Wall clock time and date at job start Mon Mar 8 2021 06:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33326 * 125.95589 * 2 1 4 4 C 1.50703 * 122.70756 * 359.75072 * 3 2 1 5 5 O 1.42905 * 109.47062 * 44.28366 * 4 3 2 6 6 Si 1.86297 * 109.47311 * 164.28203 * 4 3 2 7 7 N 1.32126 * 114.58373 * 180.02562 * 3 2 1 8 8 C 1.29687 * 116.86211 * 0.02562 * 7 3 2 9 9 N 1.38606 * 124.94440 * 180.02562 * 8 7 3 10 10 C 1.46504 * 119.99851 * 180.02562 * 9 8 7 11 11 H 1.09003 * 112.84521 * 334.66300 * 10 9 8 12 12 C 1.53773 * 113.61666 * 105.86019 * 10 9 8 13 13 C 1.53962 * 87.01944 * 139.95254 * 12 10 9 14 14 H 1.08997 * 113.53755 * 89.18399 * 13 12 10 15 15 C 1.52997 * 113.66502 * 220.06915 * 13 12 10 16 16 N 1.46495 * 109.47034 * 272.55566 * 15 13 12 17 17 C 1.35319 * 125.86977 * 125.00332 * 16 15 13 18 18 C 1.35344 * 106.17698 * 179.97438 * 17 16 15 19 19 N 1.33771 * 106.49947 * 359.97438 * 18 17 16 20 20 N 1.28636 * 108.88284 * 359.73918 * 19 18 17 21 21 C 1.53784 * 87.10910 * 334.63447 * 13 12 10 22 22 S 1.70960 * 110.10242 * 359.97438 * 8 7 3 23 23 H 1.09003 * 109.46850 * 84.36440 * 1 2 3 24 24 H 1.08993 * 109.47372 * 204.36500 * 1 2 3 25 25 H 1.08995 * 109.46797 * 324.36893 * 1 2 3 26 26 H 1.08998 * 109.47247 * 284.28729 * 4 3 2 27 27 H 0.96701 * 113.99815 * 59.99777 * 5 4 3 28 28 H 1.48498 * 110.00182 * 180.02562 * 6 4 3 29 29 H 1.48502 * 110.00101 * 301.32394 * 6 4 3 30 30 H 0.97002 * 120.00288 * 359.97438 * 9 8 7 31 31 H 1.08997 * 113.61651 * 254.52710 * 12 10 9 32 32 H 1.09000 * 113.61689 * 25.43234 * 12 10 9 33 33 H 1.08999 * 109.47292 * 32.55827 * 15 13 12 34 34 H 1.08999 * 109.47042 * 152.55724 * 15 13 12 35 35 H 1.08005 * 126.91006 * 0.02562 * 17 16 15 36 36 H 1.08001 * 126.75424 * 180.02562 * 18 17 16 37 37 H 1.08994 * 113.61535 * 270.81269 * 21 13 12 38 38 H 1.09005 * 113.61508 * 139.90682 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7415 2.4830 -0.0055 5 8 0.6664 2.5781 0.9312 6 14 3.0887 3.6778 0.4720 7 7 3.5851 0.8187 -0.0005 8 6 3.9315 -0.4311 -0.0015 9 7 5.2384 -0.8927 -0.0017 10 6 5.5065 -2.3330 -0.0034 11 1 4.6913 -2.9157 0.4255 12 6 5.9982 -2.8665 -1.3592 13 6 6.9786 -3.7493 -0.5655 14 1 6.5660 -4.7202 -0.2913 15 6 8.3667 -3.8499 -1.2009 16 7 8.3816 -4.9483 -2.1701 17 6 8.7376 -4.8521 -3.4721 18 6 8.6064 -6.0949 -3.9918 19 7 8.1828 -6.8805 -2.9954 20 7 8.0650 -6.1722 -1.9280 21 6 6.8897 -2.7027 0.5578 22 16 2.5413 -1.4261 -0.0011 23 1 -0.3633 0.1009 -1.0227 24 1 -0.3634 -0.9361 0.4239 25 1 -0.3633 0.8352 0.5987 26 1 1.3766 2.7266 -1.0033 27 1 0.9192 2.3740 1.8420 28 1 2.5605 5.0657 0.4709 29 1 3.6166 3.3368 1.8175 30 1 5.9756 -0.2622 -0.0014 31 1 5.2437 -3.4325 -1.9054 32 1 6.4893 -2.1117 -1.9733 33 1 8.6029 -2.9145 -1.7081 34 1 9.1085 -4.0399 -0.4251 35 1 9.0620 -3.9626 -3.9918 36 1 8.8055 -6.3938 -5.0103 37 1 7.6250 -1.9031 0.4687 38 1 6.8537 -3.1367 1.5571 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14927564_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:38:47 Heat of formation + Delta-G solvation = 149.687181 kcal Electronic energy + Delta-G solvation = -22284.197986 eV Core-core repulsion = 18872.637373 eV Total energy + Delta-G solvation = -3411.560613 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.14785 -41.17887 -40.49658 -37.92063 -36.19769 -34.78815 -32.62517 -31.92917 -29.80121 -28.89488 -26.81962 -25.79087 -24.95605 -23.98507 -23.55111 -22.35936 -21.19712 -20.12751 -19.23619 -18.52570 -18.03653 -17.51939 -17.30378 -16.74376 -16.38557 -16.30284 -15.80792 -15.73214 -15.48504 -15.00777 -14.74906 -14.31729 -14.08220 -13.83610 -13.74249 -13.49493 -13.42024 -13.10354 -12.82793 -12.64828 -12.52877 -12.31077 -12.05615 -11.91568 -11.82447 -11.63726 -10.98720 -10.88039 -10.69495 -10.52445 -10.30414 -10.12095 -8.65716 -4.78746 -0.05699 0.12520 0.70089 0.71238 1.33727 1.51891 1.64825 1.69841 1.81983 1.91107 1.97694 3.27249 3.31071 3.35807 3.46169 3.52411 3.64711 3.70386 3.93462 4.05254 4.12824 4.27925 4.32700 4.36901 4.39888 4.49988 4.53599 4.68013 4.69644 4.75091 4.81284 4.87168 4.94699 4.99505 5.04690 5.21483 5.29005 5.30810 5.65957 5.73820 6.29697 6.42796 6.89050 7.56050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.248 4.248 3 C 0.055 3.945 4 C -0.044 4.044 5 O -0.534 6.534 6 Si 0.790 3.210 7 N -0.557 5.557 8 C 0.313 3.687 9 N -0.671 5.671 10 C 0.123 3.877 11 H 0.100 0.900 12 C -0.145 4.145 13 C -0.119 4.119 14 H 0.091 0.909 15 C 0.119 3.881 16 N -0.283 5.283 17 C -0.034 4.034 18 C -0.073 4.073 19 N -0.322 5.322 20 N -0.125 5.125 21 C -0.114 4.114 22 S 0.104 5.896 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.096 0.904 26 H 0.132 0.868 27 H 0.385 0.615 28 H -0.297 1.297 29 H -0.306 1.306 30 H 0.421 0.579 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.145 0.855 34 H 0.114 0.886 35 H 0.234 0.766 36 H 0.208 0.792 37 H 0.121 0.879 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.535 3.003 -1.582 5.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.371 4.371 3 C -0.075 4.075 4 C -0.156 4.156 5 O -0.341 6.341 6 Si 0.697 3.303 7 N -0.284 5.284 8 C -0.058 4.058 9 N -0.312 5.312 10 C 0.018 3.982 11 H 0.118 0.882 12 C -0.185 4.185 13 C -0.139 4.139 14 H 0.109 0.891 15 C -0.001 4.001 16 N -0.078 5.078 17 C -0.185 4.185 18 C -0.231 4.231 19 N -0.187 5.187 20 N -0.105 5.105 21 C -0.153 4.153 22 S 0.353 5.647 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.115 0.885 26 H 0.150 0.850 27 H 0.234 0.766 28 H -0.226 1.226 29 H -0.234 1.234 30 H 0.261 0.739 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.163 0.837 34 H 0.132 0.868 35 H 0.250 0.750 36 H 0.225 0.775 37 H 0.140 0.860 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.261 1.881 -0.432 4.677 hybrid contribution -0.404 1.037 0.142 1.122 sum 3.857 2.918 -0.291 4.845 Atomic orbital electron populations 1.20333 0.86038 1.03735 1.03337 1.25357 1.01941 0.93120 1.16660 1.20173 0.86938 0.97560 1.02871 1.24584 0.97956 0.95328 0.97729 1.86534 1.34853 1.91308 1.21364 0.92825 0.80588 0.72860 0.84048 1.65715 1.17165 1.17110 1.28432 1.23544 0.92950 0.91231 0.98106 1.44043 1.00929 1.07154 1.79028 1.22678 0.98877 0.78661 0.98008 0.88227 1.23724 0.98904 0.98978 0.96853 1.22603 0.94135 0.99377 0.97776 0.89057 1.22567 0.99143 0.86936 0.91427 1.47821 1.41181 1.08639 1.10119 1.24387 1.06256 1.02955 0.84941 1.24211 1.05990 0.91130 1.01801 1.75089 1.17653 1.28334 0.97647 1.78212 1.21076 0.89894 1.21299 1.23306 0.95129 0.98185 0.98642 1.83980 0.96451 1.10248 1.73990 0.90966 0.91474 0.88545 0.85019 0.76570 1.22601 1.23365 0.73861 0.92235 0.87263 0.83691 0.86755 0.74959 0.77513 0.86036 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.07 9.97 71.24 0.71 0.64 16 2 C -0.25 -0.85 6.49 24.57 0.16 -0.69 16 3 C 0.05 0.22 6.00 41.40 0.25 0.47 16 4 C -0.04 -0.09 2.74 71.24 0.20 0.11 16 5 O -0.53 -1.24 10.21 -148.98 -1.52 -2.76 16 6 Si 0.79 1.96 31.88 68.60 2.19 4.14 16 7 N -0.56 -2.21 8.62 -189.86 -1.64 -3.85 16 8 C 0.31 0.34 8.24 179.32 1.48 1.82 16 9 N -0.67 3.65 5.52 -327.90 -1.81 1.84 16 10 C 0.12 -1.00 4.20 45.52 0.19 -0.81 16 11 H 0.10 -0.58 7.11 -2.39 -0.02 -0.60 16 12 C -0.15 1.27 7.45 31.18 0.23 1.51 16 13 C -0.12 1.13 3.84 -10.21 -0.04 1.09 16 14 H 0.09 -0.37 7.92 -2.39 -0.02 -0.39 16 15 C 0.12 -1.31 6.29 86.38 0.54 -0.77 16 16 N -0.28 0.58 3.44 -347.75 -1.20 -0.61 16 17 C -0.03 0.16 11.57 83.49 0.97 1.13 16 18 C -0.07 -0.11 12.05 83.73 1.01 0.90 16 19 N -0.32 -3.30 12.41 -58.26 -0.72 -4.02 16 20 N -0.13 -0.95 12.77 37.02 0.47 -0.48 16 21 C -0.11 1.43 7.39 31.12 0.23 1.66 16 22 S 0.10 0.13 21.71 -56.49 -1.23 -1.09 16 23 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 24 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 25 H 0.10 0.11 5.67 -2.39 -0.01 0.10 16 26 H 0.13 -0.01 7.96 -2.39 -0.02 -0.03 16 27 H 0.39 -0.79 8.70 -74.06 -0.64 -1.43 16 28 H -0.30 -2.33 7.11 99.48 0.71 -1.62 16 29 H -0.31 -2.73 7.11 99.48 0.71 -2.03 16 30 H 0.42 -3.58 8.84 -92.71 -0.82 -4.40 16 31 H 0.06 -0.26 8.14 -2.39 -0.02 -0.27 16 32 H 0.11 -1.27 7.90 -2.39 -0.02 -1.28 16 33 H 0.15 -2.64 7.78 -2.39 -0.02 -2.66 16 34 H 0.11 -1.43 8.14 -2.39 -0.02 -1.45 16 35 H 0.23 -3.45 8.06 -2.91 -0.02 -3.47 16 36 H 0.21 -0.90 8.06 -2.91 -0.02 -0.92 16 37 H 0.12 -2.06 8.07 -2.39 -0.02 -2.08 16 38 H 0.09 -1.06 8.14 -2.38 -0.02 -1.08 16 Total: 0.00 -23.58 333.76 0.15 -23.43 By element: Atomic # 1 Polarization: -23.33 SS G_CDS: -0.32 Total: -23.65 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 5.92 Total: 7.06 kcal Atomic # 7 Polarization: -2.23 SS G_CDS: -4.89 Total: -7.12 kcal Atomic # 8 Polarization: -1.24 SS G_CDS: -1.52 Total: -2.76 kcal Atomic # 14 Polarization: 1.96 SS G_CDS: 2.19 Total: 4.14 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.23 Total: -1.09 kcal Total: -23.58 0.15 -23.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14927564_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.112 kcal (2) G-P(sol) polarization free energy of solvation -23.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds