Wall clock time and date at job start Mon Mar 8 2021 06:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86296 * 109.47169 * 2 1 4 4 C 1.50695 * 109.47371 * 239.99529 * 2 1 3 5 5 C 1.37993 * 120.32361 * 119.72311 * 4 2 1 6 6 N 1.32008 * 120.90165 * 180.27984 * 5 4 2 7 7 C 1.32336 * 121.64242 * 359.97438 * 6 5 4 8 8 N 1.39155 * 119.71541 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99662 * 0.02562 * 8 7 6 10 10 H 1.09000 * 112.85258 * 25.32702 * 9 8 7 11 11 C 1.53782 * 113.61510 * 156.52821 * 9 8 7 12 12 C 1.53773 * 87.08173 * 139.97545 * 11 9 8 13 13 H 1.09000 * 113.61500 * 89.11549 * 12 11 9 14 14 C 1.53000 * 113.61793 * 219.93413 * 12 11 9 15 15 N 1.46505 * 109.47280 * 185.00251 * 14 12 11 16 16 C 1.35309 * 125.86577 * 124.71755 * 15 14 12 17 17 C 1.35354 * 106.17283 * 179.90448 * 16 15 14 18 18 N 1.33773 * 106.49713 * 0.35103 * 17 16 15 19 19 N 1.28634 * 108.88274 * 359.77287 * 18 17 16 20 20 C 1.53778 * 113.61128 * 254.13683 * 9 8 7 21 21 C 1.39341 * 120.56971 * 359.97438 * 7 6 5 22 22 F 1.35099 * 120.47163 * 180.02562 * 21 7 6 23 23 C 1.38439 * 119.05527 * 0.02562 * 21 7 6 24 24 H 0.96700 * 113.99416 * 59.99798 * 1 2 3 25 25 H 1.09003 * 109.46575 * 120.00031 * 2 1 3 26 26 H 1.48507 * 109.99809 * 59.99998 * 3 2 1 27 27 H 1.48496 * 110.00059 * 181.31290 * 3 2 1 28 28 H 1.07997 * 119.54573 * 0.27875 * 5 4 2 29 29 H 0.96990 * 119.99670 * 180.02562 * 8 7 6 30 30 H 1.08998 * 113.61412 * 254.53091 * 11 9 8 31 31 H 1.09009 * 113.60889 * 25.43238 * 11 9 8 32 32 H 1.08996 * 109.47271 * 305.00631 * 14 12 11 33 33 H 1.09004 * 109.47169 * 65.00239 * 14 12 11 34 34 H 1.08001 * 126.91506 * 0.02562 * 16 15 14 35 35 H 1.07997 * 126.75182 * 180.12917 * 17 16 15 36 36 H 1.09010 * 113.61610 * 334.56387 * 20 9 8 37 37 H 1.08999 * 113.62038 * 105.47236 * 20 9 8 38 38 H 1.08003 * 120.75889 * 179.97438 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 2.7205 -0.0447 -2.1460 6 7 3.1622 -0.6543 -3.2303 7 6 2.8698 -1.9200 -3.4830 8 7 3.3566 -2.5229 -4.6389 9 6 4.1893 -1.7569 -5.5695 10 1 4.7132 -0.9314 -5.0876 11 6 5.0972 -2.6334 -6.4484 12 6 4.7646 -1.6787 -7.6070 13 1 5.4455 -0.8309 -7.6834 14 6 4.5490 -2.3897 -8.9445 15 7 4.3575 -1.3938 -10.0018 16 6 5.0781 -1.3009 -11.1432 17 6 4.5674 -0.2504 -11.8271 18 7 3.5775 0.2462 -11.0768 19 7 3.4786 -0.4535 -10.0019 20 6 3.4582 -1.3526 -6.8605 21 6 2.0787 -2.6542 -2.6017 22 9 1.7819 -3.9463 -2.8614 23 6 1.6013 -2.0407 -1.4562 24 1 -0.3932 0.4417 -0.7651 25 1 1.7923 -0.5139 0.8900 26 1 1.5615 2.4678 1.2086 27 1 3.5346 1.7702 -0.0320 28 1 2.9801 0.9892 -1.9730 29 1 3.1445 -3.4502 -4.8283 30 1 6.1457 -2.6112 -6.1514 31 1 4.7187 -3.6453 -6.5940 32 1 5.4208 -3.0018 -9.1754 33 1 3.6658 -3.0253 -8.8798 34 1 5.8951 -1.9381 -11.4483 35 1 4.8968 0.1170 -12.7877 36 1 2.6309 -2.0136 -7.1192 37 1 3.1856 -0.2979 -6.8960 38 1 0.9855 -2.5837 -0.7545 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14927564_17656566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:38:50 Heat of formation + Delta-G solvation = 101.305256 kcal Electronic energy + Delta-G solvation = -24131.580172 eV Core-core repulsion = 20314.852959 eV Total energy + Delta-G solvation = -3816.727214 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.123 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.97381 -44.14150 -41.50766 -40.32324 -37.96842 -36.17088 -34.84778 -33.21842 -31.91938 -31.42786 -29.37557 -26.78949 -26.54253 -25.44030 -23.99938 -23.48148 -22.94379 -22.05553 -20.87220 -19.25391 -18.78027 -18.44475 -18.25061 -17.55574 -17.24543 -17.02803 -16.43583 -16.15773 -16.01983 -15.84535 -15.75782 -15.40339 -15.34261 -14.90405 -14.38508 -14.25054 -14.06766 -13.75560 -13.50945 -13.45348 -13.18388 -12.60116 -12.58605 -12.22726 -12.16032 -12.03789 -11.91412 -11.39694 -11.19177 -10.97645 -10.71512 -10.67988 -10.42765 -10.29880 -8.76706 -4.97835 -0.10653 0.08588 0.71506 1.30708 1.52326 1.64095 1.65505 1.97981 1.99802 2.51741 3.00725 3.23827 3.33673 3.46190 3.48770 3.61333 3.64764 3.67330 3.81382 3.84257 3.97604 4.05174 4.17004 4.28327 4.35201 4.37344 4.42670 4.46750 4.68844 4.70263 4.71354 4.80871 4.85545 4.96092 5.01952 5.06907 5.20018 5.29986 5.46166 5.73992 5.97740 6.19504 6.76789 6.95109 7.57440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.058 4.058 3 Si 0.770 3.230 4 C -0.206 4.206 5 C 0.146 3.854 6 N -0.528 5.528 7 C 0.381 3.619 8 N -0.702 5.702 9 C 0.133 3.867 10 H 0.106 0.894 11 C -0.118 4.118 12 C -0.112 4.112 13 H 0.092 0.908 14 C 0.118 3.882 15 N -0.286 5.286 16 C -0.036 4.036 17 C -0.073 4.073 18 N -0.324 5.324 19 N -0.119 5.119 20 C -0.141 4.141 21 C -0.037 4.037 22 F -0.140 7.140 23 C -0.041 4.041 24 H 0.395 0.605 25 H 0.112 0.888 26 H -0.296 1.296 27 H -0.279 1.279 28 H 0.181 0.819 29 H 0.418 0.582 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.148 0.852 33 H 0.109 0.891 34 H 0.235 0.765 35 H 0.209 0.791 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.864 -3.661 -2.102 6.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.168 4.168 3 Si 0.675 3.325 4 C -0.211 4.211 5 C -0.011 4.011 6 N -0.245 5.245 7 C 0.143 3.857 8 N -0.334 5.334 9 C 0.028 3.972 10 H 0.124 0.876 11 C -0.156 4.156 12 C -0.132 4.132 13 H 0.110 0.890 14 C -0.001 4.001 15 N -0.081 5.081 16 C -0.187 4.187 17 C -0.231 4.231 18 N -0.189 5.189 19 N -0.098 5.098 20 C -0.180 4.180 21 C -0.063 4.063 22 F -0.119 7.119 23 C -0.067 4.067 24 H 0.246 0.754 25 H 0.130 0.870 26 H -0.224 1.224 27 H -0.205 1.205 28 H 0.197 0.803 29 H 0.256 0.744 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.165 0.835 33 H 0.127 0.873 34 H 0.251 0.749 35 H 0.226 0.774 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.872 -2.244 -1.071 5.469 hybrid contribution 0.086 -2.010 0.162 2.019 sum 4.957 -4.254 -0.909 6.595 Atomic orbital electron populations 1.86475 1.17231 1.82117 1.50537 1.24966 0.85215 1.10506 0.96140 0.93778 0.78141 0.75104 0.85433 1.20983 1.04611 0.94904 1.00639 1.22679 0.91325 0.99814 0.87311 1.67329 1.26944 1.07716 1.22513 1.18622 0.90238 0.89193 0.87658 1.44632 1.54391 1.14675 1.19679 1.22488 0.91860 0.95619 0.87251 0.87587 1.23318 1.01127 0.98853 0.92350 1.22530 0.98716 0.99719 0.92208 0.88962 1.22559 1.06615 0.87682 0.83248 1.47857 1.21643 1.22070 1.16494 1.24422 1.02786 1.03417 0.88116 1.24223 0.97107 0.97976 1.03791 1.75097 1.19549 1.23389 1.00862 1.78273 1.13702 0.99982 1.17880 1.23541 0.97087 1.01782 0.95590 1.18121 1.07883 0.80862 0.99431 1.91466 1.92352 1.33946 1.94105 1.21428 0.96035 0.94723 0.94555 0.75446 0.87026 1.22386 1.20535 0.80264 0.74380 0.88857 0.87062 0.83451 0.87302 0.74882 0.77410 0.89649 0.92791 0.82828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.57 12.78 -148.98 -1.90 -1.34 16 2 C -0.06 0.12 2.83 71.23 0.20 0.32 16 3 Si 0.77 -2.78 29.82 68.60 2.05 -0.73 16 4 C -0.21 0.08 5.40 -19.76 -0.11 -0.02 16 5 C 0.15 0.01 9.84 84.61 0.83 0.84 16 6 N -0.53 -1.86 9.15 -193.02 -1.77 -3.63 16 7 C 0.38 1.17 7.49 133.08 1.00 2.17 16 8 N -0.70 0.94 5.51 -321.78 -1.77 -0.84 16 9 C 0.13 -0.44 4.24 45.52 0.19 -0.25 16 10 H 0.11 -0.01 7.45 -2.39 -0.02 -0.03 16 11 C -0.12 1.15 7.39 31.12 0.23 1.38 16 12 C -0.11 0.76 3.76 -10.21 -0.04 0.72 16 13 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 14 C 0.12 -1.05 6.30 86.38 0.54 -0.51 16 15 N -0.29 0.13 3.44 -347.72 -1.20 -1.07 16 16 C -0.04 0.13 11.57 83.49 0.97 1.10 16 17 C -0.07 -0.17 12.05 83.73 1.01 0.84 16 18 N -0.32 -3.65 12.41 -58.26 -0.72 -4.37 16 19 N -0.12 -1.06 12.93 37.02 0.48 -0.58 16 20 C -0.14 0.27 7.45 31.18 0.23 0.51 16 21 C -0.04 -0.13 7.35 22.58 0.17 0.04 16 22 F -0.14 -0.61 16.65 44.97 0.75 0.13 16 23 C -0.04 -0.07 9.75 22.48 0.22 0.15 16 24 H 0.40 -3.41 8.70 -74.06 -0.64 -4.06 16 25 H 0.11 -0.16 7.96 -2.39 -0.02 -0.18 16 26 H -0.30 -1.20 7.11 99.48 0.71 -0.49 16 27 H -0.28 -0.16 7.11 99.48 0.71 0.55 16 28 H 0.18 -0.85 4.88 -2.91 -0.01 -0.86 16 29 H 0.42 -1.77 8.18 -92.72 -0.76 -2.52 16 30 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 31 H 0.11 -1.47 8.07 -2.38 -0.02 -1.49 16 32 H 0.15 -2.41 8.07 -2.39 -0.02 -2.43 16 33 H 0.11 -1.08 7.86 -2.39 -0.02 -1.10 16 34 H 0.23 -3.25 8.06 -2.91 -0.02 -3.27 16 35 H 0.21 -0.78 8.06 -2.91 -0.02 -0.81 16 36 H 0.08 -0.14 7.91 -2.38 -0.02 -0.16 16 37 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 Total: 0.00 -24.34 329.99 1.11 -23.23 By element: Atomic # 1 Polarization: -17.85 SS G_CDS: -0.24 Total: -18.09 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.45 Total: 7.28 kcal Atomic # 7 Polarization: -5.50 SS G_CDS: -4.98 Total: -10.48 kcal Atomic # 8 Polarization: 0.57 SS G_CDS: -1.90 Total: -1.34 kcal Atomic # 9 Polarization: -0.61 SS G_CDS: 0.75 Total: 0.13 kcal Atomic # 14 Polarization: -2.78 SS G_CDS: 2.05 Total: -0.73 kcal Total: -24.34 1.11 -23.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14927564_17656566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.535 kcal (2) G-P(sol) polarization free energy of solvation -24.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds