 C 0.13 -0.58 6.29 -4.05 -0.03 -0.60 16 16 N -0.29 0.19 3.44 -61.27 -0.21 -0.02 16 17 C -0.05 0.08 11.57 -17.05 -0.20 -0.12 16 18 C -0.05 -0.04 12.05 -17.74 -0.21 -0.25 16 19 N -0.27 -1.18 12.41 30.23 0.38 -0.81 16 20 N -0.08 -0.27 12.77 60.35 0.77 0.50 16 21 C -0.13 0.71 7.39 -25.92 -0.19 0.52 16 22 S 0.10 0.05 21.71 -107.50 -2.33 -2.29 16 23 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 24 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 25 H 0.10 0.04 5.67 -51.93 -0.29 -0.26 16 26 H 0.12 0.01 7.96 -51.93 -0.41 -0.41 16 27 H 0.38 -0.49 8.70 45.56 0.40 -0.09 16 28 H -0.26 -0.89 7.11 56.52 0.40 -0.49 16 29 H -0.27 -1.02 7.11 56.52 0.40 -0.62 16 30 H 0.41 -1.41 8.84 -40.82 -0.36 -1.77 16 31 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 32 H 0.09 -0.43 7.90 -51.93 -0.41 -0.84 16 33 H 0.11 -0.77 7.78 -51.93 -0.40 -1.18 16 34 H 0.10 -0.55 8.14 -51.93 -0.42 -0.97 16 35 H 0.19 -1.04 8.06 -52.48 -0.42 -1.47 16 36 H 0.19 -0.41 8.06 -52.49 -0.42 -0.83 16 37 H 0.10 -0.67 8.07 -51.93 -0.42 -1.09 16 38 H 0.09 -0.48 8.14 -51.93 -0.42 -0.90 16 LS Contribution 333.76 15.07 5.03 5.03 Total: 0.00 -8.82 333.76 -9.84 -18.66 By element: Atomic # 1 Polarization: -8.96 SS G_CDS: -4.84 Total: -13.80 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.45 Total: -1.71 kcal Atomic # 7 Polarization: -0.81 SS G_CDS: 0.53 Total: -0.28 kcal Atomic # 8 Polarization: -0.53 SS G_CDS: -0.36 Total: -0.89 kcal Atomic # 14 Polarization: 0.70 SS G_CDS: -5.42 Total: -4.72 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.33 Total: -2.29 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -8.82 -9.84 -18.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14927564_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.953 kcal (2) G-P(sol) polarization free energy of solvation -8.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds