Wall clock time and date at job start Mon Mar 8 2021 08:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.47162 * 2 1 4 4 C 1.50693 * 109.47414 * 120.00394 * 2 1 3 5 5 C 1.38608 * 120.72049 * 64.99614 * 4 2 1 6 6 N 1.32273 * 119.19580 * 179.97438 * 5 4 2 7 7 C 1.32489 * 120.74243 * 0.02562 * 6 5 4 8 8 N 1.38415 * 119.21979 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00383 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47195 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47153 * 304.99547 * 10 9 8 12 12 C 1.53000 * 109.47060 * 64.99866 * 10 9 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 16 16 C 1.53002 * 109.47454 * 180.02562 * 14 13 12 17 17 O 1.42901 * 109.46914 * 65.00068 * 16 14 13 18 18 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 19 19 C 1.53002 * 109.46817 * 184.99778 * 10 9 8 20 20 N 1.32489 * 121.56761 * 0.26875 * 7 6 5 21 21 C 1.32278 * 120.73794 * 359.45151 * 20 7 6 22 22 H 0.96704 * 113.99685 * 299.99338 * 1 2 3 23 23 H 1.09005 * 109.46842 * 240.00306 * 2 1 3 24 24 H 1.48502 * 109.99920 * 178.68323 * 3 2 1 25 25 H 1.48494 * 110.00117 * 300.00620 * 3 2 1 26 26 H 1.07995 * 120.40059 * 0.02562 * 5 4 2 27 27 H 0.96999 * 119.99576 * 359.97438 * 8 7 6 28 28 H 1.09001 * 109.47117 * 59.99178 * 9 8 7 29 29 H 1.09004 * 109.46581 * 299.99830 * 9 8 7 30 30 H 1.09001 * 109.47194 * 299.99650 * 12 10 9 31 31 H 1.08992 * 109.47399 * 59.99823 * 12 10 9 32 32 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 34 34 H 1.08998 * 109.47254 * 185.00083 * 16 14 13 35 35 H 1.09000 * 109.46519 * 305.00454 * 16 14 13 36 36 H 0.96693 * 113.99989 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.47375 * 180.02562 * 18 14 13 38 38 H 1.09002 * 109.47497 * 59.99850 * 18 14 13 39 39 H 1.09002 * 109.47075 * 299.99262 * 19 10 9 40 40 H 1.08996 * 109.47407 * 60.00219 * 19 10 9 41 41 H 1.08001 * 120.40401 * 180.29826 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2303 5 6 1.6926 -2.0634 1.4138 6 7 2.1479 -2.6568 2.5048 7 6 2.8243 -1.9727 3.4158 8 7 3.2857 -2.6252 4.5459 9 6 4.0350 -1.8854 5.5643 10 6 4.4247 -2.8336 6.7001 11 1 3.5310 -3.3226 7.0878 12 6 5.3960 -3.8908 6.1712 13 6 5.7851 -4.8394 7.3069 14 6 6.4576 -4.0441 8.4277 15 1 7.3515 -3.5551 8.0404 16 6 6.8474 -4.9927 9.5632 17 8 7.8423 -5.9075 9.0993 18 6 5.4864 -2.9869 8.9566 19 6 5.0973 -2.0379 7.8205 20 7 3.0645 -0.6776 3.2735 21 6 2.6419 -0.0251 2.2033 22 1 -0.3933 0.4416 0.7652 23 1 1.7923 -0.5138 -0.8901 24 1 3.5346 1.7703 0.0321 25 1 1.5614 2.4679 -1.2084 26 1 1.1422 -2.6264 0.6746 27 1 3.1123 -3.5723 4.6638 28 1 3.4143 -1.0812 5.9595 29 1 4.9354 -1.4633 5.1178 30 1 4.9168 -4.4576 5.3730 31 1 6.2896 -3.4017 5.7836 32 1 6.4775 -5.5923 6.9304 33 1 4.8913 -5.3284 7.6942 34 1 7.2452 -4.4159 10.3981 35 1 5.9682 -5.5475 9.8909 36 1 8.1371 -6.5405 9.7681 37 1 5.9656 -2.4200 9.7548 38 1 4.5925 -3.4758 9.3439 39 1 5.9910 -1.5489 7.4329 40 1 4.4054 -1.2847 8.1973 41 1 2.8449 1.0296 2.0905 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14939084_12175864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:48 Heat of formation + Delta-G solvation = -41.105347 kcal Electronic energy + Delta-G solvation = -21657.639570 eV Core-core repulsion = 18345.501378 eV Total energy + Delta-G solvation = -3312.138193 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.10546 -40.26424 -38.26996 -37.66959 -36.44077 -34.75635 -33.56492 -31.86892 -31.66797 -28.27288 -26.35471 -25.91856 -24.45678 -23.70981 -22.95228 -21.63120 -20.80870 -19.38793 -18.69765 -18.19120 -18.02049 -16.76099 -16.44949 -16.29963 -16.09198 -15.75491 -15.65431 -15.50561 -15.18884 -14.82166 -14.66460 -14.52460 -14.12281 -14.02896 -13.50017 -13.18237 -13.10583 -12.84306 -12.50675 -12.25922 -12.05907 -11.95331 -11.92642 -11.78517 -11.42607 -11.35523 -11.12881 -11.03883 -10.78481 -10.54385 -10.05656 -9.10749 -4.99241 0.04262 0.12577 1.32505 1.65050 1.83303 1.99339 2.78639 3.14270 3.30464 3.54739 3.63002 3.65452 3.70052 3.73385 3.76248 3.82284 4.10689 4.18139 4.23790 4.30536 4.44031 4.48903 4.51320 4.56152 4.57422 4.64513 4.70866 4.74261 4.77550 4.82362 4.94077 5.08503 5.14528 5.19238 5.22142 5.25459 5.32738 5.44250 5.54219 5.74737 6.01958 6.38225 6.79041 6.87350 7.25422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.047 4.047 3 Si 0.770 3.230 4 C -0.289 4.289 5 C 0.212 3.788 6 N -0.592 5.592 7 C 0.550 3.450 8 N -0.691 5.691 9 C 0.147 3.853 10 C -0.089 4.089 11 H 0.084 0.916 12 C -0.111 4.111 13 C -0.106 4.106 14 C -0.089 4.089 15 H 0.063 0.937 16 C 0.075 3.925 17 O -0.597 6.597 18 C -0.108 4.108 19 C -0.107 4.107 20 N -0.578 5.578 21 C 0.195 3.805 22 H 0.395 0.605 23 H 0.113 0.887 24 H -0.285 1.285 25 H -0.295 1.295 26 H 0.182 0.818 27 H 0.417 0.583 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.395 0.605 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 1.960 4.763 5.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.159 4.159 3 Si 0.675 3.325 4 C -0.297 4.297 5 C 0.044 3.956 6 N -0.315 5.315 7 C 0.193 3.807 8 N -0.328 5.328 9 C 0.023 3.977 10 C -0.108 4.108 11 H 0.102 0.898 12 C -0.149 4.149 13 C -0.144 4.144 14 C -0.108 4.108 15 H 0.081 0.919 16 C -0.002 4.002 17 O -0.405 6.405 18 C -0.145 4.145 19 C -0.145 4.145 20 N -0.301 5.301 21 C 0.028 3.972 22 H 0.245 0.755 23 H 0.130 0.870 24 H -0.212 1.212 25 H -0.223 1.223 26 H 0.198 0.802 27 H 0.255 0.745 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.244 0.756 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.100 2.187 4.281 4.808 hybrid contribution -0.026 -1.061 -0.568 1.204 sum -0.126 1.126 3.712 3.881 Atomic orbital electron populations 1.86480 1.17191 1.82098 1.50433 1.24810 0.85135 1.10185 0.95762 0.93958 0.77827 0.75132 0.85546 1.21771 1.08701 0.97426 1.01831 1.23145 0.89213 0.91768 0.91467 1.67995 1.17525 1.40692 1.05268 1.19663 0.87551 0.85925 0.87523 1.44302 1.58311 1.12383 1.17840 1.21389 0.95172 0.94174 0.86970 1.21358 0.99104 0.95759 0.94589 0.89779 1.21565 0.98922 0.96792 0.97608 1.21460 1.00028 0.97488 0.95418 1.21181 0.98603 0.95644 0.95335 0.91888 1.22332 0.90706 0.91130 0.96079 1.86435 1.60059 1.49853 1.44199 1.21483 0.98955 0.96177 0.97917 1.21460 1.00823 0.97654 0.94547 1.67967 1.27686 1.08300 1.26150 1.23195 0.87605 1.00211 0.86149 0.75539 0.86962 1.21193 1.22301 0.80152 0.74497 0.91265 0.92247 0.92171 0.92593 0.92953 0.91627 0.92813 0.92861 0.75577 0.90804 0.90975 0.91687 0.90262 0.79369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.96 12.85 -148.98 -1.91 -0.95 16 2 C -0.05 0.11 2.83 71.23 0.20 0.31 16 3 Si 0.77 -2.99 29.89 68.60 2.05 -0.94 16 4 C -0.29 -0.06 5.36 -19.69 -0.11 -0.17 16 5 C 0.21 0.67 10.99 84.71 0.93 1.60 16 6 N -0.59 -4.21 10.46 -197.99 -2.07 -6.28 16 7 C 0.55 3.58 8.43 261.49 2.20 5.78 16 8 N -0.69 -1.62 5.43 -351.05 -1.91 -3.52 16 9 C 0.15 -0.10 5.04 86.38 0.44 0.34 16 10 C -0.09 0.31 2.22 -10.79 -0.02 0.29 16 11 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 12 C -0.11 0.12 5.08 30.59 0.16 0.28 16 13 C -0.11 0.00 5.10 30.60 0.16 0.16 16 14 C -0.09 0.08 2.43 -10.79 -0.03 0.05 16 15 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 16 C 0.07 -0.10 6.43 71.98 0.46 0.36 16 17 O -0.60 -1.10 13.19 -148.98 -1.97 -3.06 16 18 C -0.11 0.47 5.21 30.61 0.16 0.63 16 19 C -0.11 0.48 5.21 30.61 0.16 0.64 16 20 N -0.58 -3.15 9.59 -197.98 -1.90 -5.05 16 21 C 0.20 0.15 9.92 84.71 0.84 0.99 16 22 H 0.39 -3.68 8.70 -74.05 -0.64 -4.32 16 23 H 0.11 -0.21 7.96 -2.38 -0.02 -0.23 16 24 H -0.28 -0.34 7.11 99.48 0.71 0.37 16 25 H -0.30 -1.10 7.11 99.48 0.71 -0.39 16 26 H 0.18 -0.08 8.06 -2.91 -0.02 -0.11 16 27 H 0.42 0.27 7.77 -92.71 -0.72 -0.45 16 28 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.06 -0.03 7.18 -2.39 -0.02 -0.05 16 31 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.05 0.20 7.82 -2.39 -0.02 0.18 16 33 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.39 -2.53 9.12 -74.06 -0.68 -3.21 16 37 H 0.07 -0.39 8.14 -2.39 -0.02 -0.40 16 38 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 39 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.08 -0.47 8.14 -2.39 -0.02 -0.48 16 41 H 0.19 -1.01 5.07 -2.91 -0.01 -1.02 16 Total: 0.00 -16.84 329.23 -3.11 -19.94 By element: Atomic # 1 Polarization: -10.44 SS G_CDS: -0.95 Total: -11.39 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 5.55 Total: 11.25 kcal Atomic # 7 Polarization: -8.97 SS G_CDS: -5.88 Total: -14.85 kcal Atomic # 8 Polarization: -0.14 SS G_CDS: -3.88 Total: -4.02 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: 2.05 Total: -0.94 kcal Total: -16.84 -3.11 -19.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14939084_12175864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.160 kcal (2) G-P(sol) polarization free energy of solvation -16.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds