Wall clock time and date at job start Mon Mar 8 2021 08:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.47162 * 2 1 4 4 C 1.50693 * 109.47414 * 120.00394 * 2 1 3 5 5 C 1.38608 * 120.72049 * 64.99614 * 4 2 1 6 6 N 1.32273 * 119.19580 * 179.97438 * 5 4 2 7 7 C 1.32489 * 120.74243 * 0.02562 * 6 5 4 8 8 N 1.38415 * 119.21979 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00383 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47195 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47153 * 304.99547 * 10 9 8 12 12 C 1.53000 * 109.47060 * 64.99866 * 10 9 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 16 16 C 1.53002 * 109.47454 * 180.02562 * 14 13 12 17 17 O 1.42901 * 109.46914 * 65.00068 * 16 14 13 18 18 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 19 19 C 1.53002 * 109.46817 * 184.99778 * 10 9 8 20 20 N 1.32489 * 121.56761 * 0.26875 * 7 6 5 21 21 C 1.32278 * 120.73794 * 359.45151 * 20 7 6 22 22 H 0.96704 * 113.99685 * 299.99338 * 1 2 3 23 23 H 1.09005 * 109.46842 * 240.00306 * 2 1 3 24 24 H 1.48502 * 109.99920 * 178.68323 * 3 2 1 25 25 H 1.48494 * 110.00117 * 300.00620 * 3 2 1 26 26 H 1.07995 * 120.40059 * 0.02562 * 5 4 2 27 27 H 0.96999 * 119.99576 * 359.97438 * 8 7 6 28 28 H 1.09001 * 109.47117 * 59.99178 * 9 8 7 29 29 H 1.09004 * 109.46581 * 299.99830 * 9 8 7 30 30 H 1.09001 * 109.47194 * 299.99650 * 12 10 9 31 31 H 1.08992 * 109.47399 * 59.99823 * 12 10 9 32 32 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 34 34 H 1.08998 * 109.47254 * 185.00083 * 16 14 13 35 35 H 1.09000 * 109.46519 * 305.00454 * 16 14 13 36 36 H 0.96693 * 113.99989 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.47375 * 180.02562 * 18 14 13 38 38 H 1.09002 * 109.47497 * 59.99850 * 18 14 13 39 39 H 1.09002 * 109.47075 * 299.99262 * 19 10 9 40 40 H 1.08996 * 109.47407 * 60.00219 * 19 10 9 41 41 H 1.08001 * 120.40401 * 180.29826 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2303 5 6 1.6926 -2.0634 1.4138 6 7 2.1479 -2.6568 2.5048 7 6 2.8243 -1.9727 3.4158 8 7 3.2857 -2.6252 4.5459 9 6 4.0350 -1.8854 5.5643 10 6 4.4247 -2.8336 6.7001 11 1 3.5310 -3.3226 7.0878 12 6 5.3960 -3.8908 6.1712 13 6 5.7851 -4.8394 7.3069 14 6 6.4576 -4.0441 8.4277 15 1 7.3515 -3.5551 8.0404 16 6 6.8474 -4.9927 9.5632 17 8 7.8423 -5.9075 9.0993 18 6 5.4864 -2.9869 8.9566 19 6 5.0973 -2.0379 7.8205 20 7 3.0645 -0.6776 3.2735 21 6 2.6419 -0.0251 2.2033 22 1 -0.3933 0.4416 0.7652 23 1 1.7923 -0.5138 -0.8901 24 1 3.5346 1.7703 0.0321 25 1 1.5614 2.4679 -1.2084 26 1 1.1422 -2.6264 0.6746 27 1 3.1123 -3.5723 4.6638 28 1 3.4143 -1.0812 5.9595 29 1 4.9354 -1.4633 5.1178 30 1 4.9168 -4.4576 5.3730 31 1 6.2896 -3.4017 5.7836 32 1 6.4775 -5.5923 6.9304 33 1 4.8913 -5.3284 7.6942 34 1 7.2452 -4.4159 10.3981 35 1 5.9682 -5.5475 9.8909 36 1 8.1371 -6.5405 9.7681 37 1 5.9656 -2.4200 9.7548 38 1 4.5925 -3.4758 9.3439 39 1 5.9910 -1.5489 7.4329 40 1 4.4054 -1.2847 8.1973 41 1 2.8449 1.0296 2.0905 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14939084_12175864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:48 Heat of formation + Delta-G solvation = -42.161461 kcal Electronic energy + Delta-G solvation = -21657.685367 eV Core-core repulsion = 18345.501378 eV Total energy + Delta-G solvation = -3312.183989 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.03254 -40.32899 -38.29360 -37.70761 -36.44472 -34.65838 -33.57784 -31.90307 -31.71223 -28.29894 -26.36763 -25.86882 -24.47401 -23.78113 -22.92934 -21.69313 -20.87895 -19.34991 -18.64974 -18.22349 -18.04290 -16.75541 -16.47565 -16.32592 -16.09465 -15.79639 -15.66467 -15.50651 -15.22739 -14.86046 -14.70736 -14.50695 -14.12459 -14.02763 -13.54214 -13.20440 -13.15908 -12.91457 -12.57353 -12.20634 -12.14470 -12.01599 -11.81879 -11.73517 -11.49460 -11.34711 -11.20427 -11.09002 -10.84723 -10.56008 -9.97923 -9.05499 -5.09836 0.10939 0.20616 1.24147 1.58028 1.86277 1.93956 2.87895 3.14839 3.18567 3.43030 3.56841 3.62291 3.65510 3.68952 3.74716 3.82437 4.03310 4.11496 4.21365 4.22855 4.35510 4.39914 4.42871 4.49630 4.51730 4.56585 4.62359 4.70972 4.75946 4.79192 4.85833 4.98883 5.06964 5.12337 5.16405 5.20794 5.27798 5.38693 5.46763 5.81151 6.04763 6.44658 6.53126 6.65710 7.33994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.046 4.046 3 Si 0.680 3.320 4 C -0.297 4.297 5 C 0.224 3.776 6 N -0.570 5.570 7 C 0.567 3.433 8 N -0.694 5.694 9 C 0.140 3.860 10 C -0.101 4.101 11 H 0.078 0.922 12 C -0.116 4.116 13 C -0.110 4.110 14 C -0.088 4.088 15 H 0.078 0.922 16 C 0.078 3.922 17 O -0.574 6.574 18 C -0.112 4.112 19 C -0.108 4.108 20 N -0.562 5.562 21 C 0.200 3.800 22 H 0.379 0.621 23 H 0.115 0.885 24 H -0.255 1.255 25 H -0.251 1.251 26 H 0.170 0.830 27 H 0.414 0.586 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.380 0.620 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.480 1.426 4.155 4.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.158 4.158 3 Si 0.582 3.418 4 C -0.305 4.305 5 C 0.055 3.945 6 N -0.292 5.292 7 C 0.210 3.790 8 N -0.331 5.331 9 C 0.016 3.984 10 C -0.120 4.120 11 H 0.097 0.903 12 C -0.153 4.153 13 C -0.148 4.148 14 C -0.107 4.107 15 H 0.096 0.904 16 C 0.000 4.000 17 O -0.379 6.379 18 C -0.150 4.150 19 C -0.146 4.146 20 N -0.285 5.285 21 C 0.033 3.967 22 H 0.226 0.774 23 H 0.132 0.868 24 H -0.180 1.180 25 H -0.175 1.175 26 H 0.187 0.813 27 H 0.252 0.748 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.227 0.773 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.472 1.673 3.640 4.034 hybrid contribution -0.204 -0.890 -0.321 0.968 sum 0.269 0.783 3.319 3.421 Atomic orbital electron populations 1.86511 1.17172 1.81656 1.49249 1.24694 0.85075 1.09604 0.96422 0.95011 0.81108 0.77818 0.87907 1.21695 1.09279 0.97868 1.01662 1.22828 0.89144 0.90963 0.91558 1.67984 1.16683 1.40018 1.04520 1.19398 0.87084 0.85507 0.86974 1.44216 1.58554 1.12215 1.18084 1.21422 0.95823 0.94050 0.87094 1.21457 0.99233 0.96303 0.94968 0.90347 1.21622 0.99142 0.96727 0.97820 1.21517 1.00323 0.97778 0.95151 1.21174 0.98887 0.95329 0.95305 0.90390 1.22248 0.90575 0.91128 0.96024 1.86474 1.59585 1.49103 1.42763 1.21512 0.99089 0.96561 0.97847 1.21460 1.00809 0.97564 0.94788 1.67923 1.27038 1.08303 1.25214 1.22755 0.88159 0.99163 0.86656 0.77384 0.86754 1.18005 1.17545 0.81335 0.74771 0.91210 0.91279 0.91924 0.91596 0.91075 0.92119 0.93666 0.93681 0.77308 0.91438 0.91606 0.91309 0.91196 0.81735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.27 12.85 -35.23 -0.45 -0.19 16 2 C -0.05 0.04 2.83 36.00 0.10 0.14 16 3 Si 0.68 -1.16 29.89 -169.99 -5.08 -6.24 16 4 C -0.30 -0.07 5.36 -104.35 -0.56 -0.63 16 5 C 0.22 0.33 10.99 -17.23 -0.19 0.14 16 6 N -0.57 -1.84 10.46 -13.93 -0.15 -1.98 16 7 C 0.57 1.67 8.43 -322.81 -2.72 -1.05 16 8 N -0.69 -0.58 5.43 -62.31 -0.34 -0.92 16 9 C 0.14 -0.08 5.04 -4.04 -0.02 -0.10 16 10 C -0.10 0.18 2.22 -90.62 -0.20 -0.02 16 11 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 12 C -0.12 0.11 5.08 -26.73 -0.14 -0.03 16 13 C -0.11 0.04 5.10 -26.73 -0.14 -0.10 16 14 C -0.09 0.06 2.43 -90.62 -0.22 -0.16 16 15 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 16 C 0.08 -0.05 6.43 37.16 0.24 0.18 16 17 O -0.57 -0.39 13.19 -35.23 -0.46 -0.85 16 18 C -0.11 0.21 5.21 -26.71 -0.14 0.08 16 19 C -0.11 0.22 5.21 -26.70 -0.14 0.09 16 20 N -0.56 -1.47 9.59 -13.93 -0.13 -1.60 16 21 C 0.20 0.11 9.92 -17.22 -0.17 -0.06 16 22 H 0.38 -1.56 8.70 45.56 0.40 -1.17 16 23 H 0.12 -0.09 7.96 -51.93 -0.41 -0.50 16 24 H -0.26 -0.19 7.11 56.52 0.40 0.22 16 25 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 26 H 0.17 -0.06 8.06 -52.49 -0.42 -0.48 16 27 H 0.41 -0.02 7.77 -40.82 -0.32 -0.34 16 28 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.06 -0.05 7.18 -51.93 -0.37 -0.42 16 31 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.07 0.09 7.82 -51.93 -0.41 -0.32 16 33 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 34 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 35 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 36 H 0.38 -1.28 9.12 45.56 0.42 -0.86 16 37 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 38 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 39 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 40 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 41 H 0.17 -0.36 5.07 -52.49 -0.27 -0.63 16 LS Contribution 329.23 15.07 4.96 4.96 Total: 0.00 -7.14 329.23 -11.60 -18.74 By element: Atomic # 1 Polarization: -4.74 SS G_CDS: -5.66 Total: -10.40 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -4.29 Total: -1.51 kcal Atomic # 7 Polarization: -3.89 SS G_CDS: -0.62 Total: -4.51 kcal Atomic # 8 Polarization: -0.12 SS G_CDS: -0.92 Total: -1.04 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: -5.08 Total: -6.24 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -7.14 -11.60 -18.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14939084_12175864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.422 kcal (2) G-P(sol) polarization free energy of solvation -7.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds